CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 420 & Codon = gaG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13420E420EE5744EsyngaAgaG1976419764117494-17496

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13420E420EgaAgaG1976419764All0.00378
ORF1ab/nsp13420E420EgaAgaG89408940B.1.617.20.033663
ORF1ab/nsp13420E420EgaAgaG41814181AY.350.974365
ORF1ab/nsp13420E420EgaAgaG28352835B.1.1.70.002538
ORF1ab/nsp13420E420EgaAgaG17541754AY.480.815814
ORF1ab/nsp13420E420EgaAgaG589589AY.16.10.276786
ORF1ab/nsp13420E420EgaAgaG208208AY.440.001266
ORF1ab/nsp13420E420EgaAgaG176176AY.130.028332
ORF1ab/nsp13420E420EgaAgaG128128AY.1080.141125
ORF1ab/nsp13420E420EgaAgaG111111AY.230.007742
ORF1ab/nsp13420E420EgaAgaG6262AY.920.017811
ORF1ab/nsp13420E420EgaAgaG5757AY.590.030191
ORF1ab/nsp13420E420EgaAgaG5454AY.540.005149
ORF1ab/nsp13420E420EgaAgaG4848AY.680.01314
ORF1ab/nsp13420E420EgaAgaG4545AY.980.003555
ORF1ab/nsp13420E420EgaAgaG4545B.1.177.590.725806
ORF1ab/nsp13420E420EgaAgaG4040AY.660.042781
ORF1ab/nsp13420E420EgaAgaG3737AY.190.042189
ORF1ab/nsp13420E420EgaAgaG3030AY.520.02443
ORF1ab/nsp13420E420EgaAgaG2828AY.370.00885
ORF1ab/nsp13420E420EgaAgaG2727B.10.000247
ORF1ab/nsp13420E420EgaAgaG2525AY.1000.00115
ORF1ab/nsp13420E420EgaAgaG2020AY.1030.000124
ORF1ab/nsp13420E420EgaAgaG2020AY.5.40.005534
ORF1ab/nsp13420E420EgaAgaG1818AY.1160.005162
ORF1ab/nsp13420E420EgaAgaG1818AY.430.00008
ORF1ab/nsp13420E420EgaAgaG1313AY.250.000078
ORF1ab/nsp13420E420EgaAgaG1212AY.470.000373
ORF1ab/nsp13420E420EgaAgaG1111AY.1180.000689
ORF1ab/nsp13420E420EgaAgaG1111AY.40.000017
ORF1ab/nsp13420E420EgaAgaG1111AY.620.004793
ORF1ab/nsp13420E420EgaAgaG1010AY.1210.001353
ORF1ab/nsp13420E420EgaAgaG99AY.240.003879
ORF1ab/nsp13420E420EgaAgaG99AY.550.008257
ORF1ab/nsp13420E420EgaAgaG88AY.750.000448
ORF1ab/nsp13420E420EgaAgaG88AY.770.009019
ORF1ab/nsp13420E420EgaAgaG88AY.9.20.000294
ORF1ab/nsp13420E420EgaAgaG77AY.870.005828
ORF1ab/nsp13420E420EgaAgaG77AY.98.10.000339
ORF1ab/nsp13420E420EgaAgaG66AY.30.00006
ORF1ab/nsp13420E420EgaAgaG66AY.640.003571
ORF1ab/nsp13420E420EgaAgaG55AY.560.008026
ORF1ab/nsp13420E420EgaAgaG55AY.610.000524
ORF1ab/nsp13420E420EgaAgaG44AY.1170.000338
ORF1ab/nsp13420E420EgaAgaG44AY.200.000155
ORF1ab/nsp13420E420EgaAgaG44AY.420.000161
ORF1ab/nsp13420E420EgaAgaG44AY.450.000487
ORF1ab/nsp13420E420EgaAgaG44AY.670.001857
ORF1ab/nsp13420E420EgaAgaG44AY.840.00175
ORF1ab/nsp13420E420EgaAgaG44AY.880.003537
ORF1ab/nsp13420E420EgaAgaG44B0.000511
ORF1ab/nsp13420E420EgaAgaG44B.1.1.5190.000159
ORF1ab/nsp13420E420EgaAgaG44B.1.1600.000125
ORF1ab/nsp13420E420EgaAgaG44B.1.1770.000053
ORF1ab/nsp13420E420EgaAgaG44B.1.617.10.000516
ORF1ab/nsp13420E420EgaAgaG44P.10.000063
ORF1ab/nsp13420E420EgaAgaG33A0.001161
ORF1ab/nsp13420E420EgaAgaG33AY.1060.001005
ORF1ab/nsp13420E420EgaAgaG33AY.220.006276
ORF1ab/nsp13420E420EgaAgaG33AY.530.000863
ORF1ab/nsp13420E420EgaAgaG33AY.710.001425
ORF1ab/nsp13420E420EgaAgaG33AY.780.004622
ORF1ab/nsp13420E420EgaAgaG33AY.930.000819
ORF1ab/nsp13420E420EgaAgaG33AY.950.002283
ORF1ab/nsp13420E420EgaAgaG33B.1.221.40.0125
ORF1ab/nsp13420E420EgaAgaG22AY.100.00106
ORF1ab/nsp13420E420EgaAgaG22AY.1010.000981
ORF1ab/nsp13420E420EgaAgaG22AY.110.002677
ORF1ab/nsp13420E420EgaAgaG22AY.120.000632
ORF1ab/nsp13420E420EgaAgaG22AY.60.000082
ORF1ab/nsp13420E420EgaAgaG22AY.700.000417
ORF1ab/nsp13420E420EgaAgaG22B.1.10.000036
ORF1ab/nsp13420E420EgaAgaG22B.1.6370.000146
ORF1ab/nsp13420E420EgaAgaG11AU.10.001266
ORF1ab/nsp13420E420EgaAgaG11AY.1020.000027
ORF1ab/nsp13420E420EgaAgaG11AY.270.000065
ORF1ab/nsp13420E420EgaAgaG11AY.280.00189
ORF1ab/nsp13420E420EgaAgaG11AY.290.000016
ORF1ab/nsp13420E420EgaAgaG11AY.300.000396
ORF1ab/nsp13420E420EgaAgaG11AY.320.000532
ORF1ab/nsp13420E420EgaAgaG11AY.330.000067
ORF1ab/nsp13420E420EgaAgaG11AY.380.000499
ORF1ab/nsp13420E420EgaAgaG11AY.390.000025
ORF1ab/nsp13420E420EgaAgaG11AY.4.20.000022
ORF1ab/nsp13420E420EgaAgaG11AY.410.000294
ORF1ab/nsp13420E420EgaAgaG11AY.5.30.000337
ORF1ab/nsp13420E420EgaAgaG11AY.510.000909
ORF1ab/nsp13420E420EgaAgaG11AY.580.000907
ORF1ab/nsp13420E420EgaAgaG11AY.75.10.00018
ORF1ab/nsp13420E420EgaAgaG11AY.820.001357
ORF1ab/nsp13420E420EgaAgaG11AY.850.000427
ORF1ab/nsp13420E420EgaAgaG11AY.910.00073
ORF1ab/nsp13420E420EgaAgaG11AY.960.002075
ORF1ab/nsp13420E420EgaAgaG11AY.99.20.000092
ORF1ab/nsp13420E420EgaAgaG11B.1.1.2160.00089
ORF1ab/nsp13420E420EgaAgaG11B.1.177.210.000076
ORF1ab/nsp13420E420EgaAgaG11B.1.20.000009
ORF1ab/nsp13420E420EgaAgaG11B.1.5240.001406
ORF1ab/nsp13420E420EgaAgaG11B.1.6090.000479
ORF1ab/nsp13420E420EgaAgaG11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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