CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 422 | F422F | F5746F | syn | ttC | ttT | 8550 | 8550 | 1 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422del | F5746del | del | TTC | --- | 26 | 26 | 1 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422L | F5746L | nonsyn | Ttc | Ctc | 23 | 12 | 0.521739 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422L | F5746L | nonsyn | ttC | ttA | 23 | 9 | 0.391304 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422L | F5746L | nonsyn | TtC | CtA | 23 | 1 | 0.0434783 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422L | F5746L | nonsyn | TtC | CtT | 23 | 1 | 0.0434783 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422S | F5746S | nonsyn | tTc | tCc | 13 | 13 | 1 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422V | F5746V | nonsyn | Ttc | Gtc | 8 | 4 | 0.5 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422V | F5746V | nonsyn | TtC | GtA | 8 | 4 | 0.5 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422Y | F5746Y | nonsyn | tTc | tAc | 4 | 4 | 1 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422del1 | F5746del1 | del | Ttc | -tc | 3 | 2 | 0.666667 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422del1 | F5746del1 | del | ttC | tt- | 3 | 1 | 0.333333 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422R | F5746R | nonsyn | TTC | CGT | 2 | 2 | 1 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422C | F5746C | nonsyn | tTc | tGc | 2 | 1 | 0.5 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422C | F5746C | nonsyn | tTC | tGT | 2 | 1 | 0.5 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422H | F5746H | nonsyn | TTc | CAc | 1 | 1 | 1 | 17500-17502 |
ORF1ab/nsp13 | 422 | F422I | F5746I | nonsyn | Ttc | Atc | 1 | 1 | 1 | 17500-17502 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 8550 | 8550 | All | 0.001635 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2070 | 2070 | B.1.1.7 | 0.001853 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1997 | 1997 | B.1.1.214 | 0.110748 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 377 | 377 | AY.44 | 0.002295 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 310 | 310 | AY.4 | 0.000482 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 279 | 279 | B.1.349 | 0.199428 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 200 | 200 | AY.117 | 0.016903 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 175 | 175 | B.1.2 | 0.001541 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 173 | 173 | B.1.567 | 0.576667 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 170 | 170 | AY.103 | 0.001056 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 155 | 155 | B.1.617.2 | 0.000584 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 142 | 142 | B.1.1 | 0.002576 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 118 | 118 | R.1 | 0.010621 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 113 | 113 | B.1.620 | 0.106906 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 110 | 110 | AY.4.2 | 0.002386 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 109 | 109 | AY.43 | 0.000483 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 98 | 98 | B.1.637 | 0.007161 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 95 | 95 | B.1.177 | 0.001251 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 84 | 84 | AY.25 | 0.000505 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 82 | 82 | AZ.2 | 0.067323 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 82 | 82 | P.1 | 0.001292 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 71 | 71 | B.1 | 0.00065 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 66 | 66 | B.1.429 | 0.001553 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 53 | 53 | AY.33 | 0.003539 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 51 | 51 | C.16 | 0.054083 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 44 | 44 | AY.47 | 0.001369 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 43 | 43 | B.1.243 | 0.002992 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 42 | 42 | AY.3 | 0.000418 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 41 | 41 | B.1.177.21 | 0.003135 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 37 | 37 | C.37 | 0.004294 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 34 | 34 | AY.20 | 0.001321 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 34 | 34 | AY.39 | 0.00084 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 34 | 34 | B.1.596 | 0.002963 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 30 | 30 | AY.5 | 0.000619 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 27 | 27 | B.1.525 | 0.003055 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 26 | 26 | All | 0.000005 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 26 | 26 | AY.102 | 0.000689 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 25 | 25 | B.1.1.28 | 0.007781 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 12 | 23 | All | 0.000002 |
ORF1ab/nsp13 | 422 | F422L | ttC | ttA | 9 | 23 | All | 0.000002 |
ORF1ab/nsp13 | 422 | F422L | TtC | CtA | 1 | 23 | All | 0 |
ORF1ab/nsp13 | 422 | F422L | TtC | CtT | 1 | 23 | All | 0 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 23 | 23 | P.1.12 | 0.011133 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 22 | 22 | B.1.1.519 | 0.000874 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 22 | 22 | B.1.160 | 0.000686 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 21 | 21 | AY.29 | 0.000331 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 20 | 20 | AY.75 | 0.00112 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 19 | 19 | AY.113 | 0.002705 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 18 | 18 | AY.4.5 | 0.001935 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 18 | 18 | B.1.177.7 | 0.002967 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 16 | 16 | AY.5.2 | 0.039409 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 16 | 16 | B.1.621 | 0.001416 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 16 | 16 | D.2 | 0.001201 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 15 | 15 | AY.54 | 0.00143 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 13 | 13 | All | 0.000002 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 13 | 13 | AY.46.5 | 0.002579 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 12 | 12 | AY.106 | 0.004019 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 12 | 12 | AY.34 | 0.001164 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 11 | 11 | AY.16 | 0.004176 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 11 | 11 | B.1.1.274 | 0.055556 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 11 | 11 | B.1.177.42 | 0.009839 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 11 | 11 | B.1.237 | 0.054726 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 11 | 11 | C.36 | 0.010018 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 10 | 10 | AY.86 | 0.008299 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 10 | 10 | B.1.177.44 | 0.005189 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 9 | 9 | B.1.177.77 | 0.006536 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp13 | 422 | F422V | TtC | GtA | 4 | 8 | All | 0.000001 |
ORF1ab/nsp13 | 422 | F422V | Ttc | Gtc | 4 | 8 | All | 0.000001 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 8 | 8 | B.1.1.1 | 0.002614 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 8 | 8 | B.1.595 | 0.002088 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 7 | 7 | AY.29.1 | 0.001544 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 7 | 7 | B.1.1.304 | 0.019663 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 7 | 7 | B.1.1.324 | 0.368421 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | AY.116.1 | 0.001869 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | B.1.1.381 | 0.24 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp13 | 422 | F422L | ttC | ttA | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | B.1.1.44 | 0.012048 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | B.1.1.67 | 0.022831 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | B.1.177.6 | 0.004883 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | B.1.438.3 | 0.384615 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | B.1.497 | 0.001574 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | P.1.1 | 0.001588 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 5 | 5 | S.1 | 0.024752 |
ORF1ab/nsp13 | 422 | F422Y | tTc | tAc | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 422 | F422Y | tTc | tAc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | B.1.1.198 | 0.005874 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | B.1.221.3 | 0.003333 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | B.1.416 | 0.005076 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp13 | 422 | F422del1 | Ttc | -tc | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 422 | F422del1 | ttC | tt- | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp13 | 422 | F422V | Ttc | Gtc | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp13 | 422 | F422V | TtC | GtA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | B.1.1.322 | 0.026316 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 422 | F422V | Ttc | Gtc | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 422 | F422V | TtC | GtA | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | B.1.1.83 | 0.00813 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | B.1.177.50 | 0.014085 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | B.1.177.56 | 0.002003 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | C.1 | 0.007177 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 3 | 3 | P.1.9 | 0.014423 |
ORF1ab/nsp13 | 422 | F422V | TtC | GtA | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 422 | F422R | TTC | CGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp13 | 422 | F422R | TTC | CGT | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 422 | F422C | tTC | tGT | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 422 | F422C | tTc | tGc | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.27 | 0.011299 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 2 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 422 | F422L | ttC | ttA | 1 | 2 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.1.508 | 0.051282 |
ORF1ab/nsp13 | 422 | F422L | ttC | ttA | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp13 | 422 | F422H | TTc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 422 | F422I | Ttc | Atc | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp13 | 422 | F422L | TtC | CtT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 422 | F422L | ttC | ttA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 422 | F422C | tTC | tGT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 422 | F422L | TtC | CtA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 422 | F422L | ttC | ttA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 422 | F422del1 | ttC | tt- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.147 | 0.090909 |
ORF1ab/nsp13 | 422 | F422del1 | Ttc | -tc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.410 | 0.037037 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp13 | 422 | F422C | tTc | tGc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp13 | 422 | F422del1 | Ttc | -tc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp13 | 422 | F422I | Ttc | Atc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 422 | F422H | TTc | CAc | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 422 | F422S | tTc | tCc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 422 | F422L | Ttc | Ctc | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.50 | 0.111111 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.6.1 | 0.026316 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 422 | F422L | ttC | ttA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 422 | F422F | ttC | ttT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 422 | F422del | TTC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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