CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 416

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13416T416IT5740InonsynaCaaTa13111311117482-17484
ORF1ab/nsp13416T416TT5740TsynacAacG1651470.89090917482-17484
ORF1ab/nsp13416T416TT5740TsynacAacC165130.078787917482-17484
ORF1ab/nsp13416T416TT5740TsynacAacT16550.03030317482-17484
ORF1ab/nsp13416T416AT5740AnonsynAcaGca9797117482-17484
ORF1ab/nsp13416T416ST5740SnonsynAcaTca39380.97435917482-17484
ORF1ab/nsp13416T416ST5740SnonsynaCAaGT3910.02564117482-17484
ORF1ab/nsp13416T416delT5740deldelACA---2525117482-17484
ORF1ab/nsp13416T416PT5740PnonsynAcaCca13110.84615417482-17484
ORF1ab/nsp13416T416PT5740PnonsynAcACcT1320.15384617482-17484
ORF1ab/nsp13416T416VT5740VnonsynACAGTC320.66666717482-17484
ORF1ab/nsp13416T416VT5740VnonsynACAGTG310.33333317482-17484
ORF1ab/nsp13416T416del1T5740del1delAca-ca22117482-17484
ORF1ab/nsp13416T416RT5740RnonsynaCaaGa11117482-17484
ORF1ab/nsp13416T416MT5740MnonsynaCAaTG11117482-17484
ORF1ab/nsp13416T416WT5740WnonsynACATGG11117482-17484

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13416T416IaCaaTa13111311All0.000251
ORF1ab/nsp13416T416IaCaaTa893893B.1.5680.992222
ORF1ab/nsp13416T416TacAacG147165All0.000028
ORF1ab/nsp13416T416TacAacC13165All0.000002
ORF1ab/nsp13416T416TacAacT5165All0.000001
ORF1ab/nsp13416T416AAcaGca9797All0.000019
ORF1ab/nsp13416T416IaCaaTa6666B.1.5260.001551
ORF1ab/nsp13416T416IaCaaTa4444B.10.000403
ORF1ab/nsp13416T416IaCaaTa4343AY.430.000191
ORF1ab/nsp13416T416IaCaaTa4343B.1.1.70.000038
ORF1ab/nsp13416T416IaCaaTa4242AY.40.000065
ORF1ab/nsp13416T416TacAacG3842B.1.1.70.000034
ORF1ab/nsp13416T416TacAacC342B.1.1.70.000003
ORF1ab/nsp13416T416TacAacT142B.1.1.70.000001
ORF1ab/nsp13416T416SAcaTca3839All0.000007
ORF1ab/nsp13416T416SaCAaGT139All0
ORF1ab/nsp13416T416TacAacG2929AY.200.001127
ORF1ab/nsp13416T416delACA---2525All0.000005
ORF1ab/nsp13416T416AAcaGca2121B0.002684
ORF1ab/nsp13416T416TacAacG1617AY.40.000025
ORF1ab/nsp13416T416TacAacC117AY.40.000002
ORF1ab/nsp13416T416IaCaaTa1616B.1.617.20.00006
ORF1ab/nsp13416T416PAcaCca1113All0.000002
ORF1ab/nsp13416T416PAcACcT213All0
ORF1ab/nsp13416T416IaCaaTa1313P.10.000205
ORF1ab/nsp13416T416IaCaaTa1212AY.39.10.000475
ORF1ab/nsp13416T416TacAacG1212B.1.6370.000877
ORF1ab/nsp13416T416IaCaaTa1212P.1.160.004489
ORF1ab/nsp13416T416IaCaaTa1010AY.470.000311
ORF1ab/nsp13416T416AAcaGca1010B.10.000092
ORF1ab/nsp13416T416delACA---1010B.1.1.70.000009
ORF1ab/nsp13416T416AAcaGca99B.1.1.70.000008
ORF1ab/nsp13416T416IaCaaTa99B.1.20.000079
ORF1ab/nsp13416T416IaCaaTa99B.1.5820.004416
ORF1ab/nsp13416T416IaCaaTa88AY.98.10.000387
ORF1ab/nsp13416T416SAcaTca77B.1.1.70.000006
ORF1ab/nsp13416T416AAcaGca77B.1.177.730.003964
ORF1ab/nsp13416T416TacAacG66AY.1020.000159
ORF1ab/nsp13416T416IaCaaTa66AY.60.000247
ORF1ab/nsp13416T416IaCaaTa66B.1.1770.000079
ORF1ab/nsp13416T416IaCaaTa66B.1.6120.015915
ORF1ab/nsp13416T416AAcaGca55AY.1030.000031
ORF1ab/nsp13416T416TacAacG55AY.1030.000031
ORF1ab/nsp13416T416IaCaaTa55AY.1030.000031
ORF1ab/nsp13416T416TacAacG55AY.3.10.000426
ORF1ab/nsp13416T416AAcaGca55AY.40.000008
ORF1ab/nsp13416T416TacAacG55AY.50.000103
ORF1ab/nsp13416T416TacAacG45B.10.000037
ORF1ab/nsp13416T416TacAacT15B.10.000009
ORF1ab/nsp13416T416AAcaGca55B.1.1.630.001929
ORF1ab/nsp13416T416SAcaTca55P.10.000079
ORF1ab/nsp13416T416IaCaaTa44AY.1020.000106
ORF1ab/nsp13416T416PAcaCca44AY.430.000018
ORF1ab/nsp13416T416IaCaaTa44AY.440.000024
ORF1ab/nsp13416T416AAcaGca44AY.440.000024
ORF1ab/nsp13416T416SAcaTca44AY.50.000083
ORF1ab/nsp13416T416SAcaTca44B.1.1.3160.0037
ORF1ab/nsp13416T416TacAacG44B.1.3960.002823
ORF1ab/nsp13416T416IaCaaTa44B.1.5960.000349
ORF1ab/nsp13416T416TacAacG44B.1.617.20.000015
ORF1ab/nsp13416T416SAcaTca44Q.30.00058
ORF1ab/nsp13416T416VACAGTC23All0
ORF1ab/nsp13416T416VACAGTG13All0
ORF1ab/nsp13416T416IaCaaTa33AY.250.000018
ORF1ab/nsp13416T416TacAacC23AY.250.000012
ORF1ab/nsp13416T416TacAacG13AY.250.000006
ORF1ab/nsp13416T416TacAacG23AY.430.000009
ORF1ab/nsp13416T416TacAacC13AY.430.000004
ORF1ab/nsp13416T416AAcaGca33AY.5.30.001012
ORF1ab/nsp13416T416AAcaGca33B.1.20.000026
ORF1ab/nsp13416T416TacAacG23B.1.20.000018
ORF1ab/nsp13416T416TacAacT13B.1.20.000009
ORF1ab/nsp13416T416IaCaaTa33B.1.6210.000266
ORF1ab/nsp13416T416TacAacC33P.20.00056
ORF1ab/nsp13416T416AAcaGca33Q.10.000379
ORF1ab/nsp13416T416PAcACcT220.111111
ORF1ab/nsp13416T416VACAGTC220.111111
ORF1ab/nsp13416T416TacAacT220.111111
ORF1ab/nsp13416T416AAcaGca220.111111
ORF1ab/nsp13416T416del1Aca-ca22All0
ORF1ab/nsp13416T416IaCaaTa22AU.30.004219
ORF1ab/nsp13416T416SAcaTca22AY.1030.000012
ORF1ab/nsp13416T416IaCaaTa22AY.30.00002
ORF1ab/nsp13416T416SAcaTca22AY.40.000003
ORF1ab/nsp13416T416IaCaaTa22AY.450.000243
ORF1ab/nsp13416T416TacAacG22AY.480.00093
ORF1ab/nsp13416T416IaCaaTa22AY.5.40.000553
ORF1ab/nsp13416T416TacAacG12AY.60.000041
ORF1ab/nsp13416T416TacAacC12AY.60.000041
ORF1ab/nsp13416T416SAcaTca22AY.650.001066
ORF1ab/nsp13416T416AAcaGca22AY.980.000158
ORF1ab/nsp13416T416IaCaaTa22AZ.20.001642
ORF1ab/nsp13416T416TacAacG22B.1.2500.028986
ORF1ab/nsp13416T416IaCaaTa22B.1.2580.000133
ORF1ab/nsp13416T416IaCaaTa22B.1.360.000292
ORF1ab/nsp13416T416AAcaGca22B.1.4270.000101
ORF1ab/nsp13416T416delACA---22B.1.617.20.000008
ORF1ab/nsp13416T416IaCaaTa22L.30.007092
ORF1ab/nsp13416T416AAcaGca22P.10.000032
ORF1ab/nsp13416T416PAcaCca11A.10.000282
ORF1ab/nsp13416T416delACA---11AD.20.000219
ORF1ab/nsp13416T416IaCaaTa11AD.20.000219
ORF1ab/nsp13416T416RaCaaGa11All0
ORF1ab/nsp13416T416MaCAaTG11All0
ORF1ab/nsp13416T416WACATGG11All0
ORF1ab/nsp13416T416AAcaGca11AY.1000.000046
ORF1ab/nsp13416T416AAcaGca11AY.1190.000035
ORF1ab/nsp13416T416IaCaaTa11AY.120.000316
ORF1ab/nsp13416T416IaCaaTa11AY.1200.000037
ORF1ab/nsp13416T416TacAacG11AY.1210.000135
ORF1ab/nsp13416T416delACA---11AY.230.00007
ORF1ab/nsp13416T416AAcaGca11AY.230.00007
ORF1ab/nsp13416T416AAcaGca11AY.250.000006
ORF1ab/nsp13416T416AAcaGca11AY.30.00001
ORF1ab/nsp13416T416TacAacG11AY.30.00001
ORF1ab/nsp13416T416IaCaaTa11AY.330.000067
ORF1ab/nsp13416T416IaCaaTa11AY.360.000148
ORF1ab/nsp13416T416IaCaaTa11AY.390.000025
ORF1ab/nsp13416T416AAcaGca11AY.39.10.00004
ORF1ab/nsp13416T416delACA---11AY.40.000002
ORF1ab/nsp13416T416IaCaaTa11AY.4.20.000022
ORF1ab/nsp13416T416TacAacG11AY.4.2.10.000149
ORF1ab/nsp13416T416PAcaCca11AY.420.00004
ORF1ab/nsp13416T416AAcaGca11AY.430.000004
ORF1ab/nsp13416T416SAcaTca11AY.440.000006
ORF1ab/nsp13416T416PAcaCca11AY.440.000006
ORF1ab/nsp13416T416del1Aca-ca11AY.440.000006
ORF1ab/nsp13416T416TacAacG11AY.440.000006
ORF1ab/nsp13416T416TacAacG11AY.46.40.000165
ORF1ab/nsp13416T416SAcaTca11AY.480.000465
ORF1ab/nsp13416T416IaCaaTa11AY.540.000095
ORF1ab/nsp13416T416IaCaaTa11AY.570.000656
ORF1ab/nsp13416T416PAcaCca11AY.670.000464
ORF1ab/nsp13416T416IaCaaTa11AY.720.001361
ORF1ab/nsp13416T416TacAacG11AY.730.000665
ORF1ab/nsp13416T416IaCaaTa11AY.75.10.00018
ORF1ab/nsp13416T416TacAacC11AY.9.10.000084
ORF1ab/nsp13416T416IaCaaTa11AY.9.20.000037
ORF1ab/nsp13416T416IaCaaTa11AY.980.000079
ORF1ab/nsp13416T416delACA---11AY.99.10.001553
ORF1ab/nsp13416T416SAcaTca11B.10.000009
ORF1ab/nsp13416T416RaCaaGa11B.10.000009
ORF1ab/nsp13416T416del1Aca-ca11B.10.000009
ORF1ab/nsp13416T416IaCaaTa11B.1.10.000018
ORF1ab/nsp13416T416SaCAaGT11B.1.10.000018
ORF1ab/nsp13416T416IaCaaTa11B.1.1.2070.001182
ORF1ab/nsp13416T416SAcaTca11B.1.1.250.000569
ORF1ab/nsp13416T416SAcaTca11B.1.1.3060.000438
ORF1ab/nsp13416T416IaCaaTa11B.1.1.3180.000302
ORF1ab/nsp13416T416SAcaTca11B.1.1.3290.003846
ORF1ab/nsp13416T416TacAacG11B.1.1.470.005348
ORF1ab/nsp13416T416MaCAaTG11B.1.1.70.000001
ORF1ab/nsp13416T416WACATGG11B.1.1.70.000001
ORF1ab/nsp13416T416AAcaGca11B.1.1600.000031
ORF1ab/nsp13416T416delACA---11B.1.177.540.000606
ORF1ab/nsp13416T416delACA---11B.1.177.690.001484
ORF1ab/nsp13416T416IaCaaTa11B.1.177.860.000183
ORF1ab/nsp13416T416delACA---11B.1.177.90.001332
ORF1ab/nsp13416T416delACA---11B.1.1790.003759
ORF1ab/nsp13416T416SAcaTca11B.1.20.000009
ORF1ab/nsp13416T416IaCaaTa11B.1.2120.016667
ORF1ab/nsp13416T416PAcaCca11B.1.2210.000071
ORF1ab/nsp13416T416IaCaaTa11B.1.221.30.000833
ORF1ab/nsp13416T416delACA---11B.1.2580.000067
ORF1ab/nsp13416T416IaCaaTa11B.1.3510.00003
ORF1ab/nsp13416T416AAcaGca11B.1.3510.00003
ORF1ab/nsp13416T416IaCaaTa11B.1.3670.000792
ORF1ab/nsp13416T416TacAacG11B.1.3690.000285
ORF1ab/nsp13416T416IaCaaTa11B.1.3960.000706
ORF1ab/nsp13416T416IaCaaTa11B.1.4130.004255
ORF1ab/nsp13416T416delACA---11B.1.4150.014286
ORF1ab/nsp13416T416AAcaGca11B.1.4290.000024
ORF1ab/nsp13416T416IaCaaTa11B.1.5170.000427
ORF1ab/nsp13416T416IaCaaTa11B.1.5600.00463
ORF1ab/nsp13416T416IaCaaTa11B.1.5760.000907
ORF1ab/nsp13416T416AAcaGca11B.1.5770.000687
ORF1ab/nsp13416T416delACA---11B.1.5770.000687
ORF1ab/nsp13416T416TacAacG11B.1.5890.007576
ORF1ab/nsp13416T416AAcaGca11B.1.5990.00365
ORF1ab/nsp13416T416SAcaTca11B.1.617.20.000004
ORF1ab/nsp13416T416AAcaGca11B.1.617.20.000004
ORF1ab/nsp13416T416IaCaaTa11B.1.619.10.000641
ORF1ab/nsp13416T416IaCaaTa11B.1.6280.000352
ORF1ab/nsp13416T416delACA---11B.1.6300.005236
ORF1ab/nsp13416T416IaCaaTa11B.1.6370.000073
ORF1ab/nsp13416T416IaCaaTa11B.1.810.021277
ORF1ab/nsp13416T416VACAGTG11B.40.002208
ORF1ab/nsp13416T416IaCaaTa11C.350.000774
ORF1ab/nsp13416T416TacAacC11C.370.000116
ORF1ab/nsp13416T416IaCaaTa11C.380.008065
ORF1ab/nsp13416T416PAcaCca11P.10.000016
ORF1ab/nsp13416T416IaCaaTa11P.1.10.000318
ORF1ab/nsp13416T416PAcaCca11P.1.140.000048
ORF1ab/nsp13416T416AAcaGca11Q.80.000165
ORF1ab/nsp13416T416IaCaaTa11R.10.00009
ORF1ab/nsp13416T416delACA---11U.30.003861