CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 422

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp13	422	F422F	F5746F	syn	ttC	ttT	8550	8550	1	17500-17502
ORF1ab/nsp13	422	F422del	F5746del	del	TTC	---	26	26	1	17500-17502
ORF1ab/nsp13	422	F422L	F5746L	nonsyn	Ttc	Ctc	23	12	0.521739	17500-17502
ORF1ab/nsp13	422	F422L	F5746L	nonsyn	ttC	ttA	23	9	0.391304	17500-17502
ORF1ab/nsp13	422	F422L	F5746L	nonsyn	TtC	CtA	23	1	0.0434783	17500-17502
ORF1ab/nsp13	422	F422L	F5746L	nonsyn	TtC	CtT	23	1	0.0434783	17500-17502
ORF1ab/nsp13	422	F422S	F5746S	nonsyn	tTc	tCc	13	13	1	17500-17502
ORF1ab/nsp13	422	F422V	F5746V	nonsyn	Ttc	Gtc	8	4	0.5	17500-17502
ORF1ab/nsp13	422	F422V	F5746V	nonsyn	TtC	GtA	8	4	0.5	17500-17502
ORF1ab/nsp13	422	F422Y	F5746Y	nonsyn	tTc	tAc	4	4	1	17500-17502
ORF1ab/nsp13	422	F422del1	F5746del1	del	Ttc	-tc	3	2	0.666667	17500-17502
ORF1ab/nsp13	422	F422del1	F5746del1	del	ttC	tt-	3	1	0.333333	17500-17502
ORF1ab/nsp13	422	F422R	F5746R	nonsyn	TTC	CGT	2	2	1	17500-17502
ORF1ab/nsp13	422	F422C	F5746C	nonsyn	tTc	tGc	2	1	0.5	17500-17502
ORF1ab/nsp13	422	F422C	F5746C	nonsyn	tTC	tGT	2	1	0.5	17500-17502
ORF1ab/nsp13	422	F422H	F5746H	nonsyn	TTc	CAc	1	1	1	17500-17502
ORF1ab/nsp13	422	F422I	F5746I	nonsyn	Ttc	Atc	1	1	1	17500-17502

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp13	422	F422F	ttC	ttT	8550	8550	All	0.001635
ORF1ab/nsp13	422	F422F	ttC	ttT	2070	2070	B.1.1.7	0.001853
ORF1ab/nsp13	422	F422F	ttC	ttT	1997	1997	B.1.1.214	0.110748
ORF1ab/nsp13	422	F422F	ttC	ttT	377	377	AY.44	0.002295
ORF1ab/nsp13	422	F422F	ttC	ttT	310	310	AY.4	0.000482
ORF1ab/nsp13	422	F422F	ttC	ttT	279	279	B.1.349	0.199428
ORF1ab/nsp13	422	F422F	ttC	ttT	200	200	AY.117	0.016903
ORF1ab/nsp13	422	F422F	ttC	ttT	175	175	B.1.2	0.001541
ORF1ab/nsp13	422	F422F	ttC	ttT	173	173	B.1.567	0.576667
ORF1ab/nsp13	422	F422F	ttC	ttT	170	170	AY.103	0.001056
ORF1ab/nsp13	422	F422F	ttC	ttT	155	155	B.1.617.2	0.000584
ORF1ab/nsp13	422	F422F	ttC	ttT	142	142	B.1.1	0.002576
ORF1ab/nsp13	422	F422F	ttC	ttT	118	118	R.1	0.010621
ORF1ab/nsp13	422	F422F	ttC	ttT	113	113	B.1.620	0.106906
ORF1ab/nsp13	422	F422F	ttC	ttT	110	110	AY.4.2	0.002386
ORF1ab/nsp13	422	F422F	ttC	ttT	109	109	AY.43	0.000483
ORF1ab/nsp13	422	F422F	ttC	ttT	98	98	B.1.637	0.007161
ORF1ab/nsp13	422	F422F	ttC	ttT	95	95	B.1.177	0.001251
ORF1ab/nsp13	422	F422F	ttC	ttT	84	84	AY.25	0.000505
ORF1ab/nsp13	422	F422F	ttC	ttT	82	82	AZ.2	0.067323
ORF1ab/nsp13	422	F422F	ttC	ttT	82	82	P.1	0.001292
ORF1ab/nsp13	422	F422F	ttC	ttT	71	71	B.1	0.00065
ORF1ab/nsp13	422	F422F	ttC	ttT	66	66	B.1.429	0.001553
ORF1ab/nsp13	422	F422F	ttC	ttT	53	53	AY.33	0.003539
ORF1ab/nsp13	422	F422F	ttC	ttT	51	51	C.16	0.054083
ORF1ab/nsp13	422	F422F	ttC	ttT	44	44	AY.47	0.001369
ORF1ab/nsp13	422	F422F	ttC	ttT	43	43	B.1.243	0.002992
ORF1ab/nsp13	422	F422F	ttC	ttT	42	42	AY.3	0.000418
ORF1ab/nsp13	422	F422F	ttC	ttT	41	41	B.1.177.21	0.003135
ORF1ab/nsp13	422	F422F	ttC	ttT	37	37	C.37	0.004294
ORF1ab/nsp13	422	F422F	ttC	ttT	34	34	AY.20	0.001321
ORF1ab/nsp13	422	F422F	ttC	ttT	34	34	AY.39	0.00084
ORF1ab/nsp13	422	F422F	ttC	ttT	34	34	B.1.596	0.002963
ORF1ab/nsp13	422	F422F	ttC	ttT	30	30	AY.5	0.000619
ORF1ab/nsp13	422	F422F	ttC	ttT	27	27	B.1.525	0.003055
ORF1ab/nsp13	422	F422del	TTC	---	26	26	All	0.000005
ORF1ab/nsp13	422	F422F	ttC	ttT	26	26	AY.102	0.000689
ORF1ab/nsp13	422	F422F	ttC	ttT	25	25	B.1.1.28	0.007781
ORF1ab/nsp13	422	F422L	Ttc	Ctc	12	23	All	0.000002
ORF1ab/nsp13	422	F422L	ttC	ttA	9	23	All	0.000002
ORF1ab/nsp13	422	F422L	TtC	CtA	1	23	All	0
ORF1ab/nsp13	422	F422L	TtC	CtT	1	23	All	0
ORF1ab/nsp13	422	F422F	ttC	ttT	23	23	P.1.12	0.011133
ORF1ab/nsp13	422	F422F	ttC	ttT	22	22	B.1.1.519	0.000874
ORF1ab/nsp13	422	F422F	ttC	ttT	22	22	B.1.160	0.000686
ORF1ab/nsp13	422	F422F	ttC	ttT	21	21	AY.29	0.000331
ORF1ab/nsp13	422	F422F	ttC	ttT	20	20	AY.75	0.00112
ORF1ab/nsp13	422	F422F	ttC	ttT	19	19	AY.113	0.002705
ORF1ab/nsp13	422	F422F	ttC	ttT	19	19	AY.118	0.00119
ORF1ab/nsp13	422	F422F	ttC	ttT	18	18	AY.4.5	0.001935
ORF1ab/nsp13	422	F422F	ttC	ttT	18	18	B.1.177.7	0.002967
ORF1ab/nsp13	422	F422F	ttC	ttT	17	17	B.1.351	0.000505
ORF1ab/nsp13	422	F422F	ttC	ttT	16	16	AY.5.2	0.039409
ORF1ab/nsp13	422	F422F	ttC	ttT	16	16	B.1.621	0.001416
ORF1ab/nsp13	422	F422F	ttC	ttT	16	16	D.2	0.001201
ORF1ab/nsp13	422	F422F	ttC	ttT	15	15	AY.54	0.00143
ORF1ab/nsp13	422	F422F	ttC	ttT	15	15	AY.99.2	0.001382
ORF1ab/nsp13	422	F422S	tTc	tCc	13	13	All	0.000002
ORF1ab/nsp13	422	F422F	ttC	ttT	13	13	AY.46.5	0.002579
ORF1ab/nsp13	422	F422F	ttC	ttT	13	13	B.1.427	0.000656
ORF1ab/nsp13	422	F422F	ttC	ttT	12	12	AY.100	0.000552
ORF1ab/nsp13	422	F422F	ttC	ttT	12	12	AY.106	0.004019
ORF1ab/nsp13	422	F422F	ttC	ttT	12	12	AY.34	0.001164
ORF1ab/nsp13	422	F422F	ttC	ttT	12	12	B.1.526	0.000282
ORF1ab/nsp13	422	F422F	ttC	ttT	11	11	AY.16	0.004176
ORF1ab/nsp13	422	F422F	ttC	ttT	11	11	B.1.1.274	0.055556
ORF1ab/nsp13	422	F422F	ttC	ttT	11	11	B.1.177.42	0.009839
ORF1ab/nsp13	422	F422F	ttC	ttT	11	11	B.1.237	0.054726
ORF1ab/nsp13	422	F422F	ttC	ttT	11	11	C.36	0.010018
ORF1ab/nsp13	422	F422F	ttC	ttT	10	10	AY.86	0.008299
ORF1ab/nsp13	422	F422F	ttC	ttT	10	10	AY.98	0.00079
ORF1ab/nsp13	422	F422del	TTC	---	10	10	B.1.1.7	0.000009
ORF1ab/nsp13	422	F422F	ttC	ttT	10	10	B.1.177.44	0.005189
ORF1ab/nsp13	422	F422F	ttC	ttT	9	9	AY.121	0.001218
ORF1ab/nsp13	422	F422F	ttC	ttT	9	9	AY.26	0.000255
ORF1ab/nsp13	422	F422F	ttC	ttT	9	9	AY.46.6	0.00065
ORF1ab/nsp13	422	F422F	ttC	ttT	9	9	B.1.177.77	0.006536
ORF1ab/nsp13	422	F422F	ttC	ttT	9	9	B.1.240	0.00194
ORF1ab/nsp13	422	F422V	TtC	GtA	4	8	All	0.000001
ORF1ab/nsp13	422	F422V	Ttc	Gtc	4	8	All	0.000001
ORF1ab/nsp13	422	F422F	ttC	ttT	8	8	AY.119	0.000282
ORF1ab/nsp13	422	F422F	ttC	ttT	8	8	B.1.1.1	0.002614
ORF1ab/nsp13	422	F422F	ttC	ttT	8	8	B.1.1.222	0.001632
ORF1ab/nsp13	422	F422F	ttC	ttT	8	8	B.1.595	0.002088
ORF1ab/nsp13	422	F422F	ttC	ttT	7	7	AY.29.1	0.001544
ORF1ab/nsp13	422	F422F	ttC	ttT	7	7	AY.85	0.00299
ORF1ab/nsp13	422	F422F	ttC	ttT	7	7	AY.9	0.000473
ORF1ab/nsp13	422	F422F	ttC	ttT	7	7	B.1.1.304	0.019663
ORF1ab/nsp13	422	F422F	ttC	ttT	7	7	B.1.1.324	0.368421
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	AY.116.1	0.001869
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	AY.120	0.000223
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	AY.39.1	0.000238
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	AY.42	0.000241
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	AY.45	0.00073
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	AY.6	0.000247
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	AY.7.1	0.000676
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	B.1.1.25	0.003411
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	B.1.1.381	0.24
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	B.1.232	0.003224
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	B.1.234	0.000792
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	B.1.36.29	0.003104
ORF1ab/nsp13	422	F422F	ttC	ttT	6	6	P.2	0.00112
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	AY.74	0.000578
ORF1ab/nsp13	422	F422L	ttC	ttA	3	5	B.1	0.000027
ORF1ab/nsp13	422	F422L	Ttc	Ctc	2	5	B.1	0.000018
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	B.1.1.44	0.012048
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	B.1.1.67	0.022831
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	B.1.177.6	0.004883
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	B.1.177.86	0.000917
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	B.1.221	0.000355
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	B.1.438.3	0.384615
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	B.1.497	0.001574
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	P.1.1	0.001588
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	Q.8	0.000825
ORF1ab/nsp13	422	F422F	ttC	ttT	5	5	S.1	0.024752
ORF1ab/nsp13	422	F422Y	tTc	tAc	4	4		0.222222
ORF1ab/nsp13	422	F422Y	tTc	tAc	4	4	All	0.000001
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	AY.38	0.001997
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	AY.41	0.001176
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	AY.46	0.000416
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	AY.65	0.002132
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	AY.9.2	0.000147
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	B.1.1.198	0.005874
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	B.1.1.216	0.003562
ORF1ab/nsp13	422	F422S	tTc	tCc	4	4	B.1.2	0.000035
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	B.1.221.3	0.003333
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	B.1.258	0.000266
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	B.1.416	0.005076
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	B.1.609	0.001918
ORF1ab/nsp13	422	F422F	ttC	ttT	4	4	P.1.14	0.000191
ORF1ab/nsp13	422	F422del1	Ttc	-tc	2	3	All	0
ORF1ab/nsp13	422	F422del1	ttC	tt-	1	3	All	0
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	AY.27	0.000194
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	AY.35	0.000699
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	AY.64	0.001786
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	AY.92	0.000862
ORF1ab/nsp13	422	F422V	Ttc	Gtc	2	3	B.1	0.000018
ORF1ab/nsp13	422	F422V	TtC	GtA	1	3	B.1	0.000009
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	B.1.1.322	0.026316
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	B.1.1.448	0.006098
ORF1ab/nsp13	422	F422S	tTc	tCc	3	3	B.1.1.7	0.000003
ORF1ab/nsp13	422	F422V	Ttc	Gtc	2	3	B.1.1.7	0.000002
ORF1ab/nsp13	422	F422V	TtC	GtA	1	3	B.1.1.7	0.000001
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	B.1.1.83	0.00813
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	B.1.177.50	0.014085
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	B.1.177.56	0.002003
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	B.1.582	0.001472
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	B.4	0.006623
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	C.1	0.007177
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	P.1.15	0.000697
ORF1ab/nsp13	422	F422F	ttC	ttT	3	3	P.1.9	0.014423
ORF1ab/nsp13	422	F422V	TtC	GtA	2	2		0.111111
ORF1ab/nsp13	422	F422R	TTC	CGT	2	2		0.111111
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	A	0.000774
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	A.23.1	0.001408
ORF1ab/nsp13	422	F422R	TTC	CGT	2	2	All	0
ORF1ab/nsp13	422	F422C	tTC	tGT	1	2	All	0
ORF1ab/nsp13	422	F422C	tTc	tGc	1	2	All	0
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.14	0.000176
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.24	0.000862
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.32	0.001065
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.36	0.000296
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.37	0.000632
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.5.3	0.000675
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.55	0.001835
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.71	0.00095
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.98.1	0.000097
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	AY.99.1	0.003106
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.220	0.003717
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.243	0.008163
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.27	0.011299
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.284	0.000215
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.298	0.001724
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.312	0.003824
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.369	0.000892
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.372	0.001377
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.39	0.001019
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.524	0.041667
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.1.70	0.000682
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.139	0.001466
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.146	0.008475
ORF1ab/nsp13	422	F422L	Ttc	Ctc	2	2	B.1.177	0.000026
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.177.52	0.003515
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.206	0.001631
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	2	B.1.206	0.000816
ORF1ab/nsp13	422	F422L	ttC	ttA	1	2	B.1.206	0.000816
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.241	0.001623
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.258.17	0.000208
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.279	0.001027
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.36	0.000292
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.36.8	0.002
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.369	0.00057
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.408	0.00738
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.438.1	0.000215
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.1.508	0.051282
ORF1ab/nsp13	422	F422L	ttC	ttA	2	2	B.1.617.2	0.000008
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	B.6	0.00182
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	C.37.1	0.005236
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	P.1.7	0.000639
ORF1ab/nsp13	422	F422F	ttC	ttT	2	2	Q.1	0.000253
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	A.2.2	0.001689
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	A.2.4	0.003367
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	A.2.5	0.000499
ORF1ab/nsp13	422	F422del	TTC	---	1	1	AD.2	0.000219
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AL.1	0.012987
ORF1ab/nsp13	422	F422H	TTc	CAc	1	1	All	0
ORF1ab/nsp13	422	F422I	Ttc	Atc	1	1	All	0
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AU.3	0.00211
ORF1ab/nsp13	422	F422S	tTc	tCc	1	1	AY.103	0.000006
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.105	0.000643
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.107	0.000466
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.108	0.001103
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.12	0.000316
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.16.1	0.00047
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.21	0.001898
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.23	0.00007
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	1	AY.26	0.000028
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.28	0.00189
ORF1ab/nsp13	422	F422L	TtC	CtT	1	1	AY.3	0.00001
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.34.1	0.00051
ORF1ab/nsp13	422	F422del	TTC	---	1	1	AY.4	0.000002
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	1	AY.4	0.000002
ORF1ab/nsp13	422	F422S	tTc	tCc	1	1	AY.43	0.000004
ORF1ab/nsp13	422	F422L	ttC	ttA	1	1	AY.43	0.000004
ORF1ab/nsp13	422	F422del	TTC	---	1	1	AY.43	0.000004
ORF1ab/nsp13	422	F422C	tTC	tGT	1	1	AY.44	0.000006
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.5.4	0.000277
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.51	0.000909
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.56	0.001605
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.59	0.00053
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.61	0.000105
ORF1ab/nsp13	422	F422L	TtC	CtA	1	1	AY.67	0.000464
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.68	0.000274
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.70	0.000209
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	1	AY.75	0.000056
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.75.1	0.00018
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.9.1	0.000084
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.90	0.000684
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AY.95	0.000761
ORF1ab/nsp13	422	F422del	TTC	---	1	1	AY.99.1	0.001553
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	AZ.3	0.00152
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B	0.000128
ORF1ab/nsp13	422	F422S	tTc	tCc	1	1	B.1	0.000009
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1	0.000009
ORF1ab/nsp13	422	F422L	ttC	ttA	1	1	B.1.1	0.000018
ORF1ab/nsp13	422	F422del1	ttC	tt-	1	1	B.1.1	0.000018
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	1	B.1.1.1	0.000327
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.147	0.090909
ORF1ab/nsp13	422	F422del1	Ttc	-tc	1	1	B.1.1.222	0.000204
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.228	0.003049
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.263	0.001558
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.277	0.000759
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.286	0.002899
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.291	0.000742
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.301	0.001179
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.305	0.003861
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.318	0.000302
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.33	0.000421
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.348	0.000796
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.354	0.004386
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.368	0.003086
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.375	0.011905
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.376	0.005952
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.378	0.007299
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.409	0.002833
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.410	0.037037
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.417	0.002703
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.420	0.001006
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.434	0.000349
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.467	0.019231
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.486	0.001577
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.507	0.008696
ORF1ab/nsp13	422	F422C	tTc	tGc	1	1	B.1.1.519	0.00004
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.521	0.005348
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.1.526	0.003546
ORF1ab/nsp13	422	F422del1	Ttc	-tc	1	1	B.1.1.7	0.000001
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	1	B.1.1.7	0.000001
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.111	0.001175
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.157	0.002985
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.177.15	0.000631
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.177.19	0.001431
ORF1ab/nsp13	422	F422I	Ttc	Atc	1	1	B.1.177.33	0.001645
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.177.4	0.000211
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.177.51	0.004566
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.177.57	0.000281
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp13	422	F422S	tTc	tCc	1	1	B.1.177.7	0.000165
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.177.73	0.000566
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp13	422	F422S	tTc	tCc	1	1	B.1.177.86	0.000183
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.179	0.003759
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.182	0.007246
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.221.4	0.004167
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.235	0.002519
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.239	0.001221
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.258	0.000067
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.260	0.003344
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.311	0.000275
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.320	0.001245
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.346	0.001311
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	1	B.1.351	0.00003
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.351.3	0.000876
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.36.31	0.001751
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.36.36	0.000602
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.366	0.004878
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.367	0.000792
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.385	0.010638
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.391	0.001127
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.399	0.001934
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.415	0.014286
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.416.1	0.001563
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.428	0.00102
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.466.1	0.007194
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.466.2	0.000391
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.468	0.005714
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.470	0.001404
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.499	0.00105
ORF1ab/nsp13	422	F422H	TTc	CAc	1	1	B.1.515	0.014493
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.524	0.001406
ORF1ab/nsp13	422	F422S	tTc	tCc	1	1	B.1.525	0.000113
ORF1ab/nsp13	422	F422L	Ttc	Ctc	1	1	B.1.552	0.015152
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.564	0.000426
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.565	0.00081
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.568	0.001111
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.575	0.000303
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.577	0.000687
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.617.1	0.000129
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.619	0.000871
ORF1ab/nsp13	422	F422del	TTC	---	1	1	B.1.630	0.005236
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.634	0.003425
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.1.8	0.001972
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.3	0.000831
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.35	0.007812
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.50	0.111111
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.6.1	0.026316
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	B.6.6	0.000889
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	C.35	0.000774
ORF1ab/nsp13	422	F422L	ttC	ttA	1	1	D.2	0.000075
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	D.3	0.005917
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	N.5	0.001767
ORF1ab/nsp13	422	F422F	ttC	ttT	1	1	P.1.2	0.001156
ORF1ab/nsp13	422	F422del	TTC	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.