CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 438

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13438L438LL5762LsynctCctT22707221610.97595517548-17550
ORF1ab/nsp13438L438LL5762LsynctCctA227075270.023208717548-17550
ORF1ab/nsp13438L438LL5762LsynctCctG22707170.00074866817548-17550
ORF1ab/nsp13438L438LL5762LsynCtCTtA2270720.000088078617548-17550
ORF1ab/nsp13438L438IL5762InonsynCtcAtc2001080.5417548-17550
ORF1ab/nsp13438L438IL5762InonsynCtCAtT200920.4617548-17550
ORF1ab/nsp13438L438RL5762RnonsyncTCcGA59340.57627117548-17550
ORF1ab/nsp13438L438RL5762RnonsyncTccGc59250.42372917548-17550
ORF1ab/nsp13438L438FL5762FnonsynCtcTtc3636117548-17550
ORF1ab/nsp13438L438delL5762deldelCTC---2424117548-17550
ORF1ab/nsp13438L438PL5762PnonsyncTccCc750.71428617548-17550
ORF1ab/nsp13438L438PL5762PnonsyncTCcCT720.28571417548-17550
ORF1ab/nsp13438L438NL5762NnonsynCTcAAc420.517548-17550
ORF1ab/nsp13438L438NL5762NnonsynCTCAAT420.517548-17550
ORF1ab/nsp13438L438VL5762VnonsynCtcGtc33117548-17550
ORF1ab/nsp13438L438HL5762HnonsyncTccAc320.66666717548-17550
ORF1ab/nsp13438L438del1L5762del1delctCct-320.66666717548-17550
ORF1ab/nsp13438L438del1L5762del1delcTCcC-310.33333317548-17550
ORF1ab/nsp13438L438HL5762HnonsyncTCcAT310.33333317548-17550
ORF1ab/nsp13438L438del2L5762del2delCTCM--22117548-17550
ORF1ab/nsp13438L438QL5762QnonsyncTCcAA22117548-17550

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13438L438LctCctT2216122707All0.004239
ORF1ab/nsp13438L438LctCctA52722707All0.000101
ORF1ab/nsp13438L438LctCctG1722707All0.000003
ORF1ab/nsp13438L438LCtCTtA222707All0
ORF1ab/nsp13438L438LctCctT1062110621AY.250.063883
ORF1ab/nsp13438L438LctCctT18621877B.1.1.70.001667
ORF1ab/nsp13438L438LctCctG91877B.1.1.70.000008
ORF1ab/nsp13438L438LctCctA61877B.1.1.70.000005
ORF1ab/nsp13438L438LctCctT14111418AY.40.002196
ORF1ab/nsp13438L438LctCctA51418AY.40.000008
ORF1ab/nsp13438L438LctCctG21418AY.40.000003
ORF1ab/nsp13438L438LctCctT11881188B.1.1.3480.94586
ORF1ab/nsp13438L438LctCctT529571B.1.617.20.001992
ORF1ab/nsp13438L438LctCctA42571B.1.617.20.000158
ORF1ab/nsp13438L438LctCctT470470B.1.5170.200683
ORF1ab/nsp13438L438LctCctT432436AY.430.001914
ORF1ab/nsp13438L438LctCctA4436AY.430.000018
ORF1ab/nsp13438L438LctCctT396414B.10.003627
ORF1ab/nsp13438L438LctCctA18414B.10.000165
ORF1ab/nsp13438L438LctCctA352387AY.270.022782
ORF1ab/nsp13438L438LctCctT35387AY.270.002265
ORF1ab/nsp13438L438LctCctT328337AY.440.001996
ORF1ab/nsp13438L438LctCctA9337AY.440.000055
ORF1ab/nsp13438L438LctCctT269271B.1.20.002369
ORF1ab/nsp13438L438LctCctA2271B.1.20.000018
ORF1ab/nsp13438L438LctCctT246247B.1.1.3170.101276
ORF1ab/nsp13438L438LctCctA1247B.1.1.3170.000412
ORF1ab/nsp13438L438LctCctT216224AY.30.002148
ORF1ab/nsp13438L438LctCctA7224AY.30.00007
ORF1ab/nsp13438L438LctCctG1224AY.30.00001
ORF1ab/nsp13438L438ICtcAtc108200All0.000021
ORF1ab/nsp13438L438ICtCAtT92200All0.000018
ORF1ab/nsp13438L438LctCctT199200AY.290.003139
ORF1ab/nsp13438L438LctCctG1200AY.290.000016
ORF1ab/nsp13438L438LctCctT192194AY.260.005436
ORF1ab/nsp13438L438LctCctA2194AY.260.000057
ORF1ab/nsp13438L438LctCctT160167AY.1030.000993
ORF1ab/nsp13438L438LctCctA5167AY.1030.000031
ORF1ab/nsp13438L438LctCctG2167AY.1030.000012
ORF1ab/nsp13438L438LctCctT154157B.1.10.002794
ORF1ab/nsp13438L438LctCctA3157B.1.10.000054
ORF1ab/nsp13438L438LctCctT156156B.1.2580.010381
ORF1ab/nsp13438L438LctCctT138144P.10.002174
ORF1ab/nsp13438L438LctCctA6144P.10.000095
ORF1ab/nsp13438L438LctCctT139139AY.940.061532
ORF1ab/nsp13438L438LctCctT128128B.1.1.700.043656
ORF1ab/nsp13438L438ICtCAtT92120B.1.1.70.000082
ORF1ab/nsp13438L438ICtcAtc28120B.1.1.70.000025
ORF1ab/nsp13438L438LctCctT115118AY.390.002842
ORF1ab/nsp13438L438LctCctA3118AY.390.000074
ORF1ab/nsp13438L438LctCctT109115AY.1020.00289
ORF1ab/nsp13438L438LctCctA6115AY.1020.000159
ORF1ab/nsp13438L438LctCctT112113B.1.1770.001475
ORF1ab/nsp13438L438LctCctA1113B.1.1770.000013
ORF1ab/nsp13438L438LctCctT104105B.1.4290.002447
ORF1ab/nsp13438L438LctCctA1105B.1.4290.000024
ORF1ab/nsp13438L438LctCctT7777B.1.3690.021962
ORF1ab/nsp13438L438LctCctT7676B.1.1.40.22619
ORF1ab/nsp13438L438LctCctT7676P.1.140.003633
ORF1ab/nsp13438L438LctCctT7070B.1.1.3110.025072
ORF1ab/nsp13438L438LctCctT6161AY.9.20.002241
ORF1ab/nsp13438L438LctCctT5960AY.1000.002714
ORF1ab/nsp13438L438LctCctA160AY.1000.000046
ORF1ab/nsp13438L438RcTCcGA3459All0.000007
ORF1ab/nsp13438L438RcTccGc2559All0.000005
ORF1ab/nsp13438L438LctCctT5759AY.470.001773
ORF1ab/nsp13438L438LctCctA159AY.470.000031
ORF1ab/nsp13438L438LctCctG159AY.470.000031
ORF1ab/nsp13438L438LctCctT3758AY.4.20.000802
ORF1ab/nsp13438L438LctCctA2158AY.4.20.000455
ORF1ab/nsp13438L438LctCctT5254AY.200.002021
ORF1ab/nsp13438L438LctCctA154AY.200.000039
ORF1ab/nsp13438L438LctCctG154AY.200.000039
ORF1ab/nsp13438L438LctCctT5454B.1.3510.001605
ORF1ab/nsp13438L438LctCctT5252B.1.1.5190.002065
ORF1ab/nsp13438L438LctCctT4848B.1.5260.001128
ORF1ab/nsp13438L438LctCctT4343B.1.6210.003806
ORF1ab/nsp13438L438LctCctT3838B.1.177.160.025249
ORF1ab/nsp13438L438LctCctT3737B.1.1.2160.032947
ORF1ab/nsp13438L438LctCctT3737B.1.177.170.030378
ORF1ab/nsp13438L438FCtcTtc3636All0.000007
ORF1ab/nsp13438L438LctCctT3535C.370.004062
ORF1ab/nsp13438L438LctCctT3434B.1.1.280.010582
ORF1ab/nsp13438L438LctCctT3131C.350.023994
ORF1ab/nsp13438L438LctCctT3030B.1.1600.000936
ORF1ab/nsp13438L438LctCctT2929B.1.1700.125
ORF1ab/nsp13438L438LctCctT2727AY.750.001513
ORF1ab/nsp13438L438LctCctT2526B.1.4270.001262
ORF1ab/nsp13438L438LctCctA126B.1.4270.00005
ORF1ab/nsp13438L438LctCctT2626B.1.5640.011073
ORF1ab/nsp13438L438LctCctT2525B.1.6370.001827
ORF1ab/nsp13438L438delCTC---2424All0.000005
ORF1ab/nsp13438L438LctCctT2424AY.1130.003417
ORF1ab/nsp13438L438LctCctT2323AY.99.20.00212
ORF1ab/nsp13438L438LctCctT2222AY.1010.01079
ORF1ab/nsp13438L438LctCctT2222AY.460.00229
ORF1ab/nsp13438L438LctCctT2222Q.80.003628
ORF1ab/nsp13438L438LctCctT2121AY.230.001465
ORF1ab/nsp13438L438RcTCcGA1121B.10.000101
ORF1ab/nsp13438L438RcTccGc1021B.10.000092
ORF1ab/nsp13438L438LctCctT2020AY.1170.00169
ORF1ab/nsp13438L438LctCctT1920AY.50.000392
ORF1ab/nsp13438L438LctCctA120AY.50.000021
ORF1ab/nsp13438L438LctCctT2020B.1.258.170.002079
ORF1ab/nsp13438L438LctCctT1919AY.46.60.001372
ORF1ab/nsp13438L438LctCctT1919AY.98.10.00092
ORF1ab/nsp13438L438LctCctT1919B.1.1.1760.008348
ORF1ab/nsp13438L438LctCctT1718AY.1200.000632
ORF1ab/nsp13438L438LctCctA118AY.1200.000037
ORF1ab/nsp13438L438LctCctT1818B.1.2340.002375
ORF1ab/nsp13438L438LctCctT1717B.1.2430.001183
ORF1ab/nsp13438L438LctCctT1717B.1.3110.004668
ORF1ab/nsp13438L438LctCctT1717B.1.5960.001481
ORF1ab/nsp13438L438LctCctT1616D.20.001201
ORF1ab/nsp13438L438LctCctT1515AY.510.013636
ORF1ab/nsp13438L438LctCctT1515B.1.1.1280.106383
ORF1ab/nsp13438L438LctCctT1515B.1.1.2140.000832
ORF1ab/nsp13438L438LctCctT1515B.1.2320.00806
ORF1ab/nsp13438L438LctCctT1515P.20.0028
ORF1ab/nsp13438L438LctCctT1414AY.1110.002564
ORF1ab/nsp13438L438LctCctT1414B.1.1.2220.002856
ORF1ab/nsp13438L438LctCctT1414R.10.00126
ORF1ab/nsp13438L438LctCctT913AY.3.10.000767
ORF1ab/nsp13438L438LctCctA413AY.3.10.000341
ORF1ab/nsp13438L438LctCctT1313AY.330.000868
ORF1ab/nsp13438L438LctCctT1213AY.420.000483
ORF1ab/nsp13438L438LctCctA113AY.420.00004
ORF1ab/nsp13438L438LctCctT1213AY.60.000494
ORF1ab/nsp13438L438LctCctA113AY.60.000041
ORF1ab/nsp13438L438LctCctT1313B.1.5250.001471
ORF1ab/nsp13438L438LctCctT1212AY.540.001144
ORF1ab/nsp13438L438LctCctT1212B.1.1.3980.03871
ORF1ab/nsp13438L438FCtcTtc1212B.1.1.70.000011
ORF1ab/nsp13438L438delCTC---1212B.1.1.70.000011
ORF1ab/nsp13438L438ICtcAtc1111AY.1110.002015
ORF1ab/nsp13438L438LctCctT1111AY.140.000968
ORF1ab/nsp13438L438LctCctT1111AY.340.001067
ORF1ab/nsp13438L438LctCctT1111AY.610.001153
ORF1ab/nsp13438L438LctCctT1111AY.850.004699
ORF1ab/nsp13438L438LctCctT1111B.1.1.3070.027848
ORF1ab/nsp13438L438LctCctT1111B.1.351.50.006595
ORF1ab/nsp13438L438LctCctT1111B.1.360.001605
ORF1ab/nsp13438L438LctCctT1111B.1.36.80.011
ORF1ab/nsp13438L438LctCctT1010A.270.016556
ORF1ab/nsp13438L438LctCctT810AY.1190.000282
ORF1ab/nsp13438L438LctCctA210AY.1190.000071
ORF1ab/nsp13438L438LctCctT1010B.1.438.10.001073
ORF1ab/nsp13438L438LctCctT99A.2.50.004491
ORF1ab/nsp13438L438LctCctT99AD.20.001971
ORF1ab/nsp13438L438LctCctT99AY.1210.001218
ORF1ab/nsp13438L438LctCctT99AY.690.00168
ORF1ab/nsp13438L438LctCctT89B0.001022
ORF1ab/nsp13438L438LctCctA19B0.000128
ORF1ab/nsp13438L438LctCctT78AY.450.000852
ORF1ab/nsp13438L438LctCctA18AY.450.000122
ORF1ab/nsp13438L438LctCctT88AY.570.005249
ORF1ab/nsp13438L438LctCctT88B.1.1.1390.181818
ORF1ab/nsp13438L438LctCctT88B.1.1.370.001543
ORF1ab/nsp13438L438LctCctT88B.1.1.3970.018018
ORF1ab/nsp13438L438LctCctT88B.1.1.4320.010127
ORF1ab/nsp13438L438ICtcAtc88B.1.3490.005718
ORF1ab/nsp13438L438LctCctT88B.1.3960.005646
ORF1ab/nsp13438L438LctCctT88B.1.6090.003835
ORF1ab/nsp13438L438PcTccCc57All0.000001
ORF1ab/nsp13438L438PcTCcCT27All0
ORF1ab/nsp13438L438LctCctT77AY.1180.000439
ORF1ab/nsp13438L438LctCctT77AY.46.40.001152
ORF1ab/nsp13438L438LctCctT77AY.710.003325
ORF1ab/nsp13438L438LctCctT77AY.980.000553
ORF1ab/nsp13438L438LctCctT77B.1.177.570.001967
ORF1ab/nsp13438L438LctCctT77B.1.177.600.001529
ORF1ab/nsp13438L438LctCctT77P.1.70.002235
ORF1ab/nsp13438L438LctCctT77P.50.09589
ORF1ab/nsp13438L438LctCctT77Q.10.000884
ORF1ab/nsp13438L438LctCctT66A.210.01662
ORF1ab/nsp13438L438LctCctT66AY.29.10.001323
ORF1ab/nsp13438L438LctCctT66AY.4.2.10.000894
ORF1ab/nsp13438L438LctCctT66AY.9.10.000502
ORF1ab/nsp13438L438FCtcTtc66B.10.000055
ORF1ab/nsp13438L438LctCctT66B.1.1.2840.000644
ORF1ab/nsp13438L438LctCctT66B.1.1.4820.139535
ORF1ab/nsp13438L438LctCctT66B.1.177.210.000459
ORF1ab/nsp13438L438LctCctT66B.1.177.40.001266
ORF1ab/nsp13438L438LctCctT66B.1.2060.004894
ORF1ab/nsp13438L438ICtcAtc66B.1.617.20.000023
ORF1ab/nsp13438L438LctCctT66Q.30.00087
ORF1ab/nsp13438L438LctCctT55AY.360.000741
ORF1ab/nsp13438L438ICtcAtc55AY.390.000124
ORF1ab/nsp13438L438LctCctT55AY.39.10.000198
ORF1ab/nsp13438L438LctCctT55B.1.1.2440.076923
ORF1ab/nsp13438L438RcTCcGA35B.1.20.000026
ORF1ab/nsp13438L438RcTccGc25B.1.20.000018
ORF1ab/nsp13438L438LctCctT55B.1.2210.000355
ORF1ab/nsp13438L438LctCctT55B.1.2400.001078
ORF1ab/nsp13438L438LctCctT55B.1.36.380.00821
ORF1ab/nsp13438L438ICtcAtc55C.370.00058
ORF1ab/nsp13438L438NCTCAAT240.111111
ORF1ab/nsp13438L438NCTcAAc240.111111
ORF1ab/nsp13438L438NCTcAAc24All0
ORF1ab/nsp13438L438NCTCAAT24All0
ORF1ab/nsp13438L438ICtcAtc44AY.1030.000025
ORF1ab/nsp13438L438LctCctT44AY.120.001264
ORF1ab/nsp13438L438LctCctT44AY.160.001519
ORF1ab/nsp13438L438LctCctT34AY.20.001068
ORF1ab/nsp13438L438LctCctA14AY.20.000356
ORF1ab/nsp13438L438LctCctA44AY.240.001724
ORF1ab/nsp13438L438LctCctT44AY.410.001176
ORF1ab/nsp13438L438LctCctT44AY.5.30.00135
ORF1ab/nsp13438L438LctCctT44AY.740.000463
ORF1ab/nsp13438L438LctCctT44AY.920.001149
ORF1ab/nsp13438L438ICtcAtc44B.10.000037
ORF1ab/nsp13438L438ICtcAtc44B.1.10.000073
ORF1ab/nsp13438L438RcTccGc24B.1.10.000036
ORF1ab/nsp13438L438RcTCcGA24B.1.10.000036
ORF1ab/nsp13438L438LctCctT44B.1.1.2690.005413
ORF1ab/nsp13438L438LctCctT44B.1.1.3060.001754
ORF1ab/nsp13438L438LctCctT44B.1.1.500.002716
ORF1ab/nsp13438L438LctCctT44B.1.1.5250.021858
ORF1ab/nsp13438L438LctCctT44B.1.177.530.009569
ORF1ab/nsp13438L438LctCctT44B.1.36.180.001681
ORF1ab/nsp13438L438LctCctT44B.1.617.10.000516
ORF1ab/nsp13438L438LctCctT44P.1.150.000929
ORF1ab/nsp13438L438LctCctT33A.2.5.10.014423
ORF1ab/nsp13438L438VCtcGtc33All0.000001
ORF1ab/nsp13438L438HcTccAc23All0
ORF1ab/nsp13438L438del1ctCct-23All0
ORF1ab/nsp13438L438del1cTCcC-13All0
ORF1ab/nsp13438L438HcTCcAT13All0
ORF1ab/nsp13438L438LctCctT33AY.1070.001398
ORF1ab/nsp13438L438LctCctT23AY.1100.000225
ORF1ab/nsp13438L438LctCctA13AY.1100.000113
ORF1ab/nsp13438L438LctCctT33AY.320.001597
ORF1ab/nsp13438L438LctCctT33AY.34.10.00153
ORF1ab/nsp13438L438LctCctT33AY.350.000699
ORF1ab/nsp13438L438ICtcAtc33AY.40.000005
ORF1ab/nsp13438L438LctCctT33AY.550.002752
ORF1ab/nsp13438L438LctCctT33AY.70.000588
ORF1ab/nsp13438L438LctCctT33AY.730.001996
ORF1ab/nsp13438L438LctCctT33AY.75.10.000541
ORF1ab/nsp13438L438LctCctT33AY.820.004071
ORF1ab/nsp13438L438LctCctT33AY.90.000203
ORF1ab/nsp13438L438RcTCcGA23B0.000256
ORF1ab/nsp13438L438RcTccGc13B0.000128
ORF1ab/nsp13438L438LctCctT33B.1.1.10.00098
ORF1ab/nsp13438L438LctCctT33B.1.1.1740.010135
ORF1ab/nsp13438L438LctCctT33B.1.1.1800.032258
ORF1ab/nsp13438L438LctCctT33B.1.1.4170.008108
ORF1ab/nsp13438L438LctCctT33B.1.1.5260.010638
ORF1ab/nsp13438L438RcTCcGA23B.1.1.70.000002
ORF1ab/nsp13438L438RcTccGc13B.1.1.70.000001
ORF1ab/nsp13438L438LctCctT23B.1.1110.00235
ORF1ab/nsp13438L438LctCctA13B.1.1110.001175
ORF1ab/nsp13438L438RcTCcGA23B.1.1770.000026
ORF1ab/nsp13438L438RcTccGc13B.1.1770.000013
ORF1ab/nsp13438L438LctCctT33B.1.177.120.000455
ORF1ab/nsp13438L438FCtcTtc33B.1.20.000026
ORF1ab/nsp13438L438ICtcAtc33B.1.2580.0002
ORF1ab/nsp13438L438LctCctT33B.1.3560.005181
ORF1ab/nsp13438L438LctCctT33B.1.4160.003807
ORF1ab/nsp13438L438LctCctT33B.1.4200.03125
ORF1ab/nsp13438L438LctCctT33B.1.5600.013889
ORF1ab/nsp13438L438LctCctT33C.36.30.001702
ORF1ab/nsp13438L438QcTCcAA220.111111
ORF1ab/nsp13438L438del2CTCM--220.111111
ORF1ab/nsp13438L438HcTccAc220.111111
ORF1ab/nsp13438L438LctCctT22A.10.000564
ORF1ab/nsp13438L438RcTccGc12A.20.000662
ORF1ab/nsp13438L438LctCctA12A.20.000662
ORF1ab/nsp13438L438RcTCcGA12A.20.000662
ORF1ab/nsp13438L438LctCctT12A.20.000662
ORF1ab/nsp13438L438RcTCcGA12A.2.40.003367
ORF1ab/nsp13438L438RcTccGc12A.2.40.003367
ORF1ab/nsp13438L438del2CTCM--22All0
ORF1ab/nsp13438L438QcTCcAA22All0
ORF1ab/nsp13438L438LctCctT22AY.1050.001286
ORF1ab/nsp13438L438LctCctT22AY.1140.000462
ORF1ab/nsp13438L438LctCctT22AY.1160.000574
ORF1ab/nsp13438L438ICtcAtc22AY.1170.000169
ORF1ab/nsp13438L438ICtcAtc22AY.1190.000071
ORF1ab/nsp13438L438LctCctT22AY.130.000322
ORF1ab/nsp13438L438LctCctT22AY.16.10.00094
ORF1ab/nsp13438L438LctCctT22AY.370.000632
ORF1ab/nsp13438L438LctCctT22AY.4.40.000818
ORF1ab/nsp13438L438LctCctT22AY.4.50.000215
ORF1ab/nsp13438L438delCTC---22AY.4.50.000215
ORF1ab/nsp13438L438ICtcAtc22AY.430.000009
ORF1ab/nsp13438L438ICtcAtc22AY.440.000012
ORF1ab/nsp13438L438LctCctT22AY.46.20.001271
ORF1ab/nsp13438L438LctCctT22AY.46.50.000397
ORF1ab/nsp13438L438LctCctT22AY.5.40.000553
ORF1ab/nsp13438L438LctCctT22AY.590.001059
ORF1ab/nsp13438L438LctCctA12AY.620.000436
ORF1ab/nsp13438L438LctCctT12AY.620.000436
ORF1ab/nsp13438L438LctCctA12AY.650.000533
ORF1ab/nsp13438L438LctCctT12AY.650.000533
ORF1ab/nsp13438L438LctCctT22AY.680.000547
ORF1ab/nsp13438L438LctCctT22AY.7.10.000225
ORF1ab/nsp13438L438LctCctT22AY.700.000417
ORF1ab/nsp13438L438LctCctT22AY.830.003448
ORF1ab/nsp13438L438LctCctT22AY.880.001768
ORF1ab/nsp13438L438LctCctT22AY.910.001461
ORF1ab/nsp13438L438PcTccCc22B.10.000018
ORF1ab/nsp13438L438FCtcTtc22B.1.10.000036
ORF1ab/nsp13438L438LctCctT22B.1.1.1010.02
ORF1ab/nsp13438L438LctCctT22B.1.1.1090.08
ORF1ab/nsp13438L438LctCctT22B.1.1.1610.007067
ORF1ab/nsp13438L438LctCctT22B.1.1.2100.011429
ORF1ab/nsp13438L438LctCctT22B.1.1.2200.003717
ORF1ab/nsp13438L438LctCctT22B.1.1.2290.011494
ORF1ab/nsp13438L438LctCctT22B.1.1.2580.006515
ORF1ab/nsp13438L438LctCctT22B.1.1.2800.006173
ORF1ab/nsp13438L438LCtCTtA22B.1.1.2970.004474
ORF1ab/nsp13438L438LctCctT22B.1.1.330.000842
ORF1ab/nsp13438L438LctCctT22B.1.1.3360.033333
ORF1ab/nsp13438L438LctCctT22B.1.1.3720.001377
ORF1ab/nsp13438L438LctCctT22B.1.1.390.001019
ORF1ab/nsp13438L438LctCctT22B.1.1.4160.00181
ORF1ab/nsp13438L438LctCctT22B.1.1.4200.002012
ORF1ab/nsp13438L438RcTccGc12B.1.1.5120.028571
ORF1ab/nsp13438L438RcTCcGA12B.1.1.5120.028571
ORF1ab/nsp13438L438ICtcAtc22B.1.1.5190.000079
ORF1ab/nsp13438L438RcTccGc12B.1.1110.001175
ORF1ab/nsp13438L438RcTCcGA12B.1.1110.001175
ORF1ab/nsp13438L438LctCctT22B.1.160.260.004843
ORF1ab/nsp13438L438LctCctT22B.1.177.100.001756
ORF1ab/nsp13438L438LctCctT22B.1.177.320.002699
ORF1ab/nsp13438L438LctCctT22B.1.177.460.001837
ORF1ab/nsp13438L438LctCctT22B.1.177.70.00033
ORF1ab/nsp13438L438ICtcAtc22B.1.20.000018
ORF1ab/nsp13438L438LctCctT22B.1.258.150.037736
ORF1ab/nsp13438L438LctCctT22B.1.258.210.015504
ORF1ab/nsp13438L438LctCctT22B.1.2800.014286
ORF1ab/nsp13438L438LctCctT22B.1.3330.021053
ORF1ab/nsp13438L438LctCctT22B.1.3360.004878
ORF1ab/nsp13438L438LctCctT22B.1.36.390.004435
ORF1ab/nsp13438L438LctCctT22B.1.36.70.008
ORF1ab/nsp13438L438LctCctT22B.1.3610.002577
ORF1ab/nsp13438L438LctCctT22B.1.3620.003082
ORF1ab/nsp13438L438LctCctT22B.1.3910.002255
ORF1ab/nsp13438L438LctCctT22B.1.4000.000858
ORF1ab/nsp13438L438RcTCcGA12B.1.4270.00005
ORF1ab/nsp13438L438RcTccGc12B.1.4270.00005
ORF1ab/nsp13438L438RcTCcGA12B.1.4290.000024
ORF1ab/nsp13438L438RcTccGc12B.1.4290.000024
ORF1ab/nsp13438L438LctCctT22B.1.466.20.000782
ORF1ab/nsp13438L438LctCctT22B.1.4690.00722
ORF1ab/nsp13438L438RcTccGc12B.1.5030.002488
ORF1ab/nsp13438L438RcTCcGA12B.1.5030.002488
ORF1ab/nsp13438L438LctCctT22B.1.517.10.010526
ORF1ab/nsp13438L438LctCctT22B.1.5560.015038
ORF1ab/nsp13438L438LctCctT22B.1.5820.000981
ORF1ab/nsp13438L438LctCctT22B.1.5950.000522
ORF1ab/nsp13438L438LctCctT22B.1.5970.009259
ORF1ab/nsp13438L438RcTccGc12B.1.6020.006536
ORF1ab/nsp13438L438LctCctA12B.1.6020.006536
ORF1ab/nsp13438L438RcTCcGA12B.1.6020.006536
ORF1ab/nsp13438L438LctCctT12B.1.6020.006536
ORF1ab/nsp13438L438LctCctT22B.400.000729
ORF1ab/nsp13438L438LctCctT22B.550.0059
ORF1ab/nsp13438L438LctCctT22C.320.046512
ORF1ab/nsp13438L438LctCctT22N.50.003534
ORF1ab/nsp13438L438LctCctT12P.1.10.000318
ORF1ab/nsp13438L438LctCctA12P.1.10.000318
ORF1ab/nsp13438L438LctCctT22P.1.160.000748
ORF1ab/nsp13438L438LctCctT22P.1.20.002312
ORF1ab/nsp13438L438FCtcTtc11A0.000387
ORF1ab/nsp13438L438LctCctA11A.190.009434
ORF1ab/nsp13438L438LctCctA11A.2.40.003367
ORF1ab/nsp13438L438ICtcAtc11A.23.10.000704
ORF1ab/nsp13438L438LctCctT11A.23.10.000704
ORF1ab/nsp13438L438LctCctT11A.280.002646
ORF1ab/nsp13438L438LctCctT11A.50.001923
ORF1ab/nsp13438L438delCTC---11AD.20.000219
ORF1ab/nsp13438L438ICtcAtc11AY.1000.000046
ORF1ab/nsp13438L438LctCctT11AY.1040.001984
ORF1ab/nsp13438L438LctCctT11AY.1060.000335
ORF1ab/nsp13438L438LctCctT11AY.1090.00074
ORF1ab/nsp13438L438LctCctT11AY.110.001339
ORF1ab/nsp13438L438LctCctT11AY.1150.005208
ORF1ab/nsp13438L438FCtcTtc11AY.1160.000287
ORF1ab/nsp13438L438LctCctT11AY.116.10.000311
ORF1ab/nsp13438L438LctCctT11AY.120.2.10.000498
ORF1ab/nsp13438L438LctCctT11AY.190.00114
ORF1ab/nsp13438L438LctCctT11AY.23.10.000417
ORF1ab/nsp13438L438ICtcAtc11AY.250.000006
ORF1ab/nsp13438L438LctCctT11AY.300.000396
ORF1ab/nsp13438L438LctCctT11AY.310.018519
ORF1ab/nsp13438L438ICtcAtc11AY.380.000499
ORF1ab/nsp13438L438FCtcTtc11AY.40.000002
ORF1ab/nsp13438L438ICtcAtc11AY.4.2.10.000149
ORF1ab/nsp13438L438FCtcTtc11AY.4.50.000107
ORF1ab/nsp13438L438LctCctT11AY.400.000964
ORF1ab/nsp13438L438VCtcGtc11AY.430.000004
ORF1ab/nsp13438L438FCtcTtc11AY.430.000004
ORF1ab/nsp13438L438PcTccCc11AY.440.000006
ORF1ab/nsp13438L438FCtcTtc11AY.450.000122
ORF1ab/nsp13438L438LctCctT11AY.46.10.001027
ORF1ab/nsp13438L438LctCctT11AY.480.000465
ORF1ab/nsp13438L438LctCctT11AY.580.000907
ORF1ab/nsp13438L438LctCctT11AY.640.000595
ORF1ab/nsp13438L438delCTC---11AY.670.000464
ORF1ab/nsp13438L438LctCctT11AY.7.20.000559
ORF1ab/nsp13438L438LctCctT11AY.720.001361
ORF1ab/nsp13438L438LctCctT11AY.770.001127
ORF1ab/nsp13438L438LctCctT11AY.790.001211
ORF1ab/nsp13438L438LctCctT11AY.840.000437
ORF1ab/nsp13438L438LctCctT11AY.930.000273
ORF1ab/nsp13438L438LctCctT11AY.960.002075
ORF1ab/nsp13438L438delCTC---11AY.99.10.001553
ORF1ab/nsp13438L438LctCctT11AZ.20.000821
ORF1ab/nsp13438L438LctCctT11AZ.50.003509
ORF1ab/nsp13438L438PcTCcCT11B0.000128
ORF1ab/nsp13438L438delCTC---11B.10.000009
ORF1ab/nsp13438L438LctCctT11B.1.1.100.001115
ORF1ab/nsp13438L438del1ctCct-11B.1.1.1010.01
ORF1ab/nsp13438L438LctCctT11B.1.1.1380.006061
ORF1ab/nsp13438L438LctCctT11B.1.1.1440.028571
ORF1ab/nsp13438L438LctCctT11B.1.1.1630.007634
ORF1ab/nsp13438L438LctCctT11B.1.1.1700.001247
ORF1ab/nsp13438L438LctCctT11B.1.1.1710.003676
ORF1ab/nsp13438L438LctCctT11B.1.1.1720.018182
ORF1ab/nsp13438L438LctCctT11B.1.1.1980.001468
ORF1ab/nsp13438L438ICtcAtc11B.1.1.2140.000055
ORF1ab/nsp13438L438FCtcTtc11B.1.1.2140.000055
ORF1ab/nsp13438L438LctCctT11B.1.1.2170.003636
ORF1ab/nsp13438L438LctCctT11B.1.1.2210.010101
ORF1ab/nsp13438L438LctCctT11B.1.1.2280.003049
ORF1ab/nsp13438L438LctCctT11B.1.1.2320.001815
ORF1ab/nsp13438L438LctCctT11B.1.1.2340.012048
ORF1ab/nsp13438L438LctCctT11B.1.1.2360.006897
ORF1ab/nsp13438L438LctCctT11B.1.1.2410.00207
ORF1ab/nsp13438L438LctCctT11B.1.1.3050.003861
ORF1ab/nsp13438L438ICtcAtc11B.1.1.3060.000438
ORF1ab/nsp13438L438LctCctT11B.1.1.3440.010753
ORF1ab/nsp13438L438LctCctT11B.1.1.3510.002793
ORF1ab/nsp13438L438LctCctT11B.1.1.3540.004386
ORF1ab/nsp13438L438LctCctT11B.1.1.3550.015385
ORF1ab/nsp13438L438LctCctT11B.1.1.3680.003086
ORF1ab/nsp13438L438RcTCcGA11B.1.1.3720.000689
ORF1ab/nsp13438L438LctCctT11B.1.1.4090.002833
ORF1ab/nsp13438L438LctCctT11B.1.1.4130.006897
ORF1ab/nsp13438L438LctCctT11B.1.1.4330.001425
ORF1ab/nsp13438L438LctCctT11B.1.1.440.00241
ORF1ab/nsp13438L438LctCctT11B.1.1.4420.018519
ORF1ab/nsp13438L438LctCctT11B.1.1.4480.002033
ORF1ab/nsp13438L438LctCctT11B.1.1.4620.008621
ORF1ab/nsp13438L438LctCctT11B.1.1.4850.016667
ORF1ab/nsp13438L438LctCctT11B.1.1.5070.008696
ORF1ab/nsp13438L438LctCctA11B.1.1.5120.028571
ORF1ab/nsp13438L438LctCctT11B.1.1.5140.038462
ORF1ab/nsp13438L438LctCctT11B.1.1.5230.001563
ORF1ab/nsp13438L438del1ctCct-11B.1.1.70.000001
ORF1ab/nsp13438L438PcTccCc11B.1.1.70.000001
ORF1ab/nsp13438L438LctCctT11B.1.1.830.00271
ORF1ab/nsp13438L438LctCctT11B.1.1.890.006061
ORF1ab/nsp13438L438LctCctT11B.1.1100.004525
ORF1ab/nsp13438L438LctCctT11B.1.110.30.000718
ORF1ab/nsp13438L438LctCctT11B.1.1490.003425
ORF1ab/nsp13438L438LctCctT11B.1.1570.002985
ORF1ab/nsp13438L438LctCctT11B.1.160.160.000929
ORF1ab/nsp13438L438LctCctT11B.1.1620.005025
ORF1ab/nsp13438L438ICtcAtc11B.1.1770.000013
ORF1ab/nsp13438L438FCtcTtc11B.1.177.120.000152
ORF1ab/nsp13438L438LctCctT11B.1.177.200.001517
ORF1ab/nsp13438L438LctCctT11B.1.177.440.000519
ORF1ab/nsp13438L438FCtcTtc11B.1.177.440.000519
ORF1ab/nsp13438L438LctCctT11B.1.177.50.001242
ORF1ab/nsp13438L438LctCctT11B.1.177.580.001332
ORF1ab/nsp13438L438LctCctT11B.1.177.690.001484
ORF1ab/nsp13438L438PcTCcCT11B.1.177.730.000566
ORF1ab/nsp13438L438LctCctT11B.1.177.750.001041
ORF1ab/nsp13438L438LctCctT11B.1.177.770.000726
ORF1ab/nsp13438L438LctCctT11B.1.177.800.001912
ORF1ab/nsp13438L438LctCctT11B.1.177.860.000183
ORF1ab/nsp13438L438LctCctT11B.1.177.870.000728
ORF1ab/nsp13438L438delCTC---11B.1.1790.003759
ORF1ab/nsp13438L438del1cTCcC-11B.1.20.000009
ORF1ab/nsp13438L438FCtcTtc11B.1.2060.000816
ORF1ab/nsp13438L438LctCctT11B.1.2140.003663
ORF1ab/nsp13438L438LctCctT11B.1.221.30.000833
ORF1ab/nsp13438L438LctCctT11B.1.2220.001692
ORF1ab/nsp13438L438LctCctT11B.1.230.006061
ORF1ab/nsp13438L438FCtcTtc11B.1.2340.000132
ORF1ab/nsp13438L438VCtcGtc11B.1.2360.002053
ORF1ab/nsp13438L438LctCctT11B.1.2410.000812
ORF1ab/nsp13438L438delCTC---11B.1.2580.000067
ORF1ab/nsp13438L438LctCctT11B.1.258.110.000396
ORF1ab/nsp13438L438LctCctT11B.1.2790.000514
ORF1ab/nsp13438L438LctCctT11B.1.2840.013158
ORF1ab/nsp13438L438LctCctT11B.1.3240.001605
ORF1ab/nsp13438L438LctCctT11B.1.3290.000608
ORF1ab/nsp13438L438LctCctT11B.1.3460.001311
ORF1ab/nsp13438L438LctCctT11B.1.351.20.000303
ORF1ab/nsp13438L438ICtcAtc11B.1.351.30.000876
ORF1ab/nsp13438L438LctCctT11B.1.351.30.000876
ORF1ab/nsp13438L438ICtcAtc11B.1.36.260.002857
ORF1ab/nsp13438L438LctCctT11B.1.36.290.000517
ORF1ab/nsp13438L438LctCctT11B.1.362.20.004717
ORF1ab/nsp13438L438LctCctT11B.1.3670.000792
ORF1ab/nsp13438L438LctCctT11B.1.3750.00082
ORF1ab/nsp13438L438LctCctT11B.1.3820.008929
ORF1ab/nsp13438L438LctCctT11B.1.3880.090909
ORF1ab/nsp13438L438LctCctT11B.1.3980.002976
ORF1ab/nsp13438L438delCTC---11B.1.4150.014286
ORF1ab/nsp13438L438LctCctT11B.1.416.10.001563
ORF1ab/nsp13438L438FCtcTtc11B.1.4290.000024
ORF1ab/nsp13438L438RcTCcGA11B.1.438.10.000107
ORF1ab/nsp13438L438LctCctT11B.1.4780.011765
ORF1ab/nsp13438L438LctCctT11B.1.4800.002488
ORF1ab/nsp13438L438LctCctT11B.1.4970.000315
ORF1ab/nsp13438L438LctCctT11B.1.4990.00105
ORF1ab/nsp13438L438LctCctA11B.1.5030.002488
ORF1ab/nsp13438L438RcTCcGA11B.1.5170.000427
ORF1ab/nsp13438L438LctCctT11B.1.5230.002451
ORF1ab/nsp13438L438LctCctT11B.1.5270.003704
ORF1ab/nsp13438L438LctCctT11B.1.5350.028571
ORF1ab/nsp13438L438LctCctT11B.1.5440.006024
ORF1ab/nsp13438L438LctCctT11B.1.5460.003704
ORF1ab/nsp13438L438LctCctT11B.1.5610.000397
ORF1ab/nsp13438L438FCtcTtc11B.1.5650.00081
ORF1ab/nsp13438L438ICtcAtc11B.1.5750.000303
ORF1ab/nsp13438L438LctCctT11B.1.5760.000907
ORF1ab/nsp13438L438LctCctT11B.1.5770.000687
ORF1ab/nsp13438L438LctCctT11B.1.5800.004065
ORF1ab/nsp13438L438LctCctT11B.1.596.10.009346
ORF1ab/nsp13438L438LctCctT11B.1.6040.017241
ORF1ab/nsp13438L438delCTC---11B.1.617.20.000004
ORF1ab/nsp13438L438RcTCcGA11B.1.617.20.000004
ORF1ab/nsp13438L438VCtcGtc11B.1.617.20.000004
ORF1ab/nsp13438L438LctCctT11B.1.619.10.000641
ORF1ab/nsp13438L438LctCctT11B.1.6270.00202
ORF1ab/nsp13438L438LctCctT11B.1.6290.013333
ORF1ab/nsp13438L438delCTC---11B.1.6300.005236
ORF1ab/nsp13438L438LctCctT11B.1.760.011364
ORF1ab/nsp13438L438LctCctT11B.1.9.40.006135
ORF1ab/nsp13438L438LctCctT11B.1.910.002075
ORF1ab/nsp13438L438LctCctT11B.230.002924
ORF1ab/nsp13438L438LctCctT11B.280.003279
ORF1ab/nsp13438L438LctCctT11B.3.10.001658
ORF1ab/nsp13438L438LctCctT11B.310.003731
ORF1ab/nsp13438L438LctCctT11B.40.002208
ORF1ab/nsp13438L438LctCctA11B.60.00091
ORF1ab/nsp13438L438HcTCcAT11C.170.055556
ORF1ab/nsp13438L438PcTccCc11C.350.000774
ORF1ab/nsp13438L438LctCctT11C.360.000911
ORF1ab/nsp13438L438ICtcAtc11D.20.000075
ORF1ab/nsp13438L438LctCctT11L.30.003546
ORF1ab/nsp13438L438ICtcAtc11P.10.000016
ORF1ab/nsp13438L438LctCctT11P.1.100.000269
ORF1ab/nsp13438L438ICtcAtc11P.1.170.000162
ORF1ab/nsp13438L438ICtcAtc11P.20.000187
ORF1ab/nsp13438L438LctCctT11P.30.001595
ORF1ab/nsp13438L438LctCctT11Q.40.000455
ORF1ab/nsp13438L438delCTC---11U.30.003861