CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 419

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13419P419SP5743SnonsynCcaTca1482014820117491-17493
ORF1ab/nsp13419P419PP5743PsynccAccG4172370.56834517491-17493
ORF1ab/nsp13419P419PP5743PsynccAccT4171360.32613917491-17493
ORF1ab/nsp13419P419PP5743PsynccAccC417440.10551617491-17493
ORF1ab/nsp13419P419LP5743LnonsyncCacTa43380.88372117491-17493
ORF1ab/nsp13419P419LP5743LnonsynCCaTTa4350.11627917491-17493
ORF1ab/nsp13419P419delP5743deldelCCA---2929117491-17493
ORF1ab/nsp13419P419QP5743QnonsyncCacAa77117491-17493
ORF1ab/nsp13419P419AP5743AnonsynCcaGca44117491-17493
ORF1ab/nsp13419P419TP5743TnonsynCcaAca33117491-17493
ORF1ab/nsp13419P419del1P5743del1delCca-ca320.66666717491-17493
ORF1ab/nsp13419P419del1P5743del1delccAcc-310.33333317491-17493
ORF1ab/nsp13419P419XP5743XnonsynCCATAG22117491-17493

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13419P419SCcaTca1482014820All0.002835
ORF1ab/nsp13419P419SCcaTca1107511075B.1.6210.980349
ORF1ab/nsp13419P419SCcaTca19671967B.1.621.10.994942
ORF1ab/nsp13419P419SCcaTca469469B.1.1.70.00042
ORF1ab/nsp13419P419PccAccG237417All0.000045
ORF1ab/nsp13419P419PccAccT136417All0.000026
ORF1ab/nsp13419P419PccAccC44417All0.000008
ORF1ab/nsp13419P419PccAccG130132AY.30.001293
ORF1ab/nsp13419P419PccAccT2132AY.30.00002
ORF1ab/nsp13419P419SCcaTca129129AY.440.000785
ORF1ab/nsp13419P419SCcaTca121121B.10.001108
ORF1ab/nsp13419P419SCcaTca100100B.1.1600.003119
ORF1ab/nsp13419P419SCcaTca9797B.1.1.1570.088584
ORF1ab/nsp13419P419SCcaTca7878B.1.2580.005191
ORF1ab/nsp13419P419SCcaTca5151AY.50.001053
ORF1ab/nsp13419P419PccAccT2347B.1.1.70.000021
ORF1ab/nsp13419P419PccAccG2047B.1.1.70.000018
ORF1ab/nsp13419P419PccAccC447B.1.1.70.000004
ORF1ab/nsp13419P419LcCacTa3843All0.000007
ORF1ab/nsp13419P419LCCaTTa543All0.000001
ORF1ab/nsp13419P419SCcaTca4040AY.40.000062
ORF1ab/nsp13419P419SCcaTca4040B.1.617.20.000151
ORF1ab/nsp13419P419PccAccT3037B.1.617.20.000113
ORF1ab/nsp13419P419PccAccC537B.1.617.20.000019
ORF1ab/nsp13419P419PccAccG237B.1.617.20.000008
ORF1ab/nsp13419P419SCcaTca3636B.1.1770.000474
ORF1ab/nsp13419P419SCcaTca3434AY.1030.000211
ORF1ab/nsp13419P419SCcaTca3434AY.30.000338
ORF1ab/nsp13419P419SCcaTca3232B.1.1.3791
ORF1ab/nsp13419P419delCCA---2929All0.000006
ORF1ab/nsp13419P419PccAccT2829B.10.000256
ORF1ab/nsp13419P419PccAccC129B.10.000009
ORF1ab/nsp13419P419PccAccG2527AY.40.000039
ORF1ab/nsp13419P419PccAccT227AY.40.000003
ORF1ab/nsp13419P419PccAccT1623AY.440.000097
ORF1ab/nsp13419P419PccAccG523AY.440.00003
ORF1ab/nsp13419P419PccAccC223AY.440.000012
ORF1ab/nsp13419P419SCcaTca2222AY.470.000684
ORF1ab/nsp13419P419SCcaTca2222P.10.000347
ORF1ab/nsp13419P419SCcaTca2121B.1.20.000185
ORF1ab/nsp13419P419SCcaTca2020B.1.10.000363
ORF1ab/nsp13419P419SCcaTca1818AY.250.000108
ORF1ab/nsp13419P419SCcaTca1818AY.9.20.000661
ORF1ab/nsp13419P419SCcaTca1818B.1.617.10.002321
ORF1ab/nsp13419P419SCcaTca1515AY.430.000066
ORF1ab/nsp13419P419SCcaTca1414B.1.4290.000329
ORF1ab/nsp13419P419SCcaTca1313B.1.1.5190.000516
ORF1ab/nsp13419P419SCcaTca1111AY.420.000443
ORF1ab/nsp13419P419LcCacTa1111B.10.000101
ORF1ab/nsp13419P419delCCA---1111B.1.1.70.00001
ORF1ab/nsp13419P419SCcaTca1010AY.1170.000845
ORF1ab/nsp13419P419SCcaTca1010AY.920.002873
ORF1ab/nsp13419P419SCcaTca1010B.1.5410.044248
ORF1ab/nsp13419P419SCcaTca99AY.200.00035
ORF1ab/nsp13419P419SCcaTca99B.1.1.500.00611
ORF1ab/nsp13419P419SCcaTca99P.20.00168
ORF1ab/nsp13419P419QcCacAa77All0.000001
ORF1ab/nsp13419P419SCcaTca77AY.290.00011
ORF1ab/nsp13419P419SCcaTca77AY.390.000173
ORF1ab/nsp13419P419SCcaTca77B0.000895
ORF1ab/nsp13419P419LcCacTa47B.1.1.70.000004
ORF1ab/nsp13419P419LCCaTTa37B.1.1.70.000003
ORF1ab/nsp13419P419SCcaTca77B.1.3510.000208
ORF1ab/nsp13419P419SCcaTca66AY.1020.000159
ORF1ab/nsp13419P419PccAccG46AY.1030.000025
ORF1ab/nsp13419P419PccAccC16AY.1030.000006
ORF1ab/nsp13419P419PccAccT16AY.1030.000006
ORF1ab/nsp13419P419PccAccT46B.1.20.000035
ORF1ab/nsp13419P419PccAccC16B.1.20.000009
ORF1ab/nsp13419P419PccAccG16B.1.20.000009
ORF1ab/nsp13419P419PccAccC66B.1.466.20.002347
ORF1ab/nsp13419P419SCcaTca66B.1.4970.001889
ORF1ab/nsp13419P419SCcaTca66B.1.5960.000523
ORF1ab/nsp13419P419SCcaTca66B.1.6230.003219
ORF1ab/nsp13419P419SCcaTca66D.20.00045
ORF1ab/nsp13419P419PccAccT66P.1.140.000287
ORF1ab/nsp13419P419PccAccG45AY.1020.000106
ORF1ab/nsp13419P419PccAccT15AY.1020.000027
ORF1ab/nsp13419P419PccAccG55AY.4.40.002046
ORF1ab/nsp13419P419SCcaTca55B.1.177.730.002831
ORF1ab/nsp13419P419SCcaTca55P.1.140.000239
ORF1ab/nsp13419P419PccAccT55P.1.160.001871
ORF1ab/nsp13419P419PccAccT440.222222
ORF1ab/nsp13419P419ACcaGca44All0.000001
ORF1ab/nsp13419P419SCcaTca44AY.140.000352
ORF1ab/nsp13419P419SCcaTca44AY.260.000113
ORF1ab/nsp13419P419PccAccG24AY.390.000049
ORF1ab/nsp13419P419PccAccC14AY.390.000025
ORF1ab/nsp13419P419PccAccT14AY.390.000025
ORF1ab/nsp13419P419PccAccC24AY.430.000009
ORF1ab/nsp13419P419PccAccG14AY.430.000004
ORF1ab/nsp13419P419PccAccT14AY.430.000004
ORF1ab/nsp13419P419SCcaTca44AY.690.000747
ORF1ab/nsp13419P419PccAccG44AY.90.00027
ORF1ab/nsp13419P419PccAccG34B.1.10.000054
ORF1ab/nsp13419P419PccAccC14B.1.10.000018
ORF1ab/nsp13419P419PccAccC44B.1.1.280.001245
ORF1ab/nsp13419P419SCcaTca44B.1.177.350.002764
ORF1ab/nsp13419P419PccAccC44B.1.4290.000094
ORF1ab/nsp13419P419SCcaTca44B.1.4690.01444
ORF1ab/nsp13419P419SCcaTca44B.1.5330.038462
ORF1ab/nsp13419P419SCcaTca44P.1.150.000929
ORF1ab/nsp13419P419TCcaAca33All0.000001
ORF1ab/nsp13419P419del1Cca-ca23All0
ORF1ab/nsp13419P419del1ccAcc-13All0
ORF1ab/nsp13419P419SCcaTca33AY.1000.000138
ORF1ab/nsp13419P419SCcaTca33AY.1110.000549
ORF1ab/nsp13419P419SCcaTca33AY.1180.000188
ORF1ab/nsp13419P419PccAccG23AY.290.000032
ORF1ab/nsp13419P419PccAccC13AY.290.000016
ORF1ab/nsp13419P419SCcaTca33AY.39.10.000119
ORF1ab/nsp13419P419SCcaTca33AY.610.000314
ORF1ab/nsp13419P419PccAccT33AY.680.000821
ORF1ab/nsp13419P419PccAccG33AY.770.003382
ORF1ab/nsp13419P419SCcaTca33B.1.1.2140.000166
ORF1ab/nsp13419P419PccAccG33B.1.1.390.001529
ORF1ab/nsp13419P419SCcaTca33B.1.1.3970.006757
ORF1ab/nsp13419P419ACcaGca33B.1.1.70.000003
ORF1ab/nsp13419P419SCcaTca33B.1.177.460.002755
ORF1ab/nsp13419P419LcCacTa33B.1.20.000026
ORF1ab/nsp13419P419SCcaTca33B.1.2210.000213
ORF1ab/nsp13419P419SCcaTca33B.1.3200.003736
ORF1ab/nsp13419P419SCcaTca33B.1.3620.004622
ORF1ab/nsp13419P419SCcaTca33B.1.4270.000151
ORF1ab/nsp13419P419SCcaTca33B.1.4800.007463
ORF1ab/nsp13419P419SCcaTca33B.1.5820.001472
ORF1ab/nsp13419P419SCcaTca33B.1.6260.017143
ORF1ab/nsp13419P419SCcaTca33C.180.007772
ORF1ab/nsp13419P419PccAccG23P.10.000032
ORF1ab/nsp13419P419PccAccT13P.10.000016
ORF1ab/nsp13419P419PccAccC33P.20.00056
ORF1ab/nsp13419P419XCCATAG220.111111
ORF1ab/nsp13419P419LCCaTTa220.111111
ORF1ab/nsp13419P419PccAccG22A.10.000564
ORF1ab/nsp13419P419SCcaTca22A.20.001324
ORF1ab/nsp13419P419XCCATAG22All0
ORF1ab/nsp13419P419SCcaTca22AY.1060.00067
ORF1ab/nsp13419P419SCcaTca22AY.1090.001479
ORF1ab/nsp13419P419SCcaTca22AY.1190.000071
ORF1ab/nsp13419P419SCcaTca22AY.1210.000271
ORF1ab/nsp13419P419SCcaTca22AY.23.10.000835
ORF1ab/nsp13419P419SCcaTca22AY.3.10.000171
ORF1ab/nsp13419P419PccAccC22AY.330.000134
ORF1ab/nsp13419P419SCcaTca22AY.330.000134
ORF1ab/nsp13419P419SCcaTca22AY.4.20.000043
ORF1ab/nsp13419P419SCcaTca22AY.4.40.000818
ORF1ab/nsp13419P419SCcaTca22AY.540.000191
ORF1ab/nsp13419P419PccAccG22AY.650.001066
ORF1ab/nsp13419P419SCcaTca22AY.90.000135
ORF1ab/nsp13419P419SCcaTca22AY.990.002099
ORF1ab/nsp13419P419QcCacAa22B.10.000018
ORF1ab/nsp13419P419LcCacTa22B.1.10.000036
ORF1ab/nsp13419P419PccAccG22B.1.1.1960.011429
ORF1ab/nsp13419P419PccAccC22B.1.1.5190.000079
ORF1ab/nsp13419P419SCcaTca22B.1.1.700.000682
ORF1ab/nsp13419P419PccAccG22B.1.1770.000026
ORF1ab/nsp13419P419SCcaTca22B.1.177.120.000303
ORF1ab/nsp13419P419SCcaTca22B.1.258.170.000208
ORF1ab/nsp13419P419SCcaTca22B.1.3150.012121
ORF1ab/nsp13419P419SCcaTca22B.1.36.80.002
ORF1ab/nsp13419P419SCcaTca22B.1.3610.002577
ORF1ab/nsp13419P419SCcaTca22B.1.3670.001585
ORF1ab/nsp13419P419SCcaTca22B.1.3750.001639
ORF1ab/nsp13419P419SCcaTca22B.1.3990.003868
ORF1ab/nsp13419P419SCcaTca22B.1.5750.000607
ORF1ab/nsp13419P419SCcaTca22C.370.000232
ORF1ab/nsp13419P419LcCacTa22D.20.00015
ORF1ab/nsp13419P419SCcaTca22R.10.00018
ORF1ab/nsp13419P419SCcaTca11A0.000387
ORF1ab/nsp13419P419TCcaAca11A0.000387
ORF1ab/nsp13419P419PccAccG11A0.000387
ORF1ab/nsp13419P419SCcaTca11A.2.50.000499
ORF1ab/nsp13419P419delCCA---11AD.20.000219
ORF1ab/nsp13419P419SCcaTca11AY.10.000396
ORF1ab/nsp13419P419PccAccG11AY.100.00053
ORF1ab/nsp13419P419SCcaTca11AY.1080.001103
ORF1ab/nsp13419P419SCcaTca11AY.1100.000113
ORF1ab/nsp13419P419SCcaTca11AY.116.10.000311
ORF1ab/nsp13419P419PccAccT11AY.1180.000063
ORF1ab/nsp13419P419SCcaTca11AY.120.000316
ORF1ab/nsp13419P419SCcaTca11AY.1200.000037
ORF1ab/nsp13419P419PccAccT11AY.1200.000037
ORF1ab/nsp13419P419SCcaTca11AY.160.00038
ORF1ab/nsp13419P419SCcaTca11AY.16.10.00047
ORF1ab/nsp13419P419SCcaTca11AY.190.00114
ORF1ab/nsp13419P419SCcaTca11AY.210.001898
ORF1ab/nsp13419P419PccAccT11AY.230.00007
ORF1ab/nsp13419P419SCcaTca11AY.230.00007
ORF1ab/nsp13419P419SCcaTca11AY.340.000097
ORF1ab/nsp13419P419LcCacTa11AY.390.000025
ORF1ab/nsp13419P419delCCA---11AY.40.000002
ORF1ab/nsp13419P419SCcaTca11AY.4.50.000107
ORF1ab/nsp13419P419QcCacAa11AY.430.000004
ORF1ab/nsp13419P419LcCacTa11AY.430.000004
ORF1ab/nsp13419P419delCCA---11AY.430.000004
ORF1ab/nsp13419P419QcCacAa11AY.440.000006
ORF1ab/nsp13419P419SCcaTca11AY.450.000122
ORF1ab/nsp13419P419SCcaTca11AY.46.10.001027
ORF1ab/nsp13419P419PccAccG11AY.50.000021
ORF1ab/nsp13419P419SCcaTca11AY.5.30.000337
ORF1ab/nsp13419P419SCcaTca11AY.520.000814
ORF1ab/nsp13419P419SCcaTca11AY.530.000288
ORF1ab/nsp13419P419PccAccG11AY.540.000095
ORF1ab/nsp13419P419SCcaTca11AY.580.000907
ORF1ab/nsp13419P419SCcaTca11AY.60.000041
ORF1ab/nsp13419P419PccAccG11AY.60.000041
ORF1ab/nsp13419P419PccAccT11AY.610.000105
ORF1ab/nsp13419P419LcCacTa11AY.680.000274
ORF1ab/nsp13419P419PccAccG11AY.730.000665
ORF1ab/nsp13419P419SCcaTca11AY.750.000056
ORF1ab/nsp13419P419SCcaTca11AY.75.10.00018
ORF1ab/nsp13419P419SCcaTca11AY.840.000437
ORF1ab/nsp13419P419SCcaTca11AY.890.004902
ORF1ab/nsp13419P419PccAccG11AY.9.20.000037
ORF1ab/nsp13419P419SCcaTca11AY.910.00073
ORF1ab/nsp13419P419SCcaTca11AY.98.10.000048
ORF1ab/nsp13419P419delCCA---11AY.99.10.001553
ORF1ab/nsp13419P419SCcaTca11AZ.60.008403
ORF1ab/nsp13419P419delCCA---11B.10.000009
ORF1ab/nsp13419P419del1ccAcc-11B.10.000009
ORF1ab/nsp13419P419TCcaAca11B.10.000009
ORF1ab/nsp13419P419QcCacAa11B.1.10.000018
ORF1ab/nsp13419P419SCcaTca11B.1.1.1410.002012
ORF1ab/nsp13419P419SCcaTca11B.1.1.1630.007634
ORF1ab/nsp13419P419PccAccG11B.1.1.2270.004348
ORF1ab/nsp13419P419SCcaTca11B.1.1.2360.006897
ORF1ab/nsp13419P419SCcaTca11B.1.1.2370.005405
ORF1ab/nsp13419P419SCcaTca11B.1.1.3170.000412
ORF1ab/nsp13419P419PccAccT11B.1.1.3180.000302
ORF1ab/nsp13419P419SCcaTca11B.1.1.3370.003597
ORF1ab/nsp13419P419SCcaTca11B.1.1.3540.004386
ORF1ab/nsp13419P419SCcaTca11B.1.1.370.000193
ORF1ab/nsp13419P419PccAccT11B.1.1.370.000193
ORF1ab/nsp13419P419PccAccC11B.1.1.4320.001266
ORF1ab/nsp13419P419SCcaTca11B.1.1.4320.001266
ORF1ab/nsp13419P419del1Cca-ca11B.1.1.70.000001
ORF1ab/nsp13419P419SCcaTca11B.1.1.740.00431
ORF1ab/nsp13419P419SCcaTca11B.1.1.990.02381
ORF1ab/nsp13419P419PccAccG11B.1.110.30.000718
ORF1ab/nsp13419P419SCcaTca11B.1.1270.002198
ORF1ab/nsp13419P419SCcaTca11B.1.130.002375
ORF1ab/nsp13419P419LcCacTa11B.1.1390.000733
ORF1ab/nsp13419P419LcCacTa11B.1.1600.000031
ORF1ab/nsp13419P419SCcaTca11B.1.160.110.005714
ORF1ab/nsp13419P419SCcaTca11B.1.160.330.004425
ORF1ab/nsp13419P419LcCacTa11B.1.1770.000013
ORF1ab/nsp13419P419del1Cca-ca11B.1.1770.000013
ORF1ab/nsp13419P419delCCA---11B.1.1770.000013
ORF1ab/nsp13419P419SCcaTca11B.1.177.150.000631
ORF1ab/nsp13419P419delCCA---11B.1.177.160.000664
ORF1ab/nsp13419P419SCcaTca11B.1.177.180.00116
ORF1ab/nsp13419P419SCcaTca11B.1.177.200.001517
ORF1ab/nsp13419P419SCcaTca11B.1.177.230.003236
ORF1ab/nsp13419P419delCCA---11B.1.177.540.000606
ORF1ab/nsp13419P419delCCA---11B.1.177.570.000281
ORF1ab/nsp13419P419SCcaTca11B.1.177.580.001332
ORF1ab/nsp13419P419PccAccG11B.1.177.600.000218
ORF1ab/nsp13419P419delCCA---11B.1.177.690.001484
ORF1ab/nsp13419P419SCcaTca11B.1.177.70.000165
ORF1ab/nsp13419P419TCcaAca11B.1.177.730.000566
ORF1ab/nsp13419P419QcCacAa11B.1.177.730.000566
ORF1ab/nsp13419P419delCCA---11B.1.177.760.002494
ORF1ab/nsp13419P419delCCA---11B.1.1790.003759
ORF1ab/nsp13419P419SCcaTca11B.1.2220.001692
ORF1ab/nsp13419P419SCcaTca11B.1.2340.000132
ORF1ab/nsp13419P419SCcaTca11B.1.2430.00007
ORF1ab/nsp13419P419PccAccC11B.1.2430.00007
ORF1ab/nsp13419P419delCCA---11B.1.2580.000067
ORF1ab/nsp13419P419PccAccT11B.1.30.002618
ORF1ab/nsp13419P419PccAccG11B.1.3490.000715
ORF1ab/nsp13419P419SCcaTca11B.1.351.30.000876
ORF1ab/nsp13419P419SCcaTca11B.1.360.000146
ORF1ab/nsp13419P419LcCacTa11B.1.360.000146
ORF1ab/nsp13419P419SCcaTca11B.1.36.180.00042
ORF1ab/nsp13419P419LcCacTa11B.1.36.360.000602
ORF1ab/nsp13419P419PccAccC11B.1.3670.000792
ORF1ab/nsp13419P419SCcaTca11B.1.3690.000285
ORF1ab/nsp13419P419SCcaTca11B.1.3910.001127
ORF1ab/nsp13419P419LcCacTa11B.1.3960.000706
ORF1ab/nsp13419P419LcCacTa11B.1.3990.001934
ORF1ab/nsp13419P419delCCA---11B.1.4150.014286
ORF1ab/nsp13419P419PccAccC11B.1.4270.00005
ORF1ab/nsp13419P419SCcaTca11B.1.438.10.000107
ORF1ab/nsp13419P419PccAccG11B.1.5090.000866
ORF1ab/nsp13419P419SCcaTca11B.1.5250.000113
ORF1ab/nsp13419P419SCcaTca11B.1.5260.000024
ORF1ab/nsp13419P419SCcaTca11B.1.5550.022222
ORF1ab/nsp13419P419SCcaTca11B.1.5610.000397
ORF1ab/nsp13419P419delCCA---11B.1.5770.000687
ORF1ab/nsp13419P419LcCacTa11B.1.5810.009434
ORF1ab/nsp13419P419LcCacTa11B.1.5950.000261
ORF1ab/nsp13419P419LcCacTa11B.1.5990.00365
ORF1ab/nsp13419P419SCcaTca11B.1.6120.002653
ORF1ab/nsp13419P419LcCacTa11B.1.617.20.000004
ORF1ab/nsp13419P419delCCA---11B.1.617.20.000004
ORF1ab/nsp13419P419SCcaTca11B.1.6180.004032
ORF1ab/nsp13419P419ACcaGca11B.1.6210.000089
ORF1ab/nsp13419P419delCCA---11B.1.6300.005236
ORF1ab/nsp13419P419SCcaTca11B.1.6380.052632
ORF1ab/nsp13419P419SCcaTca11B.40.002208
ORF1ab/nsp13419P419LcCacTa11B.4.50.011905
ORF1ab/nsp13419P419SCcaTca11B.60.00091
ORF1ab/nsp13419P419QcCacAa11B.60.00091
ORF1ab/nsp13419P419PccAccT11C.370.000116
ORF1ab/nsp13419P419PccAccG11D.20.000075
ORF1ab/nsp13419P419SCcaTca11P.1.120.000484
ORF1ab/nsp13419P419SCcaTca11P.1.170.000162
ORF1ab/nsp13419P419SCcaTca11P.1.20.001156
ORF1ab/nsp13419P419SCcaTca11P.1.40.000977
ORF1ab/nsp13419P419SCcaTca11P.1.70.000319
ORF1ab/nsp13419P419SCcaTca11Q.40.000455
ORF1ab/nsp13419P419delCCA---11U.30.003861
ORF1ab/nsp13419P419LcCacTa11W.40.001351