CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 402

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13402P402PP5726PsynccTccC245521260.86598817440-17442
ORF1ab/nsp13402P402PP5726PsynccTccA24552080.084725117440-17442
ORF1ab/nsp13402P402PP5726PsynccTccG24551210.049287217440-17442
ORF1ab/nsp13402P402SP5726SnonsynCctTct156715610.99617117440-17442
ORF1ab/nsp13402P402SP5726SnonsynCCtAGt156730.0019144917440-17442
ORF1ab/nsp13402P402SP5726SnonsynCcTTcA156730.0019144917440-17442
ORF1ab/nsp13402P402LP5726LnonsyncCtcTt1391220.87769817440-17442
ORF1ab/nsp13402P402LP5726LnonsynCCTTTA139150.10791417440-17442
ORF1ab/nsp13402P402LP5726LnonsyncCTcTA13920.014388517440-17442
ORF1ab/nsp13402P402FP5726FnonsynCCtTTt6767117440-17442
ORF1ab/nsp13402P402YP5726YnonsynCCtTAt3737117440-17442
ORF1ab/nsp13402P402HP5726HnonsyncCtcAt3131117440-17442
ORF1ab/nsp13402P402IP5726InonsynCCtATt29160.55172417440-17442
ORF1ab/nsp13402P402IP5726InonsynCCTATA29130.44827617440-17442
ORF1ab/nsp13402P402NP5726NnonsynCCtAAt2020117440-17442
ORF1ab/nsp13402P402TP5726TnonsynCctAct19170.89473717440-17442
ORF1ab/nsp13402P402TP5726TnonsynCcTAcC1910.052631617440-17442
ORF1ab/nsp13402P402TP5726TnonsynCcTAcA1910.052631617440-17442
ORF1ab/nsp13402P402XP5726XnonsynCCTTAA1717117440-17442
ORF1ab/nsp13402P402KP5726KnonsynCCTAAA1212117440-17442
ORF1ab/nsp13402P402delP5726deldelCCT---66117440-17442
ORF1ab/nsp13402P402QP5726QnonsyncCTcAA44117440-17442
ORF1ab/nsp13402P402AP5726AnonsynCctGct22117440-17442
ORF1ab/nsp13402P402CP5726CnonsynCCtTGt22117440-17442
ORF1ab/nsp13402P402del2P5726del2delcCTc--11117440-17442
ORF1ab/nsp13402P402RP5726RnonsyncCtcGt11117440-17442

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13402P402PccTccC21262455All0.000407
ORF1ab/nsp13402P402PccTccA2082455All0.00004
ORF1ab/nsp13402P402PccTccG1212455All0.000023
ORF1ab/nsp13402P402SCctTct15611567All0.000299
ORF1ab/nsp13402P402SCcTTcA31567All0.000001
ORF1ab/nsp13402P402SCCtAGt31567All0.000001
ORF1ab/nsp13402P402PccTccC14441444AY.290.022777
ORF1ab/nsp13402P402SCctTct454459B.1.1.70.000406
ORF1ab/nsp13402P402SCcTTcA3459B.1.1.70.000003
ORF1ab/nsp13402P402SCCtAGt2459B.1.1.70.000002
ORF1ab/nsp13402P402SCctTct349349B.1.1600.010884
ORF1ab/nsp13402P402PccTccC122255B.1.1.70.000109
ORF1ab/nsp13402P402PccTccG107255B.1.1.70.000096
ORF1ab/nsp13402P402PccTccA26255B.1.1.70.000023
ORF1ab/nsp13402P402SCctTct220220B.1.160.240.973451
ORF1ab/nsp13402P402PccTccC211211AY.1170.017833
ORF1ab/nsp13402P402LcCtcTt122139All0.000023
ORF1ab/nsp13402P402LCCTTTA15139All0.000003
ORF1ab/nsp13402P402LcCTcTA2139All0
ORF1ab/nsp13402P402PccTccC103103AY.98.10.004988
ORF1ab/nsp13402P402FCCtTTt6767All0.000013
ORF1ab/nsp13402P402SCctTct6767B.1.1770.000882
ORF1ab/nsp13402P402PccTccA6666B.1.1.700.02251
ORF1ab/nsp13402P402LcCtcTt4761B.1.1.70.000042
ORF1ab/nsp13402P402LCCTTTA1361B.1.1.70.000012
ORF1ab/nsp13402P402LcCTcTA161B.1.1.70.000001
ORF1ab/nsp13402P402PccTccA3449B.1.617.20.000128
ORF1ab/nsp13402P402PccTccC1549B.1.617.20.000056
ORF1ab/nsp13402P402SCctTct4646B.1.20.000405
ORF1ab/nsp13402P402SCctTct4242B.10.000385
ORF1ab/nsp13402P402SCctTct3838P.50.520548
ORF1ab/nsp13402P402YCCtTAt3737All0.000007
ORF1ab/nsp13402P402PccTccA1734AY.40.000026
ORF1ab/nsp13402P402PccTccC1634AY.40.000025
ORF1ab/nsp13402P402PccTccG134AY.40.000002
ORF1ab/nsp13402P402FCCtTTt3434B.1.1.70.00003
ORF1ab/nsp13402P402YCCtTAt3232B.1.1.70.000029
ORF1ab/nsp13402P402PccTccC3232B.1.177.720.108475
ORF1ab/nsp13402P402HcCtcAt3131All0.000006
ORF1ab/nsp13402P402ICCtATt1629All0.000003
ORF1ab/nsp13402P402ICCTATA1329All0.000002
ORF1ab/nsp13402P402PccTccC2428AY.250.000144
ORF1ab/nsp13402P402PccTccA428AY.250.000024
ORF1ab/nsp13402P402ICCtATt1325B.1.1.70.000012
ORF1ab/nsp13402P402ICCTATA1225B.1.1.70.000011
ORF1ab/nsp13402P402SCctTct2424B.1.2580.001597
ORF1ab/nsp13402P402PccTccC1423AY.30.000139
ORF1ab/nsp13402P402PccTccG923AY.30.00009
ORF1ab/nsp13402P402HcCtcAt2121B.1.1.70.000019
ORF1ab/nsp13402P402NCCtAAt2020All0.000004
ORF1ab/nsp13402P402TCctAct1719All0.000003
ORF1ab/nsp13402P402TCcTAcA119All0
ORF1ab/nsp13402P402TCcTAcC119All0
ORF1ab/nsp13402P402SCctTct1919B.1.177.770.013798
ORF1ab/nsp13402P402SCctTct1818B.1.10.000327
ORF1ab/nsp13402P402XCCTTAA1717All0.000003
ORF1ab/nsp13402P402PccTccC1717AY.29.10.003749
ORF1ab/nsp13402P402SCctTct1717AY.40.000026
ORF1ab/nsp13402P402NCCtAAt1616B.1.1.70.000014
ORF1ab/nsp13402P402PccTccC1515AY.1180.00094
ORF1ab/nsp13402P402SCctTct1415P.10.000221
ORF1ab/nsp13402P402SCCtAGt115P.10.000016
ORF1ab/nsp13402P402XCCTTAA1414B.1.1.70.000013
ORF1ab/nsp13402P402PccTccC1113AY.1030.000068
ORF1ab/nsp13402P402PccTccG113AY.1030.000006
ORF1ab/nsp13402P402PccTccA113AY.1030.000006
ORF1ab/nsp13402P402KCCTAAA1212All0.000002
ORF1ab/nsp13402P402PccTccC1212AY.1110.002198
ORF1ab/nsp13402P402SCctTct1212AY.250.000072
ORF1ab/nsp13402P402PccTccA1011AY.440.000061
ORF1ab/nsp13402P402PccTccC111AY.440.000006
ORF1ab/nsp13402P402KCCTAAA1111B.1.1.70.00001
ORF1ab/nsp13402P402PccTccC1011B.1.20.000088
ORF1ab/nsp13402P402PccTccA111B.1.20.000009
ORF1ab/nsp13402P402PccTccC710B.1.10.000127
ORF1ab/nsp13402P402PccTccA310B.1.10.000054
ORF1ab/nsp13402P402SCctTct99AY.60.00037
ORF1ab/nsp13402P402TCctAct89B.1.1.70.000007
ORF1ab/nsp13402P402TCcTAcA19B.1.1.70.000001
ORF1ab/nsp13402P402PccTccA68B.1.1770.000079
ORF1ab/nsp13402P402PccTccC28B.1.1770.000026
ORF1ab/nsp13402P402SCctTct88B.1.617.20.00003
ORF1ab/nsp13402P402PccTccC77AY.430.000031
ORF1ab/nsp13402P402LcCtcTt77B.10.000064
ORF1ab/nsp13402P402PccTccC67B.10.000055
ORF1ab/nsp13402P402PccTccG17B.10.000009
ORF1ab/nsp13402P402SCctTct77D.20.000525
ORF1ab/nsp13402P402SCctTct66A0.002322
ORF1ab/nsp13402P402delCCT---66All0.000001
ORF1ab/nsp13402P402LcCtcTt66AY.1030.000037
ORF1ab/nsp13402P402LcCtcTt66AY.40.000009
ORF1ab/nsp13402P402FCCtTTt66AY.40.000009
ORF1ab/nsp13402P402SCctTct66B.1.1.3050.023166
ORF1ab/nsp13402P402PccTccC66B.1.177.830.008889
ORF1ab/nsp13402P402SCctTct66B.1.2430.000418
ORF1ab/nsp13402P402SCctTct55AY.1030.000031
ORF1ab/nsp13402P402LcCtcTt55AY.1050.003215
ORF1ab/nsp13402P402PccTccA55AY.200.000194
ORF1ab/nsp13402P402SCctTct55B.1.3560.008636
ORF1ab/nsp13402P402PccTccA55B.1.5870.009488
ORF1ab/nsp13402P402LcCtcTt25P.10.000032
ORF1ab/nsp13402P402LCCTTTA25P.10.000032
ORF1ab/nsp13402P402LcCTcTA15P.10.000016
ORF1ab/nsp13402P402QcCTcAA44All0.000001
ORF1ab/nsp13402P402PccTccC44AY.120.10.001284
ORF1ab/nsp13402P402SCctTct44B.1.1.2140.000222
ORF1ab/nsp13402P402PccTccC24B.1.2400.000431
ORF1ab/nsp13402P402PccTccA24B.1.2400.000431
ORF1ab/nsp13402P402SCctTct44B.1.3670.00317
ORF1ab/nsp13402P402PccTccC44B.1.5260.000094
ORF1ab/nsp13402P402SCctTct44B.1.5610.001588
ORF1ab/nsp13402P402FCCtTTt44P.10.000063
ORF1ab/nsp13402P402SCctTct44Q.40.001819
ORF1ab/nsp13402P402SCctTct33A.270.004967
ORF1ab/nsp13402P402PccTccC33AY.1190.000106
ORF1ab/nsp13402P402LcCtcTt33AY.30.00003
ORF1ab/nsp13402P402SCctTct33AY.30.00003
ORF1ab/nsp13402P402SCctTct33AY.430.000013
ORF1ab/nsp13402P402SCctTct33AY.440.000018
ORF1ab/nsp13402P402PccTccA23AY.610.00021
ORF1ab/nsp13402P402PccTccC13AY.610.000105
ORF1ab/nsp13402P402PccTccC33AY.680.000821
ORF1ab/nsp13402P402FCCtTTt33B.1.1.250.001706
ORF1ab/nsp13402P402PccTccC33B.1.1.3160.002775
ORF1ab/nsp13402P402SCctTct33B.1.1.4340.001046
ORF1ab/nsp13402P402SCctTct33B.1.1.5190.000119
ORF1ab/nsp13402P402SCctTct33B.1.1.580.016129
ORF1ab/nsp13402P402QcCTcAA33B.1.1.70.000003
ORF1ab/nsp13402P402delCCT---33B.1.1.70.000003
ORF1ab/nsp13402P402SCctTct33B.1.130.007126
ORF1ab/nsp13402P402SCctTct33B.1.177.810.000568
ORF1ab/nsp13402P402SCctTct33B.1.177.860.00055
ORF1ab/nsp13402P402FCCtTTt33B.1.20.000026
ORF1ab/nsp13402P402SCctTct33B.1.2320.001612
ORF1ab/nsp13402P402SCctTct33B.1.2400.000647
ORF1ab/nsp13402P402PccTccC33B.1.5250.000339
ORF1ab/nsp13402P402SCctTct33B.1.5250.000339
ORF1ab/nsp13402P402LcCtcTt33B.1.5950.000783
ORF1ab/nsp13402P402SCctTct33B.1.6370.000219
ORF1ab/nsp13402P402FCCtTTt33C.360.002732
ORF1ab/nsp13402P402ICCtATt23P.10.000032
ORF1ab/nsp13402P402ICCTATA13P.10.000016
ORF1ab/nsp13402P402SCctTct33P.1.140.000143
ORF1ab/nsp13402P402SCctTct33Q.80.000495
ORF1ab/nsp13402P402SCctTct33R.10.00027
ORF1ab/nsp13402P402SCctTct22A.2.50.000998
ORF1ab/nsp13402P402CCCtTGt22All0
ORF1ab/nsp13402P402ACctGct22All0
ORF1ab/nsp13402P402PccTccC12AY.1000.000046
ORF1ab/nsp13402P402PccTccA12AY.1000.000046
ORF1ab/nsp13402P402SCctTct22AY.1050.001286
ORF1ab/nsp13402P402SCctTct22AY.200.000078
ORF1ab/nsp13402P402LcCtcTt22AY.250.000012
ORF1ab/nsp13402P402SCctTct22AY.3.10.000171
ORF1ab/nsp13402P402PccTccC22AY.4.10.001475
ORF1ab/nsp13402P402PccTccC22AY.420.00008
ORF1ab/nsp13402P402LcCtcTt22AY.440.000012
ORF1ab/nsp13402P402PccTccC22AY.50.000041
ORF1ab/nsp13402P402SCctTct22AY.50.000041
ORF1ab/nsp13402P402LcCtcTt22AY.640.00119
ORF1ab/nsp13402P402PccTccC22AY.880.001768
ORF1ab/nsp13402P402SCctTct22B0.000256
ORF1ab/nsp13402P402TCctAct22B.10.000018
ORF1ab/nsp13402P402FCCtTTt22B.1.10.000036
ORF1ab/nsp13402P402SCctTct22B.1.1.2160.001781
ORF1ab/nsp13402P402FCCtTTt22B.1.1.2190.01
ORF1ab/nsp13402P402SCctTct22B.1.1.3160.00185
ORF1ab/nsp13402P402ACctGct22B.1.1.70.000002
ORF1ab/nsp13402P402SCctTct22B.1.1530.037736
ORF1ab/nsp13402P402PccTccA22B.1.177.870.001456
ORF1ab/nsp13402P402SCctTct22B.1.2790.001027
ORF1ab/nsp13402P402SCctTct22B.1.3200.002491
ORF1ab/nsp13402P402SCctTct22B.1.36.100.009569
ORF1ab/nsp13402P402LcCtcTt22B.1.36.290.001035
ORF1ab/nsp13402P402SCctTct22B.1.4270.000101
ORF1ab/nsp13402P402SCctTct22B.1.5030.004975
ORF1ab/nsp13402P402SCctTct22B.1.5170.000854
ORF1ab/nsp13402P402SCctTct22B.1.5260.000047
ORF1ab/nsp13402P402SCctTct22B.1.617.10.000258
ORF1ab/nsp13402P402SCctTct22B.30.001661
ORF1ab/nsp13402P402SCctTct22B.4.50.02381
ORF1ab/nsp13402P402SCctTct22B.530.023529
ORF1ab/nsp13402P402SCctTct22C.160.002121
ORF1ab/nsp13402P402SCctTct22N.60.014184
ORF1ab/nsp13402P402YCCtTAt22P.10.000032
ORF1ab/nsp13402P402XCCTTAA22P.10.000032
ORF1ab/nsp13402P402SCctTct22P.20.000373
ORF1ab/nsp13402P402PccTccA11A0.000387
ORF1ab/nsp13402P402SCctTct11A.20.000662
ORF1ab/nsp13402P402SCctTct11AD.20.000219
ORF1ab/nsp13402P402SCctTct11AK.20.045455
ORF1ab/nsp13402P402del2cCTc--11All0
ORF1ab/nsp13402P402RcCtcGt11All0
ORF1ab/nsp13402P402SCctTct11AU.30.00211
ORF1ab/nsp13402P402LcCtcTt11AY.10.000396
ORF1ab/nsp13402P402HcCtcAt11AY.10.000396
ORF1ab/nsp13402P402SCctTct11AY.1000.000046
ORF1ab/nsp13402P402LcCtcTt11AY.1020.000027
ORF1ab/nsp13402P402SCctTct11AY.1020.000027
ORF1ab/nsp13402P402PccTccC11AY.1020.000027
ORF1ab/nsp13402P402TCctAct11AY.1130.000142
ORF1ab/nsp13402P402SCctTct11AY.1200.000037
ORF1ab/nsp13402P402SCctTct11AY.140.000088
ORF1ab/nsp13402P402PccTccA11AY.16.10.00047
ORF1ab/nsp13402P402FCCtTTt11AY.200.000039
ORF1ab/nsp13402P402PccTccA11AY.230.00007
ORF1ab/nsp13402P402delCCT---11AY.230.00007
ORF1ab/nsp13402P402HcCtcAt11AY.250.000006
ORF1ab/nsp13402P402FCCtTTt11AY.250.000006
ORF1ab/nsp13402P402PccTccA11AY.260.000028
ORF1ab/nsp13402P402LcCtcTt11AY.270.000065
ORF1ab/nsp13402P402HcCtcAt11AY.290.000016
ORF1ab/nsp13402P402LcCtcTt11AY.290.000016
ORF1ab/nsp13402P402SCctTct11AY.29.10.000221
ORF1ab/nsp13402P402LcCtcTt11AY.3.10.000085
ORF1ab/nsp13402P402PccTccA11AY.3.10.000085
ORF1ab/nsp13402P402PccTccC11AY.320.000532
ORF1ab/nsp13402P402SCctTct11AY.330.000067
ORF1ab/nsp13402P402SCctTct11AY.340.000097
ORF1ab/nsp13402P402PccTccA11AY.350.000233
ORF1ab/nsp13402P402SCctTct11AY.350.000233
ORF1ab/nsp13402P402PccTccC11AY.360.000148
ORF1ab/nsp13402P402SCctTct11AY.390.000025
ORF1ab/nsp13402P402LcCtcTt11AY.390.000025
ORF1ab/nsp13402P402PccTccC11AY.390.000025
ORF1ab/nsp13402P402PccTccC11AY.39.10.00004
ORF1ab/nsp13402P402SCctTct11AY.39.1.10.000725
ORF1ab/nsp13402P402HcCtcAt11AY.40.000002
ORF1ab/nsp13402P402LcCtcTt11AY.4.10.000737
ORF1ab/nsp13402P402LcCtcTt11AY.4.20.000022
ORF1ab/nsp13402P402SCctTct11AY.4.20.000022
ORF1ab/nsp13402P402PccTccC11AY.4.20.000022
ORF1ab/nsp13402P402HcCtcAt11AY.430.000004
ORF1ab/nsp13402P402LcCtcTt11AY.430.000004
ORF1ab/nsp13402P402TCctAct11AY.430.000004
ORF1ab/nsp13402P402NCCtAAt11AY.430.000004
ORF1ab/nsp13402P402TCcTAcC11AY.440.000006
ORF1ab/nsp13402P402PccTccA11AY.470.000031
ORF1ab/nsp13402P402LcCtcTt11AY.470.000031
ORF1ab/nsp13402P402PccTccA11AY.510.000909
ORF1ab/nsp13402P402SCctTct11AY.540.000095
ORF1ab/nsp13402P402SCctTct11AY.570.000656
ORF1ab/nsp13402P402PccTccC11AY.60.000041
ORF1ab/nsp13402P402TCctAct11AY.60.000041
ORF1ab/nsp13402P402HcCtcAt11AY.700.000209
ORF1ab/nsp13402P402NCCtAAt11AY.700.000209
ORF1ab/nsp13402P402TCctAct11AY.700.000209
ORF1ab/nsp13402P402PccTccC11AY.740.000116
ORF1ab/nsp13402P402SCctTct11AY.750.000056
ORF1ab/nsp13402P402PccTccC11AY.760.004831
ORF1ab/nsp13402P402SCctTct11AY.760.004831
ORF1ab/nsp13402P402PccTccA11AY.790.001211
ORF1ab/nsp13402P402SCctTct11AY.900.000684
ORF1ab/nsp13402P402PccTccA11AY.950.000761
ORF1ab/nsp13402P402PccTccC11AY.980.000079
ORF1ab/nsp13402P402PccTccA11AY.99.20.000092
ORF1ab/nsp13402P402PccTccA11B0.000128
ORF1ab/nsp13402P402LcCtcTt11B0.000128
ORF1ab/nsp13402P402HcCtcAt11B.10.000009
ORF1ab/nsp13402P402FCCtTTt11B.10.000009
ORF1ab/nsp13402P402LcCtcTt11B.1.10.000018
ORF1ab/nsp13402P402ICCtATt11B.1.10.000018
ORF1ab/nsp13402P402TCctAct11B.1.10.000018
ORF1ab/nsp13402P402SCctTct11B.1.1.100.001115
ORF1ab/nsp13402P402LcCtcTt11B.1.1.1530.001095
ORF1ab/nsp13402P402SCctTct11B.1.1.1530.001095
ORF1ab/nsp13402P402SCctTct11B.1.1.1700.001247
ORF1ab/nsp13402P402SCctTct11B.1.1.2270.004348
ORF1ab/nsp13402P402SCctTct11B.1.1.2280.003049
ORF1ab/nsp13402P402LcCtcTt11B.1.1.2360.006897
ORF1ab/nsp13402P402SCctTct11B.1.1.250.000569
ORF1ab/nsp13402P402SCctTct11B.1.1.2610.008621
ORF1ab/nsp13402P402SCctTct11B.1.1.280.000311
ORF1ab/nsp13402P402LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp13402P402SCctTct11B.1.1.2980.000862
ORF1ab/nsp13402P402SCctTct11B.1.1.330.000421
ORF1ab/nsp13402P402FCCtTTt11B.1.1.3390.010526
ORF1ab/nsp13402P402PccTccA11B.1.1.3540.004386
ORF1ab/nsp13402P402SCctTct11B.1.1.370.000193
ORF1ab/nsp13402P402SCctTct11B.1.1.4020.011111
ORF1ab/nsp13402P402SCctTct11B.1.1.4090.002833
ORF1ab/nsp13402P402PccTccG11B.1.1.4340.000349
ORF1ab/nsp13402P402SCctTct11B.1.1.460.004367
ORF1ab/nsp13402P402PccTccG11B.1.1.5190.00004
ORF1ab/nsp13402P402YCCtTAt11B.1.1.5190.00004
ORF1ab/nsp13402P402HcCtcAt11B.1.1.5190.00004
ORF1ab/nsp13402P402SCctTct11B.1.1.5230.001563
ORF1ab/nsp13402P402CCCtTGt11B.1.1.70.000001
ORF1ab/nsp13402P402RcCtcGt11B.1.1.70.000001
ORF1ab/nsp13402P402del2cCTc--11B.1.1.70.000001
ORF1ab/nsp13402P402SCctTct11B.1.110.30.000718
ORF1ab/nsp13402P402SCctTct11B.1.1110.001175
ORF1ab/nsp13402P402SCctTct11B.1.1390.000733
ORF1ab/nsp13402P402LcCtcTt11B.1.1600.000031
ORF1ab/nsp13402P402SCctTct11B.1.160.300.002976
ORF1ab/nsp13402P402SCctTct11B.1.1650.011905
ORF1ab/nsp13402P402LcCtcTt11B.1.1770.000013
ORF1ab/nsp13402P402SCctTct11B.1.177.200.001517
ORF1ab/nsp13402P402SCctTct11B.1.177.230.003236
ORF1ab/nsp13402P402SCctTct11B.1.177.480.003125
ORF1ab/nsp13402P402LcCtcTt11B.1.177.50.001242
ORF1ab/nsp13402P402SCctTct11B.1.177.530.002392
ORF1ab/nsp13402P402SCctTct11B.1.177.540.000606
ORF1ab/nsp13402P402PccTccC11B.1.177.580.001332
ORF1ab/nsp13402P402PccTccA11B.1.177.600.000218
ORF1ab/nsp13402P402PccTccA11B.1.177.730.000566
ORF1ab/nsp13402P402PccTccA11B.1.177.80.000752
ORF1ab/nsp13402P402NCCtAAt11B.1.20.000009
ORF1ab/nsp13402P402TCctAct11B.1.20.000009
ORF1ab/nsp13402P402HcCtcAt11B.1.20.000009
ORF1ab/nsp13402P402LcCtcTt11B.1.20.000009
ORF1ab/nsp13402P402YCCtTAt11B.1.20.000009
ORF1ab/nsp13402P402SCctTct11B.1.2180.005155
ORF1ab/nsp13402P402LcCtcTt11B.1.2340.000132
ORF1ab/nsp13402P402PccTccC11B.1.2390.001221
ORF1ab/nsp13402P402LcCtcTt11B.1.2430.00007
ORF1ab/nsp13402P402PccTccC11B.1.2430.00007
ORF1ab/nsp13402P402PccTccC11B.1.2580.000067
ORF1ab/nsp13402P402LcCtcTt11B.1.2580.000067
ORF1ab/nsp13402P402SCctTct11B.1.258.110.000396
ORF1ab/nsp13402P402SCctTct11B.1.2600.003344
ORF1ab/nsp13402P402PccTccA11B.1.3490.000715
ORF1ab/nsp13402P402SCctTct11B.1.3510.00003
ORF1ab/nsp13402P402PccTccA11B.1.3510.00003
ORF1ab/nsp13402P402SCctTct11B.1.360.000146
ORF1ab/nsp13402P402FCCtTTt11B.1.36.260.002857
ORF1ab/nsp13402P402LcCtcTt11B.1.36.260.002857
ORF1ab/nsp13402P402SCctTct11B.1.36.360.000602
ORF1ab/nsp13402P402PccTccC11B.1.36.70.004
ORF1ab/nsp13402P402PccTccC11B.1.36.80.001
ORF1ab/nsp13402P402TCctAct11B.1.3910.001127
ORF1ab/nsp13402P402SCctTct11B.1.3980.002976
ORF1ab/nsp13402P402SCctTct11B.1.4030.003268
ORF1ab/nsp13402P402SCctTct11B.1.4040.001302
ORF1ab/nsp13402P402PccTccA11B.1.4270.00005
ORF1ab/nsp13402P402LcCtcTt11B.1.4270.00005
ORF1ab/nsp13402P402LcCtcTt11B.1.4290.000024
ORF1ab/nsp13402P402FCCtTTt11B.1.4290.000024
ORF1ab/nsp13402P402SCctTct11B.1.429.10.012048
ORF1ab/nsp13402P402SCctTct11B.1.438.10.000107
ORF1ab/nsp13402P402LcCtcTt11B.1.4390.005917
ORF1ab/nsp13402P402PccTccA11B.1.4410.009615
ORF1ab/nsp13402P402SCctTct11B.1.4480.002625
ORF1ab/nsp13402P402FCCtTTt11B.1.466.20.000391
ORF1ab/nsp13402P402SCctTct11B.1.4700.001404
ORF1ab/nsp13402P402LcCtcTt11B.1.4950.009091
ORF1ab/nsp13402P402SCctTct11B.1.499.10.111111
ORF1ab/nsp13402P402PccTccC11B.1.5090.000866
ORF1ab/nsp13402P402LcCtcTt11B.1.5250.000113
ORF1ab/nsp13402P402FCCtTTt11B.1.5260.000024
ORF1ab/nsp13402P402PccTccC11B.1.5610.000397
ORF1ab/nsp13402P402SCctTct11B.1.5640.000426
ORF1ab/nsp13402P402delCCT---11B.1.5770.000687
ORF1ab/nsp13402P402YCCtTAt11B.1.5770.000687
ORF1ab/nsp13402P402LcCtcTt11B.1.5890.007576
ORF1ab/nsp13402P402PccTccA11B.1.5950.000261
ORF1ab/nsp13402P402FCCtTTt11B.1.5960.000087
ORF1ab/nsp13402P402SCctTct11B.1.5960.000087
ORF1ab/nsp13402P402XCCTTAA11B.1.5960.000087
ORF1ab/nsp13402P402SCctTct11B.1.5970.00463
ORF1ab/nsp13402P402SCctTct11B.1.6090.000479
ORF1ab/nsp13402P402FCCtTTt11B.1.617.20.000004
ORF1ab/nsp13402P402delCCT---11B.1.617.20.000004
ORF1ab/nsp13402P402SCctTct11B.1.6210.000089
ORF1ab/nsp13402P402PccTccA11B.1.6210.000089
ORF1ab/nsp13402P402SCctTct11B.1.6230.000536
ORF1ab/nsp13402P402SCctTct11B.1.6310.003367
ORF1ab/nsp13402P402SCctTct11B.1.80.001972
ORF1ab/nsp13402P402SCctTct11B.1.840.020833
ORF1ab/nsp13402P402LcCtcTt11B.110.005128
ORF1ab/nsp13402P402SCctTct11B.4.70.010101
ORF1ab/nsp13402P402LcCtcTt11B.400.000364
ORF1ab/nsp13402P402SCctTct11B.400.000364
ORF1ab/nsp13402P402LcCtcTt11B.520.010101
ORF1ab/nsp13402P402SCctTct11B.610.005747
ORF1ab/nsp13402P402SCctTct11C.370.000116
ORF1ab/nsp13402P402LcCtcTt11D.20.000075
ORF1ab/nsp13402P402PccTccC11D.30.005917
ORF1ab/nsp13402P402SCctTct11D.50.004975
ORF1ab/nsp13402P402PccTccA11P.10.000016
ORF1ab/nsp13402P402QcCTcAA11P.10.000016
ORF1ab/nsp13402P402NCCtAAt11P.10.000016
ORF1ab/nsp13402P402HcCtcAt11P.10.000016
ORF1ab/nsp13402P402KCCTAAA11P.10.000016
ORF1ab/nsp13402P402CCCtTGt11P.10.000016
ORF1ab/nsp13402P402SCctTct11P.1.100.000269
ORF1ab/nsp13402P402LcCtcTt11P.1.140.000048
ORF1ab/nsp13402P402SCctTct11P.1.170.000162
ORF1ab/nsp13402P402LcCtcTt11P.30.001595
ORF1ab/nsp13402P402SCctTct11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.