CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 419 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13419P419SP5743SnonsynCcaTca1482014820117491-17493

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13419P419SCcaTca1482014820All0.002835
ORF1ab/nsp13419P419SCcaTca1107511075B.1.6210.980349
ORF1ab/nsp13419P419SCcaTca19671967B.1.621.10.994942
ORF1ab/nsp13419P419SCcaTca469469B.1.1.70.00042
ORF1ab/nsp13419P419SCcaTca129129AY.440.000785
ORF1ab/nsp13419P419SCcaTca121121B.10.001108
ORF1ab/nsp13419P419SCcaTca100100B.1.1600.003119
ORF1ab/nsp13419P419SCcaTca9797B.1.1.1570.088584
ORF1ab/nsp13419P419SCcaTca7878B.1.2580.005191
ORF1ab/nsp13419P419SCcaTca5151AY.50.001053
ORF1ab/nsp13419P419SCcaTca4040AY.40.000062
ORF1ab/nsp13419P419SCcaTca4040B.1.617.20.000151
ORF1ab/nsp13419P419SCcaTca3636B.1.1770.000474
ORF1ab/nsp13419P419SCcaTca3434AY.1030.000211
ORF1ab/nsp13419P419SCcaTca3434AY.30.000338
ORF1ab/nsp13419P419SCcaTca3232B.1.1.3791
ORF1ab/nsp13419P419SCcaTca2222AY.470.000684
ORF1ab/nsp13419P419SCcaTca2222P.10.000347
ORF1ab/nsp13419P419SCcaTca2121B.1.20.000185
ORF1ab/nsp13419P419SCcaTca2020B.1.10.000363
ORF1ab/nsp13419P419SCcaTca1818AY.250.000108
ORF1ab/nsp13419P419SCcaTca1818AY.9.20.000661
ORF1ab/nsp13419P419SCcaTca1818B.1.617.10.002321
ORF1ab/nsp13419P419SCcaTca1515AY.430.000066
ORF1ab/nsp13419P419SCcaTca1414B.1.4290.000329
ORF1ab/nsp13419P419SCcaTca1313B.1.1.5190.000516
ORF1ab/nsp13419P419SCcaTca1111AY.420.000443
ORF1ab/nsp13419P419SCcaTca1010AY.1170.000845
ORF1ab/nsp13419P419SCcaTca1010AY.920.002873
ORF1ab/nsp13419P419SCcaTca1010B.1.5410.044248
ORF1ab/nsp13419P419SCcaTca99AY.200.00035
ORF1ab/nsp13419P419SCcaTca99B.1.1.500.00611
ORF1ab/nsp13419P419SCcaTca99P.20.00168
ORF1ab/nsp13419P419SCcaTca77AY.290.00011
ORF1ab/nsp13419P419SCcaTca77AY.390.000173
ORF1ab/nsp13419P419SCcaTca77B0.000895
ORF1ab/nsp13419P419SCcaTca77B.1.3510.000208
ORF1ab/nsp13419P419SCcaTca66AY.1020.000159
ORF1ab/nsp13419P419SCcaTca66B.1.4970.001889
ORF1ab/nsp13419P419SCcaTca66B.1.5960.000523
ORF1ab/nsp13419P419SCcaTca66B.1.6230.003219
ORF1ab/nsp13419P419SCcaTca66D.20.00045
ORF1ab/nsp13419P419SCcaTca55B.1.177.730.002831
ORF1ab/nsp13419P419SCcaTca55P.1.140.000239
ORF1ab/nsp13419P419SCcaTca44AY.140.000352
ORF1ab/nsp13419P419SCcaTca44AY.260.000113
ORF1ab/nsp13419P419SCcaTca44AY.690.000747
ORF1ab/nsp13419P419SCcaTca44B.1.177.350.002764
ORF1ab/nsp13419P419SCcaTca44B.1.4690.01444
ORF1ab/nsp13419P419SCcaTca44B.1.5330.038462
ORF1ab/nsp13419P419SCcaTca44P.1.150.000929
ORF1ab/nsp13419P419SCcaTca33AY.1000.000138
ORF1ab/nsp13419P419SCcaTca33AY.1110.000549
ORF1ab/nsp13419P419SCcaTca33AY.1180.000188
ORF1ab/nsp13419P419SCcaTca33AY.39.10.000119
ORF1ab/nsp13419P419SCcaTca33AY.610.000314
ORF1ab/nsp13419P419SCcaTca33B.1.1.2140.000166
ORF1ab/nsp13419P419SCcaTca33B.1.1.3970.006757
ORF1ab/nsp13419P419SCcaTca33B.1.177.460.002755
ORF1ab/nsp13419P419SCcaTca33B.1.2210.000213
ORF1ab/nsp13419P419SCcaTca33B.1.3200.003736
ORF1ab/nsp13419P419SCcaTca33B.1.3620.004622
ORF1ab/nsp13419P419SCcaTca33B.1.4270.000151
ORF1ab/nsp13419P419SCcaTca33B.1.4800.007463
ORF1ab/nsp13419P419SCcaTca33B.1.5820.001472
ORF1ab/nsp13419P419SCcaTca33B.1.6260.017143
ORF1ab/nsp13419P419SCcaTca33C.180.007772
ORF1ab/nsp13419P419SCcaTca22A.20.001324
ORF1ab/nsp13419P419SCcaTca22AY.1060.00067
ORF1ab/nsp13419P419SCcaTca22AY.1090.001479
ORF1ab/nsp13419P419SCcaTca22AY.1190.000071
ORF1ab/nsp13419P419SCcaTca22AY.1210.000271
ORF1ab/nsp13419P419SCcaTca22AY.23.10.000835
ORF1ab/nsp13419P419SCcaTca22AY.3.10.000171
ORF1ab/nsp13419P419SCcaTca22AY.330.000134
ORF1ab/nsp13419P419SCcaTca22AY.4.20.000043
ORF1ab/nsp13419P419SCcaTca22AY.4.40.000818
ORF1ab/nsp13419P419SCcaTca22AY.540.000191
ORF1ab/nsp13419P419SCcaTca22AY.90.000135
ORF1ab/nsp13419P419SCcaTca22AY.990.002099
ORF1ab/nsp13419P419SCcaTca22B.1.1.700.000682
ORF1ab/nsp13419P419SCcaTca22B.1.177.120.000303
ORF1ab/nsp13419P419SCcaTca22B.1.258.170.000208
ORF1ab/nsp13419P419SCcaTca22B.1.3150.012121
ORF1ab/nsp13419P419SCcaTca22B.1.36.80.002
ORF1ab/nsp13419P419SCcaTca22B.1.3610.002577
ORF1ab/nsp13419P419SCcaTca22B.1.3670.001585
ORF1ab/nsp13419P419SCcaTca22B.1.3750.001639
ORF1ab/nsp13419P419SCcaTca22B.1.3990.003868
ORF1ab/nsp13419P419SCcaTca22B.1.5750.000607
ORF1ab/nsp13419P419SCcaTca22C.370.000232
ORF1ab/nsp13419P419SCcaTca22R.10.00018
ORF1ab/nsp13419P419SCcaTca11A0.000387
ORF1ab/nsp13419P419SCcaTca11A.2.50.000499
ORF1ab/nsp13419P419SCcaTca11AY.10.000396
ORF1ab/nsp13419P419SCcaTca11AY.1080.001103
ORF1ab/nsp13419P419SCcaTca11AY.1100.000113
ORF1ab/nsp13419P419SCcaTca11AY.116.10.000311
ORF1ab/nsp13419P419SCcaTca11AY.120.000316
ORF1ab/nsp13419P419SCcaTca11AY.1200.000037
ORF1ab/nsp13419P419SCcaTca11AY.160.00038
ORF1ab/nsp13419P419SCcaTca11AY.16.10.00047
ORF1ab/nsp13419P419SCcaTca11AY.190.00114
ORF1ab/nsp13419P419SCcaTca11AY.210.001898
ORF1ab/nsp13419P419SCcaTca11AY.230.00007
ORF1ab/nsp13419P419SCcaTca11AY.340.000097
ORF1ab/nsp13419P419SCcaTca11AY.4.50.000107
ORF1ab/nsp13419P419SCcaTca11AY.450.000122
ORF1ab/nsp13419P419SCcaTca11AY.46.10.001027
ORF1ab/nsp13419P419SCcaTca11AY.5.30.000337
ORF1ab/nsp13419P419SCcaTca11AY.520.000814
ORF1ab/nsp13419P419SCcaTca11AY.530.000288
ORF1ab/nsp13419P419SCcaTca11AY.580.000907
ORF1ab/nsp13419P419SCcaTca11AY.60.000041
ORF1ab/nsp13419P419SCcaTca11AY.750.000056
ORF1ab/nsp13419P419SCcaTca11AY.75.10.00018
ORF1ab/nsp13419P419SCcaTca11AY.840.000437
ORF1ab/nsp13419P419SCcaTca11AY.890.004902
ORF1ab/nsp13419P419SCcaTca11AY.910.00073
ORF1ab/nsp13419P419SCcaTca11AY.98.10.000048
ORF1ab/nsp13419P419SCcaTca11AZ.60.008403
ORF1ab/nsp13419P419SCcaTca11B.1.1.1410.002012
ORF1ab/nsp13419P419SCcaTca11B.1.1.1630.007634
ORF1ab/nsp13419P419SCcaTca11B.1.1.2360.006897
ORF1ab/nsp13419P419SCcaTca11B.1.1.2370.005405
ORF1ab/nsp13419P419SCcaTca11B.1.1.3170.000412
ORF1ab/nsp13419P419SCcaTca11B.1.1.3370.003597
ORF1ab/nsp13419P419SCcaTca11B.1.1.3540.004386
ORF1ab/nsp13419P419SCcaTca11B.1.1.370.000193
ORF1ab/nsp13419P419SCcaTca11B.1.1.4320.001266
ORF1ab/nsp13419P419SCcaTca11B.1.1.740.00431
ORF1ab/nsp13419P419SCcaTca11B.1.1.990.02381
ORF1ab/nsp13419P419SCcaTca11B.1.1270.002198
ORF1ab/nsp13419P419SCcaTca11B.1.130.002375
ORF1ab/nsp13419P419SCcaTca11B.1.160.110.005714
ORF1ab/nsp13419P419SCcaTca11B.1.160.330.004425
ORF1ab/nsp13419P419SCcaTca11B.1.177.150.000631
ORF1ab/nsp13419P419SCcaTca11B.1.177.180.00116
ORF1ab/nsp13419P419SCcaTca11B.1.177.200.001517
ORF1ab/nsp13419P419SCcaTca11B.1.177.230.003236
ORF1ab/nsp13419P419SCcaTca11B.1.177.580.001332
ORF1ab/nsp13419P419SCcaTca11B.1.177.70.000165
ORF1ab/nsp13419P419SCcaTca11B.1.2220.001692
ORF1ab/nsp13419P419SCcaTca11B.1.2340.000132
ORF1ab/nsp13419P419SCcaTca11B.1.2430.00007
ORF1ab/nsp13419P419SCcaTca11B.1.351.30.000876
ORF1ab/nsp13419P419SCcaTca11B.1.360.000146
ORF1ab/nsp13419P419SCcaTca11B.1.36.180.00042
ORF1ab/nsp13419P419SCcaTca11B.1.3690.000285
ORF1ab/nsp13419P419SCcaTca11B.1.3910.001127
ORF1ab/nsp13419P419SCcaTca11B.1.438.10.000107
ORF1ab/nsp13419P419SCcaTca11B.1.5250.000113
ORF1ab/nsp13419P419SCcaTca11B.1.5260.000024
ORF1ab/nsp13419P419SCcaTca11B.1.5550.022222
ORF1ab/nsp13419P419SCcaTca11B.1.5610.000397
ORF1ab/nsp13419P419SCcaTca11B.1.6120.002653
ORF1ab/nsp13419P419SCcaTca11B.1.6180.004032
ORF1ab/nsp13419P419SCcaTca11B.1.6380.052632
ORF1ab/nsp13419P419SCcaTca11B.40.002208
ORF1ab/nsp13419P419SCcaTca11B.60.00091
ORF1ab/nsp13419P419SCcaTca11P.1.120.000484
ORF1ab/nsp13419P419SCcaTca11P.1.170.000162
ORF1ab/nsp13419P419SCcaTca11P.1.20.001156
ORF1ab/nsp13419P419SCcaTca11P.1.40.000977
ORF1ab/nsp13419P419SCcaTca11P.1.70.000319
ORF1ab/nsp13419P419SCcaTca11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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