CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 452

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13452V452VV5776VsyngtGgtT12186820.55993417590-17592
ORF1ab/nsp13452V452VV5776VsyngtGgtA12185320.43678217590-17592
ORF1ab/nsp13452V452VV5776VsyngtGgtC121840.0032840717590-17592
ORF1ab/nsp13452V452LV5776LnonsynGtgTtg4894830.9877317590-17592
ORF1ab/nsp13452V452LV5776LnonsynGtgCtg48950.010224917590-17592
ORF1ab/nsp13452V452LV5776LnonsynGtGTtA48910.0020449917590-17592
ORF1ab/nsp13452V452delV5776deldelGTG---1717117590-17592
ORF1ab/nsp13452V452AV5776AnonsyngTggCg17130.76470617590-17592
ORF1ab/nsp13452V452AV5776AnonsyngTGgCC1720.11764717590-17592
ORF1ab/nsp13452V452AV5776AnonsyngTGgCA1720.11764717590-17592
ORF1ab/nsp13452V452MV5776MnonsynGtgAtg1212117590-17592
ORF1ab/nsp13452V452GV5776GnonsyngTGgGC620.33333317590-17592
ORF1ab/nsp13452V452GV5776GnonsyngTGgGA620.33333317590-17592
ORF1ab/nsp13452V452GV5776GnonsyngTGgGT610.16666717590-17592
ORF1ab/nsp13452V452GV5776GnonsyngTggGg610.16666717590-17592
ORF1ab/nsp13452V452del1V5776del1delGtg-tg540.817590-17592
ORF1ab/nsp13452V452del1V5776del1delGtGAt-510.217590-17592
ORF1ab/nsp13452V452RV5776RnonsynGTGCGT420.517590-17592
ORF1ab/nsp13452V452TV5776TnonsynGTGACA420.517590-17592
ORF1ab/nsp13452V452TV5776TnonsynGTGACC420.517590-17592
ORF1ab/nsp13452V452RV5776RnonsynGTGAGA420.517590-17592
ORF1ab/nsp13452V452KV5776KnonsynGTGAAA420.517590-17592
ORF1ab/nsp13452V452KV5776KnonsynGTgAAg420.517590-17592
ORF1ab/nsp13452V452EV5776EnonsyngTggAg33117590-17592
ORF1ab/nsp13452V452IV5776InonsynGtGAtA22117590-17592
ORF1ab/nsp13452V452SV5776SnonsynGTGAGC22117590-17592
ORF1ab/nsp13452V452del2V5776del2delgTGg--11117590-17592

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13452V452VgtGgtT6821218All0.00013
ORF1ab/nsp13452V452VgtGgtA5321218All0.000102
ORF1ab/nsp13452V452VgtGgtC41218All0.000001
ORF1ab/nsp13452V452LGtgTtg483489All0.000092
ORF1ab/nsp13452V452LGtgCtg5489All0.000001
ORF1ab/nsp13452V452LGtGTtA1489All0
ORF1ab/nsp13452V452VgtGgtA392463AY.40.00061
ORF1ab/nsp13452V452VgtGgtT71463AY.40.000111
ORF1ab/nsp13452V452LGtgTtg260260B.10.002381
ORF1ab/nsp13452V452VgtGgtT105124B.1.1.70.000094
ORF1ab/nsp13452V452VgtGgtA19124B.1.1.70.000017
ORF1ab/nsp13452V452VgtGgtA7286AY.1030.000447
ORF1ab/nsp13452V452VgtGgtT1486AY.1030.000087
ORF1ab/nsp13452V452VgtGgtT5353AY.430.000235
ORF1ab/nsp13452V452VgtGgtT5050B.1.438.10.005363
ORF1ab/nsp13452V452VgtGgtT5050P.10.000788
ORF1ab/nsp13452V452VgtGgtT3537B.1.617.20.000132
ORF1ab/nsp13452V452VgtGgtA237B.1.617.20.000008
ORF1ab/nsp13452V452LGtgTtg3132B.1.1.70.000028
ORF1ab/nsp13452V452LGtGTtA132B.1.1.70.000001
ORF1ab/nsp13452V452VgtGgtT3131C.90.939394
ORF1ab/nsp13452V452LGtgTtg2323B.1.1.3780.167883
ORF1ab/nsp13452V452VgtGgtT1818B.1.619.10.011546
ORF1ab/nsp13452V452delGTG---1717All0.000003
ORF1ab/nsp13452V452AgTggCg1317All0.000002
ORF1ab/nsp13452V452AgTGgCA217All0
ORF1ab/nsp13452V452AgTGgCC217All0
ORF1ab/nsp13452V452LGtgTtg1717AY.430.000075
ORF1ab/nsp13452V452VgtGgtT1617B.10.000147
ORF1ab/nsp13452V452VgtGgtA117B.10.000009
ORF1ab/nsp13452V452VgtGgtA1417B.1.4270.000707
ORF1ab/nsp13452V452VgtGgtT317B.1.4270.000151
ORF1ab/nsp13452V452VgtGgtT1516B.1.10.000272
ORF1ab/nsp13452V452VgtGgtA116B.1.10.000018
ORF1ab/nsp13452V452LGtgTtg1313B.1.617.20.000049
ORF1ab/nsp13452V452MGtgAtg1212All0.000002
ORF1ab/nsp13452V452LGtgTtg1212AY.40.000019
ORF1ab/nsp13452V452VgtGgtT1212B.1.1.5190.000477
ORF1ab/nsp13452V452LGtgTtg1111AY.250.000066
ORF1ab/nsp13452V452VgtGgtT610AY.440.000037
ORF1ab/nsp13452V452VgtGgtA410AY.440.000024
ORF1ab/nsp13452V452VgtGgtT1010AY.480.004651
ORF1ab/nsp13452V452VgtGgtT99AY.1140.00208
ORF1ab/nsp13452V452VgtGgtT99B.1.1.3120.017208
ORF1ab/nsp13452V452VgtGgtT99B.1.20.000079
ORF1ab/nsp13452V452LGtgTtg78B.1.20.000062
ORF1ab/nsp13452V452LGtgCtg18B.1.20.000009
ORF1ab/nsp13452V452LGtgTtg88B.1.2210.000568
ORF1ab/nsp13452V452LGtgTtg88B.1.360.001167
ORF1ab/nsp13452V452GgTGgGC26All0
ORF1ab/nsp13452V452GgTGgGA26All0
ORF1ab/nsp13452V452GgTggGg16All0
ORF1ab/nsp13452V452GgTGgGT16All0
ORF1ab/nsp13452V452VgtGgtT66AY.260.00017
ORF1ab/nsp13452V452delGTG---66B.1.1.70.000005
ORF1ab/nsp13452V452VgtGgtT66B.1.3110.001647
ORF1ab/nsp13452V452VgtGgtT66B.6.60.005333
ORF1ab/nsp13452V452del1Gtg-tg45All0.000001
ORF1ab/nsp13452V452del1GtGAt-15All0
ORF1ab/nsp13452V452VgtGgtT45AY.1130.00057
ORF1ab/nsp13452V452VgtGgtA15AY.1130.000142
ORF1ab/nsp13452V452VgtGgtT45AY.1200.000149
ORF1ab/nsp13452V452VgtGgtA15AY.1200.000037
ORF1ab/nsp13452V452VgtGgtT55AY.230.000349
ORF1ab/nsp13452V452VgtGgtT55AY.30.00005
ORF1ab/nsp13452V452VgtGgtA55AY.300.001979
ORF1ab/nsp13452V452VgtGgtT45AY.390.000099
ORF1ab/nsp13452V452VgtGgtA15AY.390.000025
ORF1ab/nsp13452V452LGtgTtg55AY.440.00003
ORF1ab/nsp13452V452VgtGgtT55AY.470.000156
ORF1ab/nsp13452V452LGtgTtg55AY.740.000578
ORF1ab/nsp13452V452VgtGgtA55B.1.1600.000156
ORF1ab/nsp13452V452VgtGgtT55B.1.177.70.000824
ORF1ab/nsp13452V452VgtGgtA35B.1.2210.000213
ORF1ab/nsp13452V452VgtGgtT25B.1.2210.000142
ORF1ab/nsp13452V452VgtGgtT45B.1.6210.000354
ORF1ab/nsp13452V452VgtGgtA15B.1.6210.000089
ORF1ab/nsp13452V452RGTGAGA240.111111
ORF1ab/nsp13452V452RGTGCGT240.111111
ORF1ab/nsp13452V452KGTGAAA240.111111
ORF1ab/nsp13452V452GgTGgGC240.111111
ORF1ab/nsp13452V452GgTGgGA240.111111
ORF1ab/nsp13452V452KGTgAAg240.111111
ORF1ab/nsp13452V452AgTGgCC240.111111
ORF1ab/nsp13452V452AgTGgCA240.111111
ORF1ab/nsp13452V452TGTGACC240.111111
ORF1ab/nsp13452V452TGTGACA240.111111
ORF1ab/nsp13452V452KGTGAAA24All0
ORF1ab/nsp13452V452RGTGCGT24All0
ORF1ab/nsp13452V452TGTGACC24All0
ORF1ab/nsp13452V452KGTgAAg24All0
ORF1ab/nsp13452V452TGTGACA24All0
ORF1ab/nsp13452V452RGTGAGA24All0
ORF1ab/nsp13452V452VgtGgtT44AY.1000.000184
ORF1ab/nsp13452V452LGtgTtg44AY.1030.000025
ORF1ab/nsp13452V452VgtGgtT34AY.250.000018
ORF1ab/nsp13452V452VgtGgtC14AY.250.000006
ORF1ab/nsp13452V452VgtGgtT44AY.940.001771
ORF1ab/nsp13452V452VgtGgtT44B.1.1.250.002274
ORF1ab/nsp13452V452VgtGgtT44B.1.1770.000053
ORF1ab/nsp13452V452LGtgTtg44B.1.177.40.000844
ORF1ab/nsp13452V452AgTggCg44B.1.3510.000119
ORF1ab/nsp13452V452VgtGgtT44B.1.4290.000094
ORF1ab/nsp13452V452LGtgTtg44B.1.5260.000094
ORF1ab/nsp13452V452VgtGgtT44B.1.6020.026144
ORF1ab/nsp13452V452VgtGgtT44B.450.015326
ORF1ab/nsp13452V452LGtgTtg44P.10.000063
ORF1ab/nsp13452V452VgtGgtT44P.1.140.000191
ORF1ab/nsp13452V452EgTggAg33All0.000001
ORF1ab/nsp13452V452LGtgTtg33AY.30.00003
ORF1ab/nsp13452V452VgtGgtT33AY.46.60.000217
ORF1ab/nsp13452V452VgtGgtT33B.1.1.2770.002276
ORF1ab/nsp13452V452VgtGgtT33B.1.1.4340.001046
ORF1ab/nsp13452V452AgTggCg33B.1.1.70.000003
ORF1ab/nsp13452V452LGtgTtg33B.1.1470.002268
ORF1ab/nsp13452V452LGtgTtg33B.1.1770.00004
ORF1ab/nsp13452V452VgtGgtT33B.1.351.20.000908
ORF1ab/nsp13452V452LGtgTtg23B.1.4270.000101
ORF1ab/nsp13452V452LGtgCtg13B.1.4270.00005
ORF1ab/nsp13452V452LGtgTtg33B.360.230769
ORF1ab/nsp13452V452VgtGgtA23P.1.70.000639
ORF1ab/nsp13452V452VgtGgtT13P.1.70.000319
ORF1ab/nsp13452V452SGTGAGC220.111111
ORF1ab/nsp13452V452IGtGAtA220.111111
ORF1ab/nsp13452V452MGtgAtg220.111111
ORF1ab/nsp13452V452LGtgTtg22A.2.20.003378
ORF1ab/nsp13452V452LGtgCtg22AD.20.000438
ORF1ab/nsp13452V452SGTGAGC22All0
ORF1ab/nsp13452V452IGtGAtA22All0
ORF1ab/nsp13452V452VgtGgtT22AY.1010.000981
ORF1ab/nsp13452V452VgtGgtT22AY.1110.000366
ORF1ab/nsp13452V452VgtGgtT22AY.1180.000125
ORF1ab/nsp13452V452LGtgTtg22AY.290.000032
ORF1ab/nsp13452V452VgtGgtT22AY.290.000032
ORF1ab/nsp13452V452VgtGgtT22AY.330.000134
ORF1ab/nsp13452V452VgtGgtA22AY.4.20.000043
ORF1ab/nsp13452V452VgtGgtT22AY.4.30.001684
ORF1ab/nsp13452V452VgtGgtT22AY.4.40.000818
ORF1ab/nsp13452V452LGtgTtg22AY.46.50.000397
ORF1ab/nsp13452V452LGtgTtg22AY.50.000041
ORF1ab/nsp13452V452AgTggCg22B.10.000018
ORF1ab/nsp13452V452LGtgTtg22B.1.10.000036
ORF1ab/nsp13452V452VgtGgtT22B.1.1.10.000653
ORF1ab/nsp13452V452LGtgTtg22B.1.110.30.001437
ORF1ab/nsp13452V452VgtGgtT22B.1.1310.017544
ORF1ab/nsp13452V452VgtGgtA22B.1.177.150.001262
ORF1ab/nsp13452V452VgtGgtT22B.1.3560.003454
ORF1ab/nsp13452V452VgtGgtA12B.1.360.000146
ORF1ab/nsp13452V452VgtGgtT12B.1.360.000146
ORF1ab/nsp13452V452LGtgTtg22B.1.5250.000226
ORF1ab/nsp13452V452LGtgTtg22B.1.5270.007407
ORF1ab/nsp13452V452VgtGgtT22B.1.617.10.000258
ORF1ab/nsp13452V452delGTG---22B.1.617.20.000008
ORF1ab/nsp13452V452MGtgAtg22C.350.001548
ORF1ab/nsp13452V452LGtgCtg12D.20.000075
ORF1ab/nsp13452V452LGtgTtg12D.20.000075
ORF1ab/nsp13452V452VgtGgtT22Q.10.000253
ORF1ab/nsp13452V452VgtGgtT22Q.40.00091
ORF1ab/nsp13452V452del1GtGAt-11A0.000387
ORF1ab/nsp13452V452EgTggAg11A.2.40.003367
ORF1ab/nsp13452V452LGtgTtg11A.2.5.20.001572
ORF1ab/nsp13452V452del2gTGg--11All0
ORF1ab/nsp13452V452VgtGgtT11AY.1020.000027
ORF1ab/nsp13452V452LGtgTtg11AY.1020.000027
ORF1ab/nsp13452V452VgtGgtT11AY.1060.000335
ORF1ab/nsp13452V452LGtgTtg11AY.110.001339
ORF1ab/nsp13452V452LGtgTtg11AY.1170.000085
ORF1ab/nsp13452V452LGtgTtg11AY.1180.000063
ORF1ab/nsp13452V452MGtgAtg11AY.1180.000063
ORF1ab/nsp13452V452VgtGgtT11AY.1190.000035
ORF1ab/nsp13452V452VgtGgtT11AY.23.10.000417
ORF1ab/nsp13452V452VgtGgtC11AY.340.000097
ORF1ab/nsp13452V452VgtGgtT11AY.34.10.00051
ORF1ab/nsp13452V452delGTG---11AY.370.000316
ORF1ab/nsp13452V452LGtgTtg11AY.39.10.00004
ORF1ab/nsp13452V452VgtGgtT11AY.39.10.00004
ORF1ab/nsp13452V452del1Gtg-tg11AY.4.50.000107
ORF1ab/nsp13452V452delGTG---11AY.4.50.000107
ORF1ab/nsp13452V452VgtGgtT11AY.420.00004
ORF1ab/nsp13452V452LGtgTtg11AY.420.00004
ORF1ab/nsp13452V452GgTGgGT11AY.440.000006
ORF1ab/nsp13452V452MGtgAtg11AY.440.000006
ORF1ab/nsp13452V452LGtgTtg11AY.460.000104
ORF1ab/nsp13452V452VgtGgtT11AY.46.40.000165
ORF1ab/nsp13452V452LGtgTtg11AY.46.60.000072
ORF1ab/nsp13452V452LGtgTtg11AY.470.000031
ORF1ab/nsp13452V452VgtGgtA11AY.490.003195
ORF1ab/nsp13452V452VgtGgtT11AY.50.000021
ORF1ab/nsp13452V452MGtgAtg11AY.60.000041
ORF1ab/nsp13452V452LGtgTtg11AY.60.000041
ORF1ab/nsp13452V452VgtGgtT11AY.650.000533
ORF1ab/nsp13452V452delGTG---11AY.670.000464
ORF1ab/nsp13452V452LGtgTtg11AY.7.10.000113
ORF1ab/nsp13452V452VgtGgtT11AY.75.10.00018
ORF1ab/nsp13452V452VgtGgtT11AY.850.000427
ORF1ab/nsp13452V452VgtGgtC11AY.950.000761
ORF1ab/nsp13452V452VgtGgtT11AY.970.001701
ORF1ab/nsp13452V452LGtgTtg11AY.980.000079
ORF1ab/nsp13452V452LGtgTtg11B0.000128
ORF1ab/nsp13452V452VgtGgtA11B0.000128
ORF1ab/nsp13452V452del1Gtg-tg11B.1.10.000018
ORF1ab/nsp13452V452MGtgAtg11B.1.10.000018
ORF1ab/nsp13452V452VgtGgtT11B.1.1.2160.00089
ORF1ab/nsp13452V452AgTggCg11B.1.1.2410.00207
ORF1ab/nsp13452V452VgtGgtT11B.1.1.2690.001353
ORF1ab/nsp13452V452LGtgTtg11B.1.1.2840.000107
ORF1ab/nsp13452V452VgtGgtT11B.1.1.2890.002083
ORF1ab/nsp13452V452LGtgTtg11B.1.1.3070.002532
ORF1ab/nsp13452V452LGtgTtg11B.1.1.3110.000358
ORF1ab/nsp13452V452VgtGgtT11B.1.1.330.000421
ORF1ab/nsp13452V452EgTggAg11B.1.1.390.00051
ORF1ab/nsp13452V452AgTggCg11B.1.1.4020.011111
ORF1ab/nsp13452V452VgtGgtT11B.1.1.500.000679
ORF1ab/nsp13452V452VgtGgtT11B.1.1.5230.001563
ORF1ab/nsp13452V452GgTggGg11B.1.1.70.000001
ORF1ab/nsp13452V452del1Gtg-tg11B.1.1.70.000001
ORF1ab/nsp13452V452del2gTGg--11B.1.1.70.000001
ORF1ab/nsp13452V452LGtgTtg11B.1.1.700.000341
ORF1ab/nsp13452V452LGtgTtg11B.1.1.740.00431
ORF1ab/nsp13452V452LGtgTtg11B.1.1340.005464
ORF1ab/nsp13452V452VgtGgtT11B.1.1400.018868
ORF1ab/nsp13452V452MGtgAtg11B.1.1770.000013
ORF1ab/nsp13452V452VgtGgtT11B.1.177.200.001517
ORF1ab/nsp13452V452VgtGgtT11B.1.177.330.001645
ORF1ab/nsp13452V452LGtgTtg11B.1.177.720.00339
ORF1ab/nsp13452V452delGTG---11B.1.1790.003759
ORF1ab/nsp13452V452AgTggCg11B.1.20.000009
ORF1ab/nsp13452V452AgTggCg11B.1.2060.000816
ORF1ab/nsp13452V452LGtgTtg11B.1.2430.00007
ORF1ab/nsp13452V452VgtGgtT11B.1.2430.00007
ORF1ab/nsp13452V452VgtGgtT11B.1.2580.000067
ORF1ab/nsp13452V452delGTG---11B.1.2580.000067
ORF1ab/nsp13452V452LGtgTtg11B.1.2580.000067
ORF1ab/nsp13452V452LGtgTtg11B.1.258.170.000104
ORF1ab/nsp13452V452MGtgAtg11B.1.3110.000275
ORF1ab/nsp13452V452LGtgTtg11B.1.3360.002439
ORF1ab/nsp13452V452VgtGgtT11B.1.3510.00003
ORF1ab/nsp13452V452del1Gtg-tg11B.1.360.000146
ORF1ab/nsp13452V452VgtGgtA11B.1.36.10.00114
ORF1ab/nsp13452V452VgtGgtT11B.1.36.80.001
ORF1ab/nsp13452V452LGtgTtg11B.1.3660.004878
ORF1ab/nsp13452V452LGtgTtg11B.1.3690.000285
ORF1ab/nsp13452V452VgtGgtT11B.1.400.10.015152
ORF1ab/nsp13452V452MGtgAtg11B.1.4130.004255
ORF1ab/nsp13452V452delGTG---11B.1.4150.014286
ORF1ab/nsp13452V452LGtgTtg11B.1.4530.003236
ORF1ab/nsp13452V452LGtgTtg11B.1.4560.003268
ORF1ab/nsp13452V452VgtGgtT11B.1.5250.000113
ORF1ab/nsp13452V452VgtGgtT11B.1.5400.009709
ORF1ab/nsp13452V452LGtgTtg11B.1.5640.000426
ORF1ab/nsp13452V452VgtGgtC11B.1.5760.000907
ORF1ab/nsp13452V452MGtgAtg11B.1.5820.000491
ORF1ab/nsp13452V452LGtgTtg11B.1.5880.00091
ORF1ab/nsp13452V452LGtgTtg11B.1.6000.005848
ORF1ab/nsp13452V452EgTggAg11B.1.6280.000352
ORF1ab/nsp13452V452delGTG---11B.1.6300.005236
ORF1ab/nsp13452V452LGtgTtg11B.400.000364
ORF1ab/nsp13452V452LGtgTtg11B.550.00295
ORF1ab/nsp13452V452VgtGgtT11B.60.00091
ORF1ab/nsp13452V452delGTG---11C.170.055556
ORF1ab/nsp13452V452VgtGgtT11C.36.30.000567
ORF1ab/nsp13452V452VgtGgtT11C.370.000116
ORF1ab/nsp13452V452VgtGgtT11D.20.000075
ORF1ab/nsp13452V452LGtgTtg11P.1.140.000048
ORF1ab/nsp13452V452VgtGgtT11P.1.150.000232
ORF1ab/nsp13452V452LGtgTtg11P.1.160.000374
ORF1ab/nsp13452V452VgtGgtT11Q.80.000165
ORF1ab/nsp13452V452delGTG---11U.30.003861