CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 419 | P419S | P5743S | nonsyn | Cca | Tca | 14820 | 14820 | 1 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419P | P5743P | syn | ccA | ccG | 417 | 237 | 0.568345 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419P | P5743P | syn | ccA | ccT | 417 | 136 | 0.326139 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419P | P5743P | syn | ccA | ccC | 417 | 44 | 0.105516 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419L | P5743L | nonsyn | cCa | cTa | 43 | 38 | 0.883721 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419L | P5743L | nonsyn | CCa | TTa | 43 | 5 | 0.116279 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419del | P5743del | del | CCA | --- | 29 | 29 | 1 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419Q | P5743Q | nonsyn | cCa | cAa | 7 | 7 | 1 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419A | P5743A | nonsyn | Cca | Gca | 4 | 4 | 1 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419T | P5743T | nonsyn | Cca | Aca | 3 | 3 | 1 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419del1 | P5743del1 | del | Cca | -ca | 3 | 2 | 0.666667 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419del1 | P5743del1 | del | ccA | cc- | 3 | 1 | 0.333333 | 17491-17493 |
ORF1ab/nsp13 | 419 | P419X | P5743X | nonsyn | CCA | TAG | 2 | 2 | 1 | 17491-17493 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 14820 | 14820 | All | 0.002835 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 11075 | 11075 | B.1.621 | 0.980349 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1967 | 1967 | B.1.621.1 | 0.994942 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 469 | 469 | B.1.1.7 | 0.00042 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 237 | 417 | All | 0.000045 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 136 | 417 | All | 0.000026 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 44 | 417 | All | 0.000008 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 130 | 132 | AY.3 | 0.001293 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 2 | 132 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 129 | 129 | AY.44 | 0.000785 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 121 | 121 | B.1 | 0.001108 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 100 | 100 | B.1.160 | 0.003119 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 97 | 97 | B.1.1.157 | 0.088584 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 78 | 78 | B.1.258 | 0.005191 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 51 | 51 | AY.5 | 0.001053 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 23 | 47 | B.1.1.7 | 0.000021 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 20 | 47 | B.1.1.7 | 0.000018 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 4 | 47 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 38 | 43 | All | 0.000007 |
ORF1ab/nsp13 | 419 | P419L | CCa | TTa | 5 | 43 | All | 0.000001 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 40 | 40 | B.1.617.2 | 0.000151 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 30 | 37 | B.1.617.2 | 0.000113 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 5 | 37 | B.1.617.2 | 0.000019 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 37 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 36 | 36 | B.1.177 | 0.000474 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 34 | 34 | AY.3 | 0.000338 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 32 | 32 | B.1.1.379 | 1 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 29 | 29 | All | 0.000006 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 28 | 29 | B.1 | 0.000256 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 29 | B.1 | 0.000009 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 25 | 27 | AY.4 | 0.000039 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 2 | 27 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 16 | 23 | AY.44 | 0.000097 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 5 | 23 | AY.44 | 0.00003 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 2 | 23 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 22 | 22 | AY.47 | 0.000684 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 18 | 18 | AY.9.2 | 0.000661 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 18 | 18 | B.1.617.1 | 0.002321 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 14 | 14 | B.1.429 | 0.000329 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 10 | 10 | AY.92 | 0.002873 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 10 | 10 | B.1.541 | 0.044248 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp13 | 419 | P419Q | cCa | cAa | 7 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 7 | 7 | B | 0.000895 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 4 | 7 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 419 | P419L | CCa | TTa | 3 | 7 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 4 | 6 | AY.103 | 0.000025 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 6 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 6 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 4 | 6 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 6 | 6 | B.1.497 | 0.001889 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 6 | 6 | B.1.623 | 0.003219 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 4 | 5 | AY.102 | 0.000106 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 5 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 5 | 5 | B.1.177.73 | 0.002831 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 419 | P419A | Cca | Gca | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 4 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 4 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 4 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 2 | 4 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 4 | 4 | B.1.177.35 | 0.002764 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 4 | 4 | B.1.533 | 0.038462 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp13 | 419 | P419T | Cca | Aca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 419 | P419del1 | Cca | -ca | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 419 | P419del1 | ccA | cc- | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 3 | AY.29 | 0.000032 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 3 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp13 | 419 | P419A | Cca | Gca | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.177.46 | 0.002755 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.320 | 0.003736 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.480 | 0.007463 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | B.1.626 | 0.017143 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 3 | 3 | C.18 | 0.007772 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp13 | 419 | P419X | CCA | TAG | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 419 | P419L | CCa | TTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp13 | 419 | P419X | CCA | TAG | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp13 | 419 | P419Q | cCa | cAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 2 | B.1.1.196 | 0.011429 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.315 | 0.012121 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 419 | P419T | Cca | Aca | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 419 | P419Q | cCa | cAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 419 | P419Q | cCa | cAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | AZ.6 | 0.008403 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 419 | P419del1 | ccA | cc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 419 | P419T | Cca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 419 | P419Q | cCa | cAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp13 | 419 | P419del1 | Cca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 419 | P419del1 | Cca | -ca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 419 | P419T | Cca | Aca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 419 | P419Q | cCa | cAa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.555 | 0.022222 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp13 | 419 | P419A | Cca | Gca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 419 | P419Q | cCa | cAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 419 | P419P | ccA | ccG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 419 | P419S | Cca | Tca | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 419 | P419del | CCA | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp13 | 419 | P419L | cCa | cTa | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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