CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 439

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13439G439RG5763RnonsynGgaAga12173121680.99958917551-17553
ORF1ab/nsp13439G439RG5763RnonsynGgaCga1217350.00041074517551-17553
ORF1ab/nsp13439G439GG5763GsynggAggG5614300.76648817551-17553
ORF1ab/nsp13439G439GG5763GsynggAggC5611200.21390417551-17553
ORF1ab/nsp13439G439GG5763GsynggAggT561110.019607817551-17553
ORF1ab/nsp13439G439VG5763VnonsyngGagTa71700.98591517551-17553
ORF1ab/nsp13439G439VG5763VnonsyngGAgTG7110.014084517551-17553
ORF1ab/nsp13439G439EG5763EnonsyngGagAa6666117551-17553
ORF1ab/nsp13439G439delG5763deldelGGA---2626117551-17553
ORF1ab/nsp13439G439XG5763XnonsynGgaTga1313117551-17553
ORF1ab/nsp13439G439del1G5763del1delGga-ga650.83333317551-17553
ORF1ab/nsp13439G439del1G5763del1delggAgg-610.16666717551-17553
ORF1ab/nsp13439G439SG5763SnonsynGGaTCa420.517551-17553
ORF1ab/nsp13439G439SG5763SnonsynGGATCG420.517551-17553
ORF1ab/nsp13439G439TG5763TnonsynGGAACG420.517551-17553
ORF1ab/nsp13439G439TG5763TnonsynGGaACa420.517551-17553
ORF1ab/nsp13439G439LG5763LnonsynGGaTTa11117551-17553
ORF1ab/nsp13439G439KG5763KnonsynGGaAAa11117551-17553

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13439G439RGgaAga1216812173All0.002327
ORF1ab/nsp13439G439RGgaCga512173All0.000001
ORF1ab/nsp13439G439RGgaAga1108711087R.10.99793
ORF1ab/nsp13439G439GggAggG430561All0.000082
ORF1ab/nsp13439G439GggAggC120561All0.000023
ORF1ab/nsp13439G439GggAggT11561All0.000002
ORF1ab/nsp13439G439RGgaAga275275B.1.10.004989
ORF1ab/nsp13439G439RGgaAga258258B.1.2580.017169
ORF1ab/nsp13439G439GggAggG185194B.1.1.70.000166
ORF1ab/nsp13439G439GggAggC6194B.1.1.70.000005
ORF1ab/nsp13439G439GggAggT3194B.1.1.70.000003
ORF1ab/nsp13439G439RGgaAga101101B.1.1.2200.187732
ORF1ab/nsp13439G439RGgaAga8181B.10.000742
ORF1ab/nsp13439G439GggAggC5278AY.440.000317
ORF1ab/nsp13439G439GggAggG2578AY.440.000152
ORF1ab/nsp13439G439GggAggT178AY.440.000006
ORF1ab/nsp13439G439VgGagTa7071All0.000013
ORF1ab/nsp13439G439VgGAgTG171All0
ORF1ab/nsp13439G439EgGagAa6666All0.000013
ORF1ab/nsp13439G439GggAggG5454AY.1020.001432
ORF1ab/nsp13439G439RGgaAga5354AY.1030.000329
ORF1ab/nsp13439G439RGgaCga154AY.1030.000006
ORF1ab/nsp13439G439RGgaAga5152B.1.1.70.000046
ORF1ab/nsp13439G439RGgaCga152B.1.1.70.000001
ORF1ab/nsp13439G439GggAggC3342AY.98.10.001598
ORF1ab/nsp13439G439GggAggG942AY.98.10.000436
ORF1ab/nsp13439G439RGgaAga3434B.1.1.5250.185792
ORF1ab/nsp13439G439GggAggG3131A.2.5.20.048742
ORF1ab/nsp13439G439VgGagTa3030B.1.1.70.000027
ORF1ab/nsp13439G439RGgaAga2728B.1.1600.000842
ORF1ab/nsp13439G439RGgaCga128B.1.1600.000031
ORF1ab/nsp13439G439delGGA---2626All0.000005
ORF1ab/nsp13439G439GggAggG1222B.1.617.20.000045
ORF1ab/nsp13439G439GggAggC822B.1.617.20.00003
ORF1ab/nsp13439G439GggAggT222B.1.617.20.000008
ORF1ab/nsp13439G439GggAggG1819B.1.10.000327
ORF1ab/nsp13439G439GggAggC119B.1.10.000018
ORF1ab/nsp13439G439RGgaAga1818B.1.617.20.000068
ORF1ab/nsp13439G439RGgaAga1717B.1.1.3170.006999
ORF1ab/nsp13439G439GggAggG1415AY.30.000139
ORF1ab/nsp13439G439GggAggC115AY.30.00001
ORF1ab/nsp13439G439XGgaTga1313All0.000002
ORF1ab/nsp13439G439RGgaAga1313B.1.4160.016497
ORF1ab/nsp13439G439RGgaAga1212B.1.1.100.013378
ORF1ab/nsp13439G439delGGA---1212B.1.1.70.000011
ORF1ab/nsp13439G439EgGagAa1212B.1.1.70.000011
ORF1ab/nsp13439G439RGgaAga1111AY.40.000017
ORF1ab/nsp13439G439RGgaAga1010B.1.20.000088
ORF1ab/nsp13439G439GggAggG69AY.250.000036
ORF1ab/nsp13439G439GggAggC39AY.250.000018
ORF1ab/nsp13439G439GggAggG99B.1.3510.000268
ORF1ab/nsp13439G439GggAggG48AY.40.000006
ORF1ab/nsp13439G439GggAggT28AY.40.000003
ORF1ab/nsp13439G439GggAggC28AY.40.000003
ORF1ab/nsp13439G439GggAggG77AY.1030.000043
ORF1ab/nsp13439G439RGgaAga77AY.30.00007
ORF1ab/nsp13439G439VgGagTa77B.1.264.10.333333
ORF1ab/nsp13439G439VgGagTa67B.1.617.20.000023
ORF1ab/nsp13439G439VgGAgTG17B.1.617.20.000004
ORF1ab/nsp13439G439RGgaAga77B.1.9.50.039773
ORF1ab/nsp13439G439del1Gga-ga56All0.000001
ORF1ab/nsp13439G439del1ggAgg-16All0
ORF1ab/nsp13439G439VgGagTa66AY.230.000418
ORF1ab/nsp13439G439EgGagAa66AY.40.000009
ORF1ab/nsp13439G439EgGagAa66AY.430.000027
ORF1ab/nsp13439G439RGgaAga66AY.440.000037
ORF1ab/nsp13439G439EgGagAa66AY.98.10.000291
ORF1ab/nsp13439G439GggAggG55AY.200.000194
ORF1ab/nsp13439G439EgGagAa55AY.250.00003
ORF1ab/nsp13439G439RGgaAga55AY.430.000022
ORF1ab/nsp13439G439GggAggG55B.10.000046
ORF1ab/nsp13439G439RGgaAga55B.1.1.2220.00102
ORF1ab/nsp13439G439TGGaACa240.111111
ORF1ab/nsp13439G439TGGAACG240.111111
ORF1ab/nsp13439G439SGGaTCa240.111111
ORF1ab/nsp13439G439SGGATCG240.111111
ORF1ab/nsp13439G439SGGATCG24All0
ORF1ab/nsp13439G439TGGAACG24All0
ORF1ab/nsp13439G439TGGaACa24All0
ORF1ab/nsp13439G439SGGaTCa24All0
ORF1ab/nsp13439G439RGgaAga44AY.250.000024
ORF1ab/nsp13439G439GggAggG44AY.540.000381
ORF1ab/nsp13439G439GggAggG44AY.590.002119
ORF1ab/nsp13439G439RGgaAga44B.1.1770.000053
ORF1ab/nsp13439G439RGgaAga44B.1.177.320.005398
ORF1ab/nsp13439G439GggAggG44B.1.20.000035
ORF1ab/nsp13439G439EgGagAa44B.1.617.20.000015
ORF1ab/nsp13439G439GggAggG34P.10.000047
ORF1ab/nsp13439G439GggAggT14P.10.000016
ORF1ab/nsp13439G439GggAggC33AY.230.000209
ORF1ab/nsp13439G439RGgaAga33AY.420.000121
ORF1ab/nsp13439G439GggAggC33AY.660.003209
ORF1ab/nsp13439G439VgGagTa33B.10.000027
ORF1ab/nsp13439G439RGgaAga33B.1.1.390.001529
ORF1ab/nsp13439G439RGgaAga33B.1.1.5210.016043
ORF1ab/nsp13439G439del1Gga-ga23B.1.20.000018
ORF1ab/nsp13439G439del1ggAgg-13B.1.20.000009
ORF1ab/nsp13439G439GggAggG33B.1.5170.001281
ORF1ab/nsp13439G439RGgaAga33B.1.6210.000266
ORF1ab/nsp13439G439delGGA---220.111111
ORF1ab/nsp13439G439EgGagAa22AY.1020.000053
ORF1ab/nsp13439G439RGgaAga22AY.1020.000053
ORF1ab/nsp13439G439EgGagAa22AY.1030.000012
ORF1ab/nsp13439G439EgGagAa22AY.390.000049
ORF1ab/nsp13439G439RGgaAga22AY.390.000049
ORF1ab/nsp13439G439delGGA---22AY.4.50.000215
ORF1ab/nsp13439G439GggAggT12AY.420.00004
ORF1ab/nsp13439G439GggAggG12AY.420.00004
ORF1ab/nsp13439G439GggAggG22AY.430.000009
ORF1ab/nsp13439G439RGgaAga22AY.610.00021
ORF1ab/nsp13439G439EgGagAa22AY.750.000112
ORF1ab/nsp13439G439EgGagAa22AY.90.000135
ORF1ab/nsp13439G439EgGagAa22AY.9.10.000167
ORF1ab/nsp13439G439VgGagTa22B.1.10.000036
ORF1ab/nsp13439G439RGgaAga22B.1.1.2140.000111
ORF1ab/nsp13439G439GggAggG12B.1.1.280.000311
ORF1ab/nsp13439G439GggAggT12B.1.1.280.000311
ORF1ab/nsp13439G439RGgaAga22B.1.1.2910.001485
ORF1ab/nsp13439G439GggAggC22B.1.1.3060.000877
ORF1ab/nsp13439G439RGgaAga22B.1.1.510.003436
ORF1ab/nsp13439G439del1Gga-ga22B.1.1.70.000002
ORF1ab/nsp13439G439RGgaAga22B.1.1.830.00542
ORF1ab/nsp13439G439GggAggG22B.1.36.290.001035
ORF1ab/nsp13439G439RGgaAga22B.1.4290.000047
ORF1ab/nsp13439G439GggAggG22B.1.5250.000226
ORF1ab/nsp13439G439RGgaAga22B.1.6310.006734
ORF1ab/nsp13439G439EgGagAa22B.1.6370.000146
ORF1ab/nsp13439G439XGgaTga22D.20.00015
ORF1ab/nsp13439G439RGgaAga22P.10.000032
ORF1ab/nsp13439G439RGgaAga11A0.000387
ORF1ab/nsp13439G439XGgaTga11A.10.000282
ORF1ab/nsp13439G439RGgaAga11A.23.10.000704
ORF1ab/nsp13439G439RGgaAga11A.280.002646
ORF1ab/nsp13439G439delGGA---11AD.20.000219
ORF1ab/nsp13439G439GggAggG11AD.20.000219
ORF1ab/nsp13439G439KGGaAAa11All0
ORF1ab/nsp13439G439LGGaTTa11All0
ORF1ab/nsp13439G439EgGagAa11AY.1000.000046
ORF1ab/nsp13439G439VgGagTa11AY.1030.000006
ORF1ab/nsp13439G439EgGagAa11AY.1100.000113
ORF1ab/nsp13439G439GggAggC11AY.1160.000287
ORF1ab/nsp13439G439VgGagTa11AY.1190.000035
ORF1ab/nsp13439G439GggAggG11AY.1190.000035
ORF1ab/nsp13439G439RGgaAga11AY.1200.000037
ORF1ab/nsp13439G439VgGagTa11AY.1200.000037
ORF1ab/nsp13439G439EgGagAa11AY.130.000161
ORF1ab/nsp13439G439RGgaAga11AY.160.00038
ORF1ab/nsp13439G439RGgaAga11AY.180.010101
ORF1ab/nsp13439G439VgGagTa11AY.200.000039
ORF1ab/nsp13439G439EgGagAa11AY.200.000039
ORF1ab/nsp13439G439RGgaAga11AY.230.00007
ORF1ab/nsp13439G439VgGagTa11AY.250.000006
ORF1ab/nsp13439G439GggAggG11AY.260.000028
ORF1ab/nsp13439G439GggAggG11AY.290.000016
ORF1ab/nsp13439G439EgGagAa11AY.30.00001
ORF1ab/nsp13439G439GggAggC11AY.330.000067
ORF1ab/nsp13439G439GggAggG11AY.360.000148
ORF1ab/nsp13439G439RGgaAga11AY.380.000499
ORF1ab/nsp13439G439GggAggG11AY.390.000025
ORF1ab/nsp13439G439VgGagTa11AY.40.000002
ORF1ab/nsp13439G439VgGagTa11AY.440.000006
ORF1ab/nsp13439G439RGgaAga11AY.490.003195
ORF1ab/nsp13439G439EgGagAa11AY.50.000021
ORF1ab/nsp13439G439RGgaAga11AY.540.000095
ORF1ab/nsp13439G439RGgaAga11AY.60.000041
ORF1ab/nsp13439G439VgGagTa11AY.610.000105
ORF1ab/nsp13439G439LGGaTTa11AY.620.000436
ORF1ab/nsp13439G439delGGA---11AY.670.000464
ORF1ab/nsp13439G439VgGagTa11AY.7.20.000559
ORF1ab/nsp13439G439GggAggG11AY.710.000475
ORF1ab/nsp13439G439GggAggG11AY.950.000761
ORF1ab/nsp13439G439RGgaAga11AY.980.000079
ORF1ab/nsp13439G439delGGA---11AY.99.10.001553
ORF1ab/nsp13439G439GggAggG11B0.000128
ORF1ab/nsp13439G439EgGagAa11B.10.000009
ORF1ab/nsp13439G439delGGA---11B.1.10.000018
ORF1ab/nsp13439G439XGgaTga11B.1.10.000018
ORF1ab/nsp13439G439RGgaAga11B.1.1.1250.010204
ORF1ab/nsp13439G439GggAggG11B.1.1.1410.002012
ORF1ab/nsp13439G439RGgaAga11B.1.1.1960.005714
ORF1ab/nsp13439G439RGgaAga11B.1.1.1980.001468
ORF1ab/nsp13439G439VgGagTa11B.1.1.2100.005714
ORF1ab/nsp13439G439RGgaAga11B.1.1.2360.006897
ORF1ab/nsp13439G439EgGagAa11B.1.1.2550.00303
ORF1ab/nsp13439G439RGgaAga11B.1.1.2630.001558
ORF1ab/nsp13439G439RGgaAga11B.1.1.3050.003861
ORF1ab/nsp13439G439VgGagTa11B.1.1.3100.015152
ORF1ab/nsp13439G439EgGagAa11B.1.1.3160.000925
ORF1ab/nsp13439G439RGgaAga11B.1.1.3260.001761
ORF1ab/nsp13439G439RGgaAga11B.1.1.330.000421
ORF1ab/nsp13439G439RGgaAga11B.1.1.370.000193
ORF1ab/nsp13439G439GggAggG11B.1.1.3830.0625
ORF1ab/nsp13439G439GggAggG11B.1.1.4070.041667
ORF1ab/nsp13439G439VgGagTa11B.1.1.4330.001425
ORF1ab/nsp13439G439RGgaAga11B.1.1.4640.001473
ORF1ab/nsp13439G439GggAggG11B.1.1.5190.00004
ORF1ab/nsp13439G439RGgaAga11B.1.1.5190.00004
ORF1ab/nsp13439G439RGgaAga11B.1.1.5220.017241
ORF1ab/nsp13439G439XGgaTga11B.1.1.70.000001
ORF1ab/nsp13439G439XGgaTga11B.1.1.700.000341
ORF1ab/nsp13439G439RGgaAga11B.1.1.80.003584
ORF1ab/nsp13439G439RGgaAga11B.1.1610.017241
ORF1ab/nsp13439G439EgGagAa11B.1.1770.000013
ORF1ab/nsp13439G439GggAggG11B.1.177.170.000821
ORF1ab/nsp13439G439RGgaAga11B.1.177.440.000519
ORF1ab/nsp13439G439RGgaAga11B.1.177.750.001041
ORF1ab/nsp13439G439RGgaAga11B.1.177.840.006667
ORF1ab/nsp13439G439delGGA---11B.1.1790.003759
ORF1ab/nsp13439G439RGgaAga11B.1.214.20.0006
ORF1ab/nsp13439G439RGgaAga11B.1.2430.00007
ORF1ab/nsp13439G439delGGA---11B.1.2580.000067
ORF1ab/nsp13439G439VgGagTa11B.1.258.140.00098
ORF1ab/nsp13439G439RGgaAga11B.1.258.210.007752
ORF1ab/nsp13439G439RGgaAga11B.1.2650.001271
ORF1ab/nsp13439G439RGgaAga11B.1.2770.02381
ORF1ab/nsp13439G439GggAggC11B.1.3110.000275
ORF1ab/nsp13439G439del1Gga-ga11B.1.3510.00003
ORF1ab/nsp13439G439XGgaTga11B.1.3890.001002
ORF1ab/nsp13439G439delGGA---11B.1.4150.014286
ORF1ab/nsp13439G439RGgaAga11B.1.4270.00005
ORF1ab/nsp13439G439XGgaTga11B.1.4290.000024
ORF1ab/nsp13439G439RGgaAga11B.1.4660.023256
ORF1ab/nsp13439G439RGgaAga11B.1.4680.005714
ORF1ab/nsp13439G439GggAggC11B.1.4700.001404
ORF1ab/nsp13439G439VgGagTa11B.1.5170.000427
ORF1ab/nsp13439G439EgGagAa11B.1.5250.000113
ORF1ab/nsp13439G439GggAggG11B.1.5260.000024
ORF1ab/nsp13439G439RGgaAga11B.1.5330.009615
ORF1ab/nsp13439G439GggAggC11B.1.5640.000426
ORF1ab/nsp13439G439RGgaAga11B.1.5810.009434
ORF1ab/nsp13439G439XGgaTga11B.1.5870.001898
ORF1ab/nsp13439G439XGgaTga11B.1.5960.000087
ORF1ab/nsp13439G439RGgaCga11B.1.5980.016949
ORF1ab/nsp13439G439RGgaAga11B.1.617.10.000129
ORF1ab/nsp13439G439XGgaTga11B.1.617.20.000004
ORF1ab/nsp13439G439delGGA---11B.1.617.20.000004
ORF1ab/nsp13439G439GggAggG11B.1.6230.000536
ORF1ab/nsp13439G439RGgaAga11B.1.6280.000352
ORF1ab/nsp13439G439delGGA---11B.1.6300.005236
ORF1ab/nsp13439G439RGgaAga11B.1.930.000934
ORF1ab/nsp13439G439GggAggG11B.30.000831
ORF1ab/nsp13439G439VgGagTa11B.4.50.011905
ORF1ab/nsp13439G439RGgaAga11B.400.000364
ORF1ab/nsp13439G439GggAggG11B.6.60.000889
ORF1ab/nsp13439G439XGgaTga11B.6.60.000889
ORF1ab/nsp13439G439VgGagTa11B.6.60.000889
ORF1ab/nsp13439G439GggAggG11C.110.010638
ORF1ab/nsp13439G439XGgaTga11C.170.055556
ORF1ab/nsp13439G439EgGagAa11D.20.000075
ORF1ab/nsp13439G439RGgaCga11D.20.000075
ORF1ab/nsp13439G439RGgaAga11P.1.120.000484
ORF1ab/nsp13439G439RGgaAga11P.1.140.000048
ORF1ab/nsp13439G439EgGagAa11P.20.000187
ORF1ab/nsp13439G439GggAggG11P.70.004367
ORF1ab/nsp13439G439RGgaAga11Q.10.000126
ORF1ab/nsp13439G439GggAggC11Q.30.000145
ORF1ab/nsp13439G439KGGaAAa11R.10.00009
ORF1ab/nsp13439G439delGGA---11U.30.003861