CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 439 | G439R | G5763R | nonsyn | Gga | Aga | 12173 | 12168 | 0.999589 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439R | G5763R | nonsyn | Gga | Cga | 12173 | 5 | 0.000410745 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439G | G5763G | syn | ggA | ggG | 561 | 430 | 0.766488 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439G | G5763G | syn | ggA | ggC | 561 | 120 | 0.213904 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439G | G5763G | syn | ggA | ggT | 561 | 11 | 0.0196078 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439V | G5763V | nonsyn | gGa | gTa | 71 | 70 | 0.985915 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439V | G5763V | nonsyn | gGA | gTG | 71 | 1 | 0.0140845 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439E | G5763E | nonsyn | gGa | gAa | 66 | 66 | 1 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439del | G5763del | del | GGA | --- | 26 | 26 | 1 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439X | G5763X | nonsyn | Gga | Tga | 13 | 13 | 1 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439del1 | G5763del1 | del | Gga | -ga | 6 | 5 | 0.833333 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439del1 | G5763del1 | del | ggA | gg- | 6 | 1 | 0.166667 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439S | G5763S | nonsyn | GGa | TCa | 4 | 2 | 0.5 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439S | G5763S | nonsyn | GGA | TCG | 4 | 2 | 0.5 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439T | G5763T | nonsyn | GGA | ACG | 4 | 2 | 0.5 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439T | G5763T | nonsyn | GGa | ACa | 4 | 2 | 0.5 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439L | G5763L | nonsyn | GGa | TTa | 1 | 1 | 1 | 17551-17553 |
ORF1ab/nsp13 | 439 | G439K | G5763K | nonsyn | GGa | AAa | 1 | 1 | 1 | 17551-17553 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 12168 | 12173 | All | 0.002327 |
ORF1ab/nsp13 | 439 | G439R | Gga | Cga | 5 | 12173 | All | 0.000001 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 11087 | 11087 | R.1 | 0.99793 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 430 | 561 | All | 0.000082 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 120 | 561 | All | 0.000023 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 11 | 561 | All | 0.000002 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 275 | 275 | B.1.1 | 0.004989 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 258 | 258 | B.1.258 | 0.017169 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 185 | 194 | B.1.1.7 | 0.000166 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 6 | 194 | B.1.1.7 | 0.000005 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 3 | 194 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 101 | 101 | B.1.1.220 | 0.187732 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 81 | 81 | B.1 | 0.000742 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 52 | 78 | AY.44 | 0.000317 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 25 | 78 | AY.44 | 0.000152 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 1 | 78 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 70 | 71 | All | 0.000013 |
ORF1ab/nsp13 | 439 | G439V | gGA | gTG | 1 | 71 | All | 0 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 66 | 66 | All | 0.000013 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 54 | 54 | AY.102 | 0.001432 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 53 | 54 | AY.103 | 0.000329 |
ORF1ab/nsp13 | 439 | G439R | Gga | Cga | 1 | 54 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 51 | 52 | B.1.1.7 | 0.000046 |
ORF1ab/nsp13 | 439 | G439R | Gga | Cga | 1 | 52 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 33 | 42 | AY.98.1 | 0.001598 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 9 | 42 | AY.98.1 | 0.000436 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 34 | 34 | B.1.1.525 | 0.185792 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 31 | 31 | A.2.5.2 | 0.048742 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 27 | 28 | B.1.160 | 0.000842 |
ORF1ab/nsp13 | 439 | G439R | Gga | Cga | 1 | 28 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 26 | 26 | All | 0.000005 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 12 | 22 | B.1.617.2 | 0.000045 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 8 | 22 | B.1.617.2 | 0.00003 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 2 | 22 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 18 | 19 | B.1.1 | 0.000327 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 19 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 17 | 17 | B.1.1.317 | 0.006999 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 14 | 15 | AY.3 | 0.000139 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 15 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 13 | 13 | All | 0.000002 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 13 | 13 | B.1.416 | 0.016497 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 12 | 12 | B.1.1.10 | 0.013378 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 6 | 9 | AY.25 | 0.000036 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 3 | 9 | AY.25 | 0.000018 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 4 | 8 | AY.4 | 0.000006 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 2 | 8 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 2 | 8 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 7 | 7 | B.1.264.1 | 0.333333 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 6 | 7 | B.1.617.2 | 0.000023 |
ORF1ab/nsp13 | 439 | G439V | gGA | gTG | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 7 | 7 | B.1.9.5 | 0.039773 |
ORF1ab/nsp13 | 439 | G439del1 | Gga | -ga | 5 | 6 | All | 0.000001 |
ORF1ab/nsp13 | 439 | G439del1 | ggA | gg- | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp13 | 439 | G439T | GGa | ACa | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 439 | G439T | GGA | ACG | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 439 | G439S | GGa | TCa | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 439 | G439S | GGA | TCG | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 439 | G439S | GGA | TCG | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 439 | G439T | GGA | ACG | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 439 | G439T | GGa | ACa | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 439 | G439S | GGa | TCa | 2 | 4 | All | 0 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 4 | 4 | B.1.177.32 | 0.005398 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 3 | 4 | P.1 | 0.000047 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 1 | 4 | P.1 | 0.000016 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 3 | 3 | B.1.1.521 | 0.016043 |
ORF1ab/nsp13 | 439 | G439del1 | Gga | -ga | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 439 | G439del1 | ggA | gg- | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 2 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggT | 1 | 2 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp13 | 439 | G439del1 | Gga | -ga | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 439 | G439K | GGa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 439 | G439L | GGa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 439 | G439L | GGa | TTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | B.1.1.310 | 0.015152 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.1.1.383 | 0.0625 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.522 | 0.017241 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.277 | 0.02381 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 439 | G439del1 | Gga | -ga | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 439 | G439R | Gga | Cga | 1 | 1 | B.1.598 | 0.016949 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 439 | G439V | gGa | gTa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp13 | 439 | G439X | Gga | Tga | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 439 | G439R | Gga | Cga | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 439 | G439E | gGa | gAa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggG | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp13 | 439 | G439R | Gga | Aga | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 439 | G439G | ggA | ggC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 439 | G439K | GGa | AAa | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp13 | 439 | G439del | GGA | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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