CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 413

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp13	413	T413I	T5737I	nonsyn	aCt	aTt	4877	4877	1	17473-17475
ORF1ab/nsp13	413	T413T	T5737T	syn	acT	acC	504	369	0.732143	17473-17475
ORF1ab/nsp13	413	T413T	T5737T	syn	acT	acG	504	103	0.204365	17473-17475
ORF1ab/nsp13	413	T413T	T5737T	syn	acT	acA	504	32	0.0634921	17473-17475
ORF1ab/nsp13	413	T413A	T5737A	nonsyn	Act	Gct	164	163	0.993902	17473-17475
ORF1ab/nsp13	413	T413A	T5737A	nonsyn	AcT	GcC	164	1	0.00609756	17473-17475
ORF1ab/nsp13	413	T413N	T5737N	nonsyn	aCt	aAt	59	59	1	17473-17475
ORF1ab/nsp13	413	T413del	T5737del	del	ACT	---	20	20	1	17473-17475
ORF1ab/nsp13	413	T413del1	T5737del1	del	AcT	Gc-	3	2	0.666667	17473-17475
ORF1ab/nsp13	413	T413del1	T5737del1	del	acT	ac-	3	1	0.333333	17473-17475
ORF1ab/nsp13	413	T413F	T5737F	nonsyn	ACT	TTC	2	2	1	17473-17475
ORF1ab/nsp13	413	T413G	T5737G	nonsyn	ACT	GGA	2	2	1	17473-17475
ORF1ab/nsp13	413	T413K	T5737K	nonsyn	aCT	aAA	2	1	0.5	17473-17475
ORF1ab/nsp13	413	T413del2	T5737del2	del	ACt	--t	2	1	0.5	17473-17475
ORF1ab/nsp13	413	T413del2	T5737del2	del	aCT	a--	2	1	0.5	17473-17475
ORF1ab/nsp13	413	T413K	T5737K	nonsyn	aCT	aAG	2	1	0.5	17473-17475
ORF1ab/nsp13	413	T413D	T5737D	nonsyn	ACT	GAC	1	1	1	17473-17475
ORF1ab/nsp13	413	T413P	T5737P	nonsyn	Act	Cct	1	1	1	17473-17475

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp13	413	T413I	aCt	aTt	4877	4877	All	0.000933
ORF1ab/nsp13	413	T413I	aCt	aTt	1539	1539	AY.4	0.002395
ORF1ab/nsp13	413	T413I	aCt	aTt	880	880	B.1.1.7	0.000788
ORF1ab/nsp13	413	T413T	acT	acC	369	504	All	0.000071
ORF1ab/nsp13	413	T413T	acT	acG	103	504	All	0.00002
ORF1ab/nsp13	413	T413T	acT	acA	32	504	All	0.000006
ORF1ab/nsp13	413	T413T	acT	acC	281	281	AY.25	0.00169
ORF1ab/nsp13	413	T413I	aCt	aTt	232	232	B.1.429	0.005459
ORF1ab/nsp13	413	T413I	aCt	aTt	184	184	AY.25	0.001107
ORF1ab/nsp13	413	T413I	aCt	aTt	180	180	AY.3	0.00179
ORF1ab/nsp13	413	T413A	Act	Gct	163	164	All	0.000031
ORF1ab/nsp13	413	T413A	AcT	GcC	1	164	All	0
ORF1ab/nsp13	413	T413I	aCt	aTt	150	150	B.1.617.2	0.000565
ORF1ab/nsp13	413	T413I	aCt	aTt	136	136	AY.43	0.000603
ORF1ab/nsp13	413	T413A	Act	Gct	115	115	B.1.160	0.003587
ORF1ab/nsp13	413	T413I	aCt	aTt	80	80	B.1.2	0.000704
ORF1ab/nsp13	413	T413I	aCt	aTt	76	76	B.1.1.231	0.235294
ORF1ab/nsp13	413	T413I	aCt	aTt	70	70	AY.20	0.002721
ORF1ab/nsp13	413	T413I	aCt	aTt	64	64	B.1	0.000586
ORF1ab/nsp13	413	T413I	aCt	aTt	62	62	B.1.1.317	0.025525
ORF1ab/nsp13	413	T413T	acT	acG	52	62	B.1.617.2	0.000196
ORF1ab/nsp13	413	T413T	acT	acC	10	62	B.1.617.2	0.000038
ORF1ab/nsp13	413	T413I	aCt	aTt	60	60	P.1	0.000945
ORF1ab/nsp13	413	T413N	aCt	aAt	59	59	All	0.000011
ORF1ab/nsp13	413	T413I	aCt	aTt	51	51	B.1.177	0.000672
ORF1ab/nsp13	413	T413I	aCt	aTt	50	50	B.1.416	0.063452
ORF1ab/nsp13	413	T413I	aCt	aTt	41	41	AY.44	0.00025
ORF1ab/nsp13	413	T413I	aCt	aTt	41	41	AY.5	0.000847
ORF1ab/nsp13	413	T413T	acT	acG	40	40	AY.75	0.002241
ORF1ab/nsp13	413	T413I	aCt	aTt	37	37	B.1.1	0.000671
ORF1ab/nsp13	413	T413I	aCt	aTt	34	34	B.1.36	0.004961
ORF1ab/nsp13	413	T413I	aCt	aTt	31	31	AY.103	0.000192
ORF1ab/nsp13	413	T413T	acT	acC	27	31	B.1.1.7	0.000024
ORF1ab/nsp13	413	T413T	acT	acG	2	31	B.1.1.7	0.000002
ORF1ab/nsp13	413	T413T	acT	acA	2	31	B.1.1.7	0.000002
ORF1ab/nsp13	413	T413I	aCt	aTt	30	30	P.1.14	0.001434
ORF1ab/nsp13	413	T413N	aCt	aAt	28	28	AY.43	0.000124
ORF1ab/nsp13	413	T413I	aCt	aTt	28	28	B.1.438.1	0.003003
ORF1ab/nsp13	413	T413I	aCt	aTt	26	26	AY.102	0.000689
ORF1ab/nsp13	413	T413I	aCt	aTt	26	26	AY.3.1	0.002217
ORF1ab/nsp13	413	T413I	aCt	aTt	25	25	AY.67	0.011606
ORF1ab/nsp13	413	T413I	aCt	aTt	24	24	B.1.351	0.000713
ORF1ab/nsp13	413	T413T	acT	acA	22	22	AY.4.2	0.000477
ORF1ab/nsp13	413	T413I	aCt	aTt	21	21	B.1.1.348	0.01672
ORF1ab/nsp13	413	T413del	ACT	---	20	20	All	0.000004
ORF1ab/nsp13	413	T413I	aCt	aTt	20	20	AY.119	0.000706
ORF1ab/nsp13	413	T413A	Act	Gct	20	20	B.1.139	0.014663
ORF1ab/nsp13	413	T413I	aCt	aTt	19	19	B.1.427	0.000959
ORF1ab/nsp13	413	T413I	aCt	aTt	17	17	AY.26	0.000481
ORF1ab/nsp13	413	T413I	aCt	aTt	17	17	B.1.1.222	0.003468
ORF1ab/nsp13	413	T413I	aCt	aTt	16	16	B.1.160	0.000499
ORF1ab/nsp13	413	T413I	aCt	aTt	15	15	B.1.1.216	0.013357
ORF1ab/nsp13	413	T413I	aCt	aTt	14	14	B.1.1.220	0.026022
ORF1ab/nsp13	413	T413A	Act	Gct	14	14	B.1.1.7	0.000013
ORF1ab/nsp13	413	T413I	aCt	aTt	14	14	B.1.525	0.001584
ORF1ab/nsp13	413	T413I	aCt	aTt	14	14	P.1.7	0.00447
ORF1ab/nsp13	413	T413I	aCt	aTt	12	12	AY.23	0.000837
ORF1ab/nsp13	413	T413I	aCt	aTt	12	12	C.37	0.001393
ORF1ab/nsp13	413	T413I	aCt	aTt	12	12	Q.8	0.001979
ORF1ab/nsp13	413	T413I	aCt	aTt	11	11	AY.120	0.000409
ORF1ab/nsp13	413	T413I	aCt	aTt	11	11	AY.29	0.000174
ORF1ab/nsp13	413	T413N	aCt	aAt	11	11	AY.44	0.000067
ORF1ab/nsp13	413	T413I	aCt	aTt	11	11	B.1.177.16	0.007309
ORF1ab/nsp13	413	T413I	aCt	aTt	11	11	B.1.576	0.009973
ORF1ab/nsp13	413	T413I	aCt	aTt	10	10	AY.118	0.000626
ORF1ab/nsp13	413	T413I	aCt	aTt	10	10	AY.27	0.000647
ORF1ab/nsp13	413	T413I	aCt	aTt	10	10	AY.42	0.000402
ORF1ab/nsp13	413	T413I	aCt	aTt	10	10	B.1.428	0.010204
ORF1ab/nsp13	413	T413I	aCt	aTt	9	9	AY.9.2	0.000331
ORF1ab/nsp13	413	T413I	aCt	aTt	9	9	B.1.110.3	0.006466
ORF1ab/nsp13	413	T413I	aCt	aTt	9	9	B.1.526	0.000212
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	AY.113	0.001139
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	AY.117	0.000676
ORF1ab/nsp13	413	T413T	acT	acC	6	8	AY.4	0.000009
ORF1ab/nsp13	413	T413T	acT	acA	1	8	AY.4	0.000002
ORF1ab/nsp13	413	T413T	acT	acG	1	8	AY.4	0.000002
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	AY.46	0.000833
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	AY.73	0.005323
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	B.1.1.28	0.00249
ORF1ab/nsp13	413	T413del	ACT	---	8	8	B.1.1.7	0.000007
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	B.1.221	0.000568
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	B.1.232	0.004299
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	B.1.311	0.002197
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	B.1.599	0.029197
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	C.1.1	0.615385
ORF1ab/nsp13	413	T413I	aCt	aTt	8	8	P.2	0.001493
ORF1ab/nsp13	413	T413I	aCt	aTt	7	7	AY.39	0.000173
ORF1ab/nsp13	413	T413I	aCt	aTt	7	7	B.1.1.519	0.000278
ORF1ab/nsp13	413	T413I	aCt	aTt	7	7	B.1.243	0.000487
ORF1ab/nsp13	413	T413I	aCt	aTt	7	7	B.1.596	0.00061
ORF1ab/nsp13	413	T413I	aCt	aTt	7	7	B.1.638	0.368421
ORF1ab/nsp13	413	T413I	aCt	aTt	6	6	AY.116	0.001721
ORF1ab/nsp13	413	T413T	acT	acC	6	6	AY.39	0.000148
ORF1ab/nsp13	413	T413I	aCt	aTt	6	6	AY.46.6	0.000433
ORF1ab/nsp13	413	T413I	aCt	aTt	6	6	AY.47	0.000187
ORF1ab/nsp13	413	T413I	aCt	aTt	6	6	B.1.1.214	0.000333
ORF1ab/nsp13	413	T413N	aCt	aAt	6	6	B.1.1.7	0.000005
ORF1ab/nsp13	413	T413T	acT	acC	4	6	B.1.177	0.000053
ORF1ab/nsp13	413	T413T	acT	acA	2	6	B.1.177	0.000026
ORF1ab/nsp13	413	T413I	aCt	aTt	6	6	B.1.621	0.000531
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	A.23.1	0.003521
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	AY.116.1	0.001557
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	AY.5.3	0.001687
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	AY.68	0.001369
ORF1ab/nsp13	413	T413T	acT	acC	5	5	AY.89	0.02451
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	B.1.1.176	0.002197
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	B.1.160.16	0.004647
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	B.1.389	0.00501
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	B.1.617.1	0.000645
ORF1ab/nsp13	413	T413I	aCt	aTt	5	5	Q.3	0.000725
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	AY.36	0.000593
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	AY.66	0.004278
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	AY.7.2	0.002237
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	AY.75.1	0.000721
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	AY.9.1	0.000335
ORF1ab/nsp13	413	T413T	acT	acC	3	4	B.1	0.000027
ORF1ab/nsp13	413	T413T	acT	acG	1	4	B.1	0.000009
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	B.1.258	0.000266
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	B.1.369	0.001141
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	B.1.470	0.005618
ORF1ab/nsp13	413	T413I	aCt	aTt	4	4	B.1.637	0.000292
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	A.1	0.000846
ORF1ab/nsp13	413	T413del1	AcT	Gc-	2	3	All	0
ORF1ab/nsp13	413	T413del1	acT	ac-	1	3	All	0
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	AY.14	0.000264
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	AY.24	0.001293
ORF1ab/nsp13	413	T413T	acT	acC	3	3	AY.3	0.00003
ORF1ab/nsp13	413	T413N	aCt	aAt	3	3	AY.4.2	0.000065
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	AY.57	0.001969
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	AY.6	0.000123
ORF1ab/nsp13	413	T413N	aCt	aAt	3	3	B.1	0.000027
ORF1ab/nsp13	413	T413T	acT	acC	2	3	B.1.1	0.000036
ORF1ab/nsp13	413	T413T	acT	acG	1	3	B.1.1	0.000018
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	B.1.1.464	0.004418
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	B.1.177.60	0.000655
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	B.1.214.2	0.001799
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	B.1.234	0.000396
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	B.1.351.2	0.000908
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	B.1.497	0.000944
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	B.1.595	0.000783
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	P.1.12	0.001452
ORF1ab/nsp13	413	T413I	aCt	aTt	3	3	P.1.15	0.000697
ORF1ab/nsp13	413	T413T	acT	acG	2	2		0.111111
ORF1ab/nsp13	413	T413G	ACT	GGA	2	2		0.111111
ORF1ab/nsp13	413	T413F	ACT	TTC	2	2		0.111111
ORF1ab/nsp13	413	T413del	ACT	---	2	2		0.111111
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	A	0.000774
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	A.2.5	0.000998
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AD.2	0.000438
ORF1ab/nsp13	413	T413G	ACT	GGA	2	2	All	0
ORF1ab/nsp13	413	T413F	ACT	TTC	2	2	All	0
ORF1ab/nsp13	413	T413K	aCT	aAG	1	2	All	0
ORF1ab/nsp13	413	T413K	aCT	aAA	1	2	All	0
ORF1ab/nsp13	413	T413del2	aCT	a--	1	2	All	0
ORF1ab/nsp13	413	T413del2	ACt	--t	1	2	All	0
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.1	0.000791
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.101	0.000981
ORF1ab/nsp13	413	T413A	Act	Gct	2	2	AY.103	0.000012
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.110	0.000225
ORF1ab/nsp13	413	T413N	aCt	aAt	2	2	AY.39	0.000049
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.39.1	0.000079
ORF1ab/nsp13	413	T413A	Act	Gct	1	2	AY.43	0.000004
ORF1ab/nsp13	413	T413A	AcT	GcC	1	2	AY.43	0.000004
ORF1ab/nsp13	413	T413T	acT	acA	1	2	AY.43	0.000004
ORF1ab/nsp13	413	T413T	acT	acC	1	2	AY.43	0.000004
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.45	0.000243
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.46.2	0.001271
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.46.4	0.000329
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.54	0.000191
ORF1ab/nsp13	413	T413T	acT	acA	2	2	AY.54	0.000191
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.55	0.001835
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.61	0.00021
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.70	0.000417
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.75	0.000112
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	AY.92	0.000575
ORF1ab/nsp13	413	T413A	Act	Gct	2	2	B.1	0.000018
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.1.194	0.009901
ORF1ab/nsp13	413	T413T	acT	acC	1	2	B.1.1.28	0.000311
ORF1ab/nsp13	413	T413T	acT	acG	1	2	B.1.1.28	0.000311
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.1.306	0.000877
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.1.318	0.000604
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.1.39	0.001019
ORF1ab/nsp13	413	T413N	aCt	aAt	2	2	B.1.160	0.000062
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.177.21	0.000153
ORF1ab/nsp13	413	T413A	Act	Gct	2	2	B.1.2	0.000018
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.214	0.007326
ORF1ab/nsp13	413	T413T	acT	acC	2	2	B.1.258	0.000133
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.336	0.004878
ORF1ab/nsp13	413	T413T	acT	acC	2	2	B.1.351	0.000059
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	B.1.469	0.00722
ORF1ab/nsp13	413	T413del	ACT	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp13	413	T413I	aCt	aTt	2	2	P.7	0.008734
ORF1ab/nsp13	413	T413T	acT	acC	1	1	A.1	0.000282
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	A.16	0.016129
ORF1ab/nsp13	413	T413del	ACT	---	1	1	AD.2	0.000219
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AH.2	0.012048
ORF1ab/nsp13	413	T413D	ACT	GAC	1	1	All	0
ORF1ab/nsp13	413	T413P	Act	Cct	1	1	All	0
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.100	0.000046
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.100	0.000046
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.102	0.000027
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.103	0.000006
ORF1ab/nsp13	413	T413N	aCt	aAt	1	1	AY.103	0.000006
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.105	0.000643
ORF1ab/nsp13	413	T413N	aCt	aAt	1	1	AY.111	0.000183
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.121	0.000135
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.15	0.002222
ORF1ab/nsp13	413	T413del	ACT	---	1	1	AY.23	0.00007
ORF1ab/nsp13	413	T413A	Act	Gct	1	1	AY.25	0.000006
ORF1ab/nsp13	413	T413T	acT	acA	1	1	AY.29	0.000016
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.33	0.000067
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.34	0.000097
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.35	0.000233
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.36	0.000148
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.37	0.000316
ORF1ab/nsp13	413	T413A	Act	Gct	1	1	AY.4	0.000002
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.4.2	0.000022
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.4.5	0.000107
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.41	0.000294
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.42	0.00004
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.44	0.000006
ORF1ab/nsp13	413	T413N	aCt	aAt	1	1	AY.45	0.000122
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.46.5	0.000198
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.5.4	0.000277
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.52	0.000814
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.53	0.000288
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.59	0.00053
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.60	0.000938
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.62	0.000436
ORF1ab/nsp13	413	T413del	ACT	---	1	1	AY.67	0.000464
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.69	0.000187
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.71	0.000475
ORF1ab/nsp13	413	T413T	acT	acG	1	1	AY.75.1	0.00018
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.88	0.000884
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.9	0.000068
ORF1ab/nsp13	413	T413T	acT	acC	1	1	AY.9	0.000068
ORF1ab/nsp13	413	T413del2	aCT	a--	1	1	AY.9.2	0.000037
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.93	0.000273
ORF1ab/nsp13	413	T413T	acT	acG	1	1	AY.98.1	0.000048
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	AY.98.1	0.000048
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B	0.000128
ORF1ab/nsp13	413	T413K	aCT	aAG	1	1	B.1	0.000009
ORF1ab/nsp13	413	T413A	Act	Gct	1	1	B.1.1	0.000018
ORF1ab/nsp13	413	T413A	Act	Gct	1	1	B.1.1.1	0.000327
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp13	413	T413T	acT	acC	1	1	B.1.1.141	0.002012
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.157	0.000913
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.198	0.001468
ORF1ab/nsp13	413	T413A	Act	Gct	1	1	B.1.1.214	0.000055
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.228	0.003049
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.241	0.00207
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.263	0.001558
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.277	0.000759
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.279	0.001121
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.294	0.001266
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.301	0.001179
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.33	0.000421
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.351	0.002793
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.371	0.010417
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.412	0.007634
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.432	0.001266
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.47	0.005348
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.50	0.000679
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.500	0.02
ORF1ab/nsp13	413	T413P	Act	Cct	1	1	B.1.1.7	0.000001
ORF1ab/nsp13	413	T413D	ACT	GAC	1	1	B.1.1.7	0.000001
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.1.70	0.000341
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.111	0.001175
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.157	0.002985
ORF1ab/nsp13	413	T413T	acT	acA	1	1	B.1.160	0.000031
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.160.14	0.002119
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.160.20	0.008929
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.160.29	0.004219
ORF1ab/nsp13	413	T413A	Act	Gct	1	1	B.1.177	0.000013
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.15	0.000631
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.4	0.000211
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.43	0.001477
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.57	0.000281
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.7	0.000165
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.75	0.001041
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.81	0.000189
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.177.86	0.000183
ORF1ab/nsp13	413	T413del	ACT	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp13	413	T413del	ACT	---	1	1	B.1.179	0.003759
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.189	0.004292
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.195	0.005025
ORF1ab/nsp13	413	T413T	acT	acC	1	1	B.1.2	0.000009
ORF1ab/nsp13	413	T413del1	acT	ac-	1	1	B.1.2	0.000009
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.236	0.002053
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.240	0.000216
ORF1ab/nsp13	413	T413T	acT	acC	1	1	B.1.243	0.00007
ORF1ab/nsp13	413	T413del1	AcT	Gc-	1	1	B.1.258	0.000067
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.306	0.005714
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.349	0.000715
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.351.3	0.000876
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.356	0.001727
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.36.1	0.00114
ORF1ab/nsp13	413	T413T	acT	acG	1	1	B.1.36.17	0.000494
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.36.18	0.00042
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.400	0.000429
ORF1ab/nsp13	413	T413del	ACT	---	1	1	B.1.415	0.014286
ORF1ab/nsp13	413	T413A	Act	Gct	1	1	B.1.429	0.000024
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.499.1	0.111111
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.527	0.003704
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.558	0.004566
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.575	0.000303
ORF1ab/nsp13	413	T413del	ACT	---	1	1	B.1.577	0.000687
ORF1ab/nsp13	413	T413del2	ACt	--t	1	1	B.1.617.2	0.000004
ORF1ab/nsp13	413	T413del1	AcT	Gc-	1	1	B.1.617.2	0.000004
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.619.1	0.000641
ORF1ab/nsp13	413	T413T	acT	acC	1	1	B.1.621	0.000089
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.623	0.000536
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.1.628	0.000352
ORF1ab/nsp13	413	T413del	ACT	---	1	1	B.1.630	0.005236
ORF1ab/nsp13	413	T413T	acT	acC	1	1	B.1.78	0.008547
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.28	0.003279
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	B.6.6	0.000889
ORF1ab/nsp13	413	T413N	aCt	aAt	1	1	C.37	0.000116
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	P.1.8	0.004785
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	Q.1	0.000126
ORF1ab/nsp13	413	T413K	aCT	aAA	1	1	Q.8	0.000165
ORF1ab/nsp13	413	T413I	aCt	aTt	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.