CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 437

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13437F437FF5761FsynttCttT374374117545-17547
ORF1ab/nsp13437F437LF5761LnonsynTtcCtc39250.64102617545-17547
ORF1ab/nsp13437F437LF5761LnonsynttCttA39120.30769217545-17547
ORF1ab/nsp13437F437LF5761LnonsynttCttG3910.02564117545-17547
ORF1ab/nsp13437F437LF5761LnonsynTtCCtG3910.02564117545-17547
ORF1ab/nsp13437F437delF5761deldelTTC---2424117545-17547
ORF1ab/nsp13437F437VF5761VnonsynTtcGtc1616117545-17547
ORF1ab/nsp13437F437SF5761SnonsyntTctCc66117545-17547
ORF1ab/nsp13437F437YF5761YnonsyntTctAc44117545-17547
ORF1ab/nsp13437F437NF5761NnonsynTTcAAc22117545-17547
ORF1ab/nsp13437F437KF5761KnonsynTTCAAA22117545-17547
ORF1ab/nsp13437F437PF5761PnonsynTTcCCc22117545-17547
ORF1ab/nsp13437F437HF5761HnonsynTTcCAc22117545-17547
ORF1ab/nsp13437F437del1F5761del1delttCtt-22117545-17547
ORF1ab/nsp13437F437MF5761MnonsynTtCAtG11117545-17547
ORF1ab/nsp13437F437IF5761InonsynTtcAtc11117545-17547

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13437F437FttCttT374374All0.000072
ORF1ab/nsp13437F437FttCttT8989B.1.177.600.019441
ORF1ab/nsp13437F437FttCttT4444B.1.1.3430.916667
ORF1ab/nsp13437F437LTtcCtc2539All0.000005
ORF1ab/nsp13437F437LttCttA1239All0.000002
ORF1ab/nsp13437F437LTtCCtG139All0
ORF1ab/nsp13437F437LttCttG139All0
ORF1ab/nsp13437F437FttCttT3737AY.30.000368
ORF1ab/nsp13437F437FttCttT3232B.1.1.70.000029
ORF1ab/nsp13437F437delTTC---2424All0.000005
ORF1ab/nsp13437F437FttCttT2121B.1.5800.085366
ORF1ab/nsp13437F437VTtcGtc1616All0.000003
ORF1ab/nsp13437F437LTtcCtc1116B.10.000101
ORF1ab/nsp13437F437LttCttA516B.10.000046
ORF1ab/nsp13437F437FttCttT1616B.1.617.20.00006
ORF1ab/nsp13437F437FttCttT1414AY.40.000022
ORF1ab/nsp13437F437FttCttT1212AY.440.000073
ORF1ab/nsp13437F437delTTC---1212B.1.1.70.000011
ORF1ab/nsp13437F437FttCttT1010P.10.000158
ORF1ab/nsp13437F437StTctCc66All0.000001
ORF1ab/nsp13437F437FttCttT66B.10.000055
ORF1ab/nsp13437F437LTtcCtc56B.1.1.70.000004
ORF1ab/nsp13437F437LttCttA16B.1.1.70.000001
ORF1ab/nsp13437F437FttCttT55AY.110.006693
ORF1ab/nsp13437F437FttCttT55AY.470.000156
ORF1ab/nsp13437F437FttCttT55AY.690.000933
ORF1ab/nsp13437F437FttCttT55B.1.10.000091
ORF1ab/nsp13437F437YtTctAc44All0.000001
ORF1ab/nsp13437F437FttCttT44AY.250.000024
ORF1ab/nsp13437F437FttCttT44B.1.1.1890.006051
ORF1ab/nsp13437F437FttCttT44B.1.1770.000053
ORF1ab/nsp13437F437FttCttT33AY.140.000264
ORF1ab/nsp13437F437FttCttT33AY.430.000013
ORF1ab/nsp13437F437LTtcCtc33B.1.1770.00004
ORF1ab/nsp13437F437FttCttT33B.1.36.170.001482
ORF1ab/nsp13437F437HTTcCAc220.111111
ORF1ab/nsp13437F437PTTcCCc220.111111
ORF1ab/nsp13437F437YtTctAc220.111111
ORF1ab/nsp13437F437KTTCAAA220.111111
ORF1ab/nsp13437F437NTTcAAc220.111111
ORF1ab/nsp13437F437KTTCAAA22All0
ORF1ab/nsp13437F437HTTcCAc22All0
ORF1ab/nsp13437F437PTTcCCc22All0
ORF1ab/nsp13437F437del1ttCtt-22All0
ORF1ab/nsp13437F437NTTcAAc22All0
ORF1ab/nsp13437F437FttCttT22AY.1020.000053
ORF1ab/nsp13437F437FttCttT22AY.260.000057
ORF1ab/nsp13437F437FttCttT22AY.340.000194
ORF1ab/nsp13437F437delTTC---22AY.4.50.000215
ORF1ab/nsp13437F437FttCttT22AY.46.50.000397
ORF1ab/nsp13437F437FttCttT22AY.50.000041
ORF1ab/nsp13437F437FttCttT22AY.60.000082
ORF1ab/nsp13437F437VTtcGtc22AY.610.00021
ORF1ab/nsp13437F437FttCttT22AY.90.000135
ORF1ab/nsp13437F437FttCttT22B.1.1.250.001137
ORF1ab/nsp13437F437VTtcGtc22B.1.1.390.001019
ORF1ab/nsp13437F437LttCttA12B.1.1570.002985
ORF1ab/nsp13437F437LTtcCtc12B.1.1570.002985
ORF1ab/nsp13437F437VTtcGtc22B.1.1770.000026
ORF1ab/nsp13437F437VTtcGtc22B.1.177.230.006472
ORF1ab/nsp13437F437FttCttT22B.1.20.000018
ORF1ab/nsp13437F437LTtcCtc22B.1.3950.014085
ORF1ab/nsp13437F437FttCttT22B.1.6210.000177
ORF1ab/nsp13437F437FttCttT22R.10.00018
ORF1ab/nsp13437F437LttCttA11A0.000387
ORF1ab/nsp13437F437del1ttCtt-11A0.000387
ORF1ab/nsp13437F437delTTC---11AD.20.000219
ORF1ab/nsp13437F437MTtCAtG11All0
ORF1ab/nsp13437F437ITtcAtc11All0
ORF1ab/nsp13437F437FttCttT11AY.1000.000046
ORF1ab/nsp13437F437LttCttA11AY.1030.000006
ORF1ab/nsp13437F437FttCttT11AY.1140.000231
ORF1ab/nsp13437F437FttCttT11AY.116.10.000311
ORF1ab/nsp13437F437FttCttT11AY.1180.000063
ORF1ab/nsp13437F437FttCttT11AY.1190.000035
ORF1ab/nsp13437F437FttCttT11AY.120.10.000321
ORF1ab/nsp13437F437FttCttT11AY.200.000039
ORF1ab/nsp13437F437StTctCc11AY.250.000006
ORF1ab/nsp13437F437FttCttT11AY.290.000016
ORF1ab/nsp13437F437FttCttT11AY.29.10.000221
ORF1ab/nsp13437F437StTctCc11AY.30.00001
ORF1ab/nsp13437F437FttCttT11AY.360.000148
ORF1ab/nsp13437F437FttCttT11AY.390.000025
ORF1ab/nsp13437F437FttCttT11AY.4.20.000022
ORF1ab/nsp13437F437FttCttT11AY.420.00004
ORF1ab/nsp13437F437LttCttA11AY.430.000004
ORF1ab/nsp13437F437LttCttA11AY.440.000006
ORF1ab/nsp13437F437FttCttT11AY.450.000122
ORF1ab/nsp13437F437FttCttT11AY.590.00053
ORF1ab/nsp13437F437FttCttT11AY.610.000105
ORF1ab/nsp13437F437delTTC---11AY.670.000464
ORF1ab/nsp13437F437LTtcCtc11AY.690.000187
ORF1ab/nsp13437F437delTTC---11AY.99.10.001553
ORF1ab/nsp13437F437FttCttT11AZ.50.003509
ORF1ab/nsp13437F437FttCttT11B0.000128
ORF1ab/nsp13437F437VTtcGtc11B.10.000009
ORF1ab/nsp13437F437delTTC---11B.10.000009
ORF1ab/nsp13437F437StTctCc11B.1.10.000018
ORF1ab/nsp13437F437MTtCAtG11B.1.10.000018
ORF1ab/nsp13437F437LTtCCtG11B.1.10.000018
ORF1ab/nsp13437F437ITtcAtc11B.1.10.000018
ORF1ab/nsp13437F437VTtcGtc11B.1.10.000018
ORF1ab/nsp13437F437StTctCc11B.1.1.1250.010204
ORF1ab/nsp13437F437VTtcGtc11B.1.1.1440.028571
ORF1ab/nsp13437F437FttCttT11B.1.1.2160.00089
ORF1ab/nsp13437F437VTtcGtc11B.1.1.2690.001353
ORF1ab/nsp13437F437FttCttT11B.1.1.3160.000925
ORF1ab/nsp13437F437LttCttA11B.1.1600.000031
ORF1ab/nsp13437F437VTtcGtc11B.1.1600.000031
ORF1ab/nsp13437F437del1ttCtt-11B.1.1770.000013
ORF1ab/nsp13437F437StTctCc11B.1.1770.000013
ORF1ab/nsp13437F437VTtcGtc11B.1.177.440.000519
ORF1ab/nsp13437F437FttCttT11B.1.177.790.002342
ORF1ab/nsp13437F437delTTC---11B.1.1790.003759
ORF1ab/nsp13437F437StTctCc11B.1.20.000009
ORF1ab/nsp13437F437LTtcCtc11B.1.2060.000816
ORF1ab/nsp13437F437FttCttT11B.1.2340.000132
ORF1ab/nsp13437F437delTTC---11B.1.2580.000067
ORF1ab/nsp13437F437VTtcGtc11B.1.2580.000067
ORF1ab/nsp13437F437FttCttT11B.1.3510.00003
ORF1ab/nsp13437F437FttCttT11B.1.36.240.006173
ORF1ab/nsp13437F437delTTC---11B.1.4150.014286
ORF1ab/nsp13437F437VTtcGtc11B.1.416.10.001563
ORF1ab/nsp13437F437FttCttT11B.1.4290.000024
ORF1ab/nsp13437F437YtTctAc11B.1.5260.000024
ORF1ab/nsp13437F437FttCttT11B.1.5960.000087
ORF1ab/nsp13437F437FttCttT11B.1.617.10.000129
ORF1ab/nsp13437F437LTtcCtc11B.1.617.20.000004
ORF1ab/nsp13437F437YtTctAc11B.1.617.20.000004
ORF1ab/nsp13437F437delTTC---11B.1.617.20.000004
ORF1ab/nsp13437F437delTTC---11B.1.6300.005236
ORF1ab/nsp13437F437LttCttG11C.170.055556
ORF1ab/nsp13437F437FttCttT11C.370.000116
ORF1ab/nsp13437F437FttCttT11P.1.140.000048
ORF1ab/nsp13437F437FttCttT11P.30.001595
ORF1ab/nsp13437F437delTTC---11U.30.003861