CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 392

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13392R392CR5716CnonsynCgtTgt91059105117410-17412
ORF1ab/nsp13392R392LR5716LnonsyncGtcTt422422117410-17412
ORF1ab/nsp13392R392RR5716RsyncgTcgC3211720.53582617410-17412
ORF1ab/nsp13392R392RR5716RsyncgTcgA3211260.39252317410-17412
ORF1ab/nsp13392R392RR5716RsyncgTcgG321210.065420617410-17412
ORF1ab/nsp13392R392RR5716RsynCgTAgG32120.0062305317410-17412
ORF1ab/nsp13392R392HR5716HnonsyncGtcAt269269117410-17412
ORF1ab/nsp13392R392SR5716SnonsynCgtAgt4242117410-17412
ORF1ab/nsp13392R392GR5716GnonsynCgtGgt2828117410-17412
ORF1ab/nsp13392R392delR5716deldelCGT---99117410-17412
ORF1ab/nsp13392R392PR5716PnonsyncGtcCt970.77777817410-17412
ORF1ab/nsp13392R392PR5716PnonsyncGTcCG920.22222217410-17412
ORF1ab/nsp13392R392TR5716TnonsynCGtACt530.617410-17412
ORF1ab/nsp13392R392TR5716TnonsynCGTACG520.417410-17412
ORF1ab/nsp13392R392NR5716NnonsynCGtAAt22117410-17412
ORF1ab/nsp13392R392QR5716QnonsyncGTcAG22117410-17412
ORF1ab/nsp13392R392WR5716WnonsynCgTTgG11117410-17412
ORF1ab/nsp13392R392YR5716YnonsynCGtTAt11117410-17412
ORF1ab/nsp13392R392XR5716XnonsynCGTTAG11117410-17412
ORF1ab/nsp13392R392KR5716KnonsynCGTAAG11117410-17412
ORF1ab/nsp13392R392del1R5716del1delCgt-gt11117410-17412

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13392R392CCgtTgt91059105All0.001741
ORF1ab/nsp13392R392CCgtTgt23852385B.1.1.70.002135
ORF1ab/nsp13392R392CCgtTgt576576AY.40.000896
ORF1ab/nsp13392R392CCgtTgt566566B.1.4290.013317
ORF1ab/nsp13392R392LcGtcTt422422All0.000081
ORF1ab/nsp13392R392CCgtTgt412412B.1.617.20.001551
ORF1ab/nsp13392R392CCgtTgt374374AY.30.00372
ORF1ab/nsp13392R392RcgTcgC172321All0.000033
ORF1ab/nsp13392R392RcgTcgA126321All0.000024
ORF1ab/nsp13392R392RcgTcgG21321All0.000004
ORF1ab/nsp13392R392RCgTAgG2321All0
ORF1ab/nsp13392R392CCgtTgt279279B.1.20.002457
ORF1ab/nsp13392R392HcGtcAt269269All0.000051
ORF1ab/nsp13392R392CCgtTgt239239AY.430.001059
ORF1ab/nsp13392R392CCgtTgt203203AY.1200.007547
ORF1ab/nsp13392R392CCgtTgt195195B.111
ORF1ab/nsp13392R392CCgtTgt186186B.10.001704
ORF1ab/nsp13392R392CCgtTgt185185AY.440.001126
ORF1ab/nsp13392R392CCgtTgt167167AY.290.002634
ORF1ab/nsp13392R392CCgtTgt161161AY.560.258427
ORF1ab/nsp13392R392CCgtTgt145145B.1.1.5190.005758
ORF1ab/nsp13392R392RcgTcgA121131B.1.1.70.000108
ORF1ab/nsp13392R392RcgTcgC9131B.1.1.70.000008
ORF1ab/nsp13392R392RcgTcgG1131B.1.1.70.000001
ORF1ab/nsp13392R392CCgtTgt129129AY.260.003652
ORF1ab/nsp13392R392CCgtTgt127127AY.1020.003367
ORF1ab/nsp13392R392CCgtTgt121121AY.420.004868
ORF1ab/nsp13392R392CCgtTgt114114B.1.1770.001501
ORF1ab/nsp13392R392CCgtTgt107107P.10.001686
ORF1ab/nsp13392R392CCgtTgt9696B.1.360.014006
ORF1ab/nsp13392R392LcGtcTt9595B.1.1600.002963
ORF1ab/nsp13392R392CCgtTgt9393AY.360.013784
ORF1ab/nsp13392R392CCgtTgt8686B.1.10.00156
ORF1ab/nsp13392R392LcGtcTt8484AY.440.000511
ORF1ab/nsp13392R392CCgtTgt8282AY.1030.000509
ORF1ab/nsp13392R392CCgtTgt7474B.1.6210.00655
ORF1ab/nsp13392R392CCgtTgt7070B.1.4270.003535
ORF1ab/nsp13392R392CCgtTgt6868AY.250.000409
ORF1ab/nsp13392R392CCgtTgt6666AY.460.006869
ORF1ab/nsp13392R392RcgTcgC5757AY.430.000253
ORF1ab/nsp13392R392CCgtTgt5454AY.610.005658
ORF1ab/nsp13392R392LcGtcTt5353B.1.1.70.000047
ORF1ab/nsp13392R392CCgtTgt4949AY.470.001524
ORF1ab/nsp13392R392CCgtTgt4646B.1.160.310.370968
ORF1ab/nsp13392R392CCgtTgt4646B.1.5960.004008
ORF1ab/nsp13392R392CCgtTgt4545AY.390.001112
ORF1ab/nsp13392R392HcGtcAt4444AY.440.000268
ORF1ab/nsp13392R392CCgtTgt4343AY.39.10.001703
ORF1ab/nsp13392R392CCgtTgt4343AY.740.004973
ORF1ab/nsp13392R392SCgtAgt4242All0.000008
ORF1ab/nsp13392R392LcGtcTt4242AY.40.000065
ORF1ab/nsp13392R392RcgTcgC3939B.1.6230.020923
ORF1ab/nsp13392R392CCgtTgt3838B.1.1.450.535211
ORF1ab/nsp13392R392CCgtTgt3636B.1.2430.002505
ORF1ab/nsp13392R392CCgtTgt3636B.1.6090.017258
ORF1ab/nsp13392R392CCgtTgt3535B.1.5260.000823
ORF1ab/nsp13392R392CCgtTgt3131AY.46.40.0051
ORF1ab/nsp13392R392CCgtTgt3131AY.540.002956
ORF1ab/nsp13392R392CCgtTgt2929AY.50.000599
ORF1ab/nsp13392R392GCgtGgt2828All0.000005
ORF1ab/nsp13392R392CCgtTgt2828B.1.1.10.009147
ORF1ab/nsp13392R392CCgtTgt2727B.1.1600.000842
ORF1ab/nsp13392R392CCgtTgt2626AY.680.007117
ORF1ab/nsp13392R392CCgtTgt2626B.1.1.4130.17931
ORF1ab/nsp13392R392HcGtcAt2424AY.34.10.012239
ORF1ab/nsp13392R392CCgtTgt2424B.1.1.3220.210526
ORF1ab/nsp13392R392GCgtGgt2323AY.40.000036
ORF1ab/nsp13392R392HcGtcAt2222AY.40.000034
ORF1ab/nsp13392R392CCgtTgt2222B0.002812
ORF1ab/nsp13392R392HcGtcAt2222B.1.20.000194
ORF1ab/nsp13392R392CCgtTgt2121AY.3.10.00179
ORF1ab/nsp13392R392CCgtTgt2020B.1.1.2160.017809
ORF1ab/nsp13392R392CCgtTgt2020B.1.621.10.010116
ORF1ab/nsp13392R392CCgtTgt2020P.1.170.003235
ORF1ab/nsp13392R392CCgtTgt1919AY.230.001325
ORF1ab/nsp13392R392RcgTcgC1818AY.99.20.001659
ORF1ab/nsp13392R392CCgtTgt1818B.1.1.2050.066914
ORF1ab/nsp13392R392CCgtTgt1818B.1.5740.03871
ORF1ab/nsp13392R392HcGtcAt1818B.1.6200.017029
ORF1ab/nsp13392R392CCgtTgt1818C.370.002089
ORF1ab/nsp13392R392CCgtTgt1717AY.200.000661
ORF1ab/nsp13392R392CCgtTgt1717AY.9.20.000624
ORF1ab/nsp13392R392CCgtTgt1717B.1.2060.013866
ORF1ab/nsp13392R392CCgtTgt1717B.1.2580.001131
ORF1ab/nsp13392R392HcGtcAt1717B.1.5610.006749
ORF1ab/nsp13392R392CCgtTgt1616A.20.010589
ORF1ab/nsp13392R392CCgtTgt1616AD.20.003503
ORF1ab/nsp13392R392CCgtTgt1616AY.1060.005358
ORF1ab/nsp13392R392CCgtTgt1616B.1.1.390.008155
ORF1ab/nsp13392R392CCgtTgt1616B.1.6370.001169
ORF1ab/nsp13392R392CCgtTgt1515AY.1000.00069
ORF1ab/nsp13392R392LcGtcTt1515AY.50.00031
ORF1ab/nsp13392R392RcgTcgG1415B.1.1600.000437
ORF1ab/nsp13392R392RcgTcgC115B.1.1600.000031
ORF1ab/nsp13392R392CCgtTgt1515B.1.177.40.003166
ORF1ab/nsp13392R392CCgtTgt1515B.1.258.70.028681
ORF1ab/nsp13392R392CCgtTgt1414AY.4.20.000304
ORF1ab/nsp13392R392CCgtTgt1414AY.530.004025
ORF1ab/nsp13392R392CCgtTgt1414B.1.3510.000416
ORF1ab/nsp13392R392CCgtTgt1313AY.1130.001851
ORF1ab/nsp13392R392CCgtTgt1313AY.46.60.000939
ORF1ab/nsp13392R392CCgtTgt1313B.1.2210.000923
ORF1ab/nsp13392R392CCgtTgt1313B.1.2340.001715
ORF1ab/nsp13392R392LcGtcTt1313B.1.36.180.005462
ORF1ab/nsp13392R392CCgtTgt1313P.1.140.000621
ORF1ab/nsp13392R392LcGtcTt1212B.1.617.20.000045
ORF1ab/nsp13392R392LcGtcTt1111AY.1030.000068
ORF1ab/nsp13392R392HcGtcAt1111AY.340.001067
ORF1ab/nsp13392R392CCgtTgt1111AY.670.005107
ORF1ab/nsp13392R392CCgtTgt1111AY.70.002156
ORF1ab/nsp13392R392CCgtTgt1111B.1.1.700.003752
ORF1ab/nsp13392R392CCgtTgt1111D.20.000825
ORF1ab/nsp13392R392CCgtTgt1111P.1.120.005324
ORF1ab/nsp13392R392CCgtTgt1010B.1.1.280.003112
ORF1ab/nsp13392R392CCgtTgt1010B.1.177.80.007524
ORF1ab/nsp13392R392CCgtTgt1010Q.80.001649
ORF1ab/nsp13392R392delCGT---99All0.000002
ORF1ab/nsp13392R392PcGtcCt79All0.000001
ORF1ab/nsp13392R392PcGTcCG29All0
ORF1ab/nsp13392R392CCgtTgt99AY.320.004792
ORF1ab/nsp13392R392CCgtTgt99AY.350.002097
ORF1ab/nsp13392R392LcGtcTt99AY.430.00004
ORF1ab/nsp13392R392SCgtAgt99B.10.000082
ORF1ab/nsp13392R392CCgtTgt99B.1.2320.004836
ORF1ab/nsp13392R392CCgtTgt99B.1.3110.002471
ORF1ab/nsp13392R392HcGtcAt99B.1.617.20.000034
ORF1ab/nsp13392R392CCgtTgt88A0.003096
ORF1ab/nsp13392R392CCgtTgt88AY.450.000973
ORF1ab/nsp13392R392CCgtTgt88AY.750.000448
ORF1ab/nsp13392R392CCgtTgt88AY.75.10.001442
ORF1ab/nsp13392R392CCgtTgt88B.1.1.2140.000444
ORF1ab/nsp13392R392CCgtTgt88B.1.1.4200.008048
ORF1ab/nsp13392R392LcGtcTt88B.1.20.00007
ORF1ab/nsp13392R392RcgTcgC78B.1.617.20.000026
ORF1ab/nsp13392R392RcgTcgA18B.1.617.20.000004
ORF1ab/nsp13392R392CCgtTgt77AY.1190.000247
ORF1ab/nsp13392R392RcgTcgC67AY.250.000036
ORF1ab/nsp13392R392RcgTcgA17AY.250.000006
ORF1ab/nsp13392R392CCgtTgt77AY.29.10.001544
ORF1ab/nsp13392R392CCgtTgt77AY.370.002212
ORF1ab/nsp13392R392RcgTcgC57AY.40.000008
ORF1ab/nsp13392R392RcgTcgG17AY.40.000002
ORF1ab/nsp13392R392RcgTcgA17AY.40.000002
ORF1ab/nsp13392R392HcGtcAt77AY.430.000031
ORF1ab/nsp13392R392CCgtTgt77AY.840.003062
ORF1ab/nsp13392R392HcGtcAt77B.10.000064
ORF1ab/nsp13392R392LcGtcTt77B.1.1770.000092
ORF1ab/nsp13392R392CCgtTgt77B.550.020649
ORF1ab/nsp13392R392CCgtTgt66AY.1170.000507
ORF1ab/nsp13392R392CCgtTgt66AY.270.000388
ORF1ab/nsp13392R392CCgtTgt66AY.46.10.00616
ORF1ab/nsp13392R392HcGtcAt66AY.50.000124
ORF1ab/nsp13392R392CCgtTgt66AY.60.000247
ORF1ab/nsp13392R392LcGtcTt66AY.9.10.000502
ORF1ab/nsp13392R392RcgTcgC36B.1.10.000054
ORF1ab/nsp13392R392RcgTcgG26B.1.10.000036
ORF1ab/nsp13392R392RCgTAgG16B.1.10.000018
ORF1ab/nsp13392R392CCgtTgt66B.1.110.10.6
ORF1ab/nsp13392R392HcGtcAt66B.1.1600.000187
ORF1ab/nsp13392R392CCgtTgt66B.1.2400.001293
ORF1ab/nsp13392R392LcGtcTt66B.1.36.290.003104
ORF1ab/nsp13392R392CCgtTgt66B.1.617.10.000774
ORF1ab/nsp13392R392CCgtTgt66C.10.014354
ORF1ab/nsp13392R392CCgtTgt66Q.40.002729
ORF1ab/nsp13392R392TCGtACt35All0.000001
ORF1ab/nsp13392R392TCGTACG25All0
ORF1ab/nsp13392R392CCgtTgt55AY.120.20.006427
ORF1ab/nsp13392R392LcGtcTt55AY.30.00005
ORF1ab/nsp13392R392CCgtTgt55AY.850.002136
ORF1ab/nsp13392R392CCgtTgt55AY.980.000395
ORF1ab/nsp13392R392CCgtTgt55B.1.1.1760.002197
ORF1ab/nsp13392R392CCgtTgt55B.1.1.2270.021739
ORF1ab/nsp13392R392CCgtTgt55B.1.1.3720.003444
ORF1ab/nsp13392R392HcGtcAt55B.1.1.70.000004
ORF1ab/nsp13392R392CCgtTgt55B.1.177.750.005203
ORF1ab/nsp13392R392CCgtTgt55B.1.2890.013298
ORF1ab/nsp13392R392CCgtTgt55B.1.36.290.002587
ORF1ab/nsp13392R392CCgtTgt55B.1.5170.002135
ORF1ab/nsp13392R392CCgtTgt55B.1.5990.018248
ORF1ab/nsp13392R392PcGtcCt340.166667
ORF1ab/nsp13392R392PcGTcCG140.055556
ORF1ab/nsp13392R392CCgtTgt44AE.80.001956
ORF1ab/nsp13392R392CCgtTgt44AY.1180.000251
ORF1ab/nsp13392R392CCgtTgt44AY.1210.000541
ORF1ab/nsp13392R392CCgtTgt44AY.330.000267
ORF1ab/nsp13392R392CCgtTgt44AY.380.001997
ORF1ab/nsp13392R392SCgtAgt44AY.40.000006
ORF1ab/nsp13392R392CCgtTgt44AY.4.50.00043
ORF1ab/nsp13392R392RcgTcgC44AY.440.000024
ORF1ab/nsp13392R392CCgtTgt44AY.480.00186
ORF1ab/nsp13392R392CCgtTgt44AY.7.10.000451
ORF1ab/nsp13392R392LcGtcTt44B.10.000037
ORF1ab/nsp13392R392LcGtcTt44B.1.10.000073
ORF1ab/nsp13392R392CCgtTgt44B.1.1.3060.001754
ORF1ab/nsp13392R392CCgtTgt44B.1.1.500.002716
ORF1ab/nsp13392R392delCGT---44B.1.1.70.000004
ORF1ab/nsp13392R392HcGtcAt44B.1.177.810.000757
ORF1ab/nsp13392R392CCgtTgt44B.1.177.90.005326
ORF1ab/nsp13392R392HcGtcAt44B.1.3510.000119
ORF1ab/nsp13392R392LcGtcTt44B.1.4290.000094
ORF1ab/nsp13392R392CCgtTgt44B.1.5930.043478
ORF1ab/nsp13392R392CCgtTgt44B.400.001457
ORF1ab/nsp13392R392LcGtcTt44P.10.000063
ORF1ab/nsp13392R392CCgtTgt44P.20.000747
ORF1ab/nsp13392R392RcgTcgG230.111111
ORF1ab/nsp13392R392TCGtACt230.111111
ORF1ab/nsp13392R392RCgTAgG130.055556
ORF1ab/nsp13392R392TCGTACG130.055556
ORF1ab/nsp13392R392CCgtTgt33A.23.10.002113
ORF1ab/nsp13392R392HcGtcAt33AY.1020.00008
ORF1ab/nsp13392R392CCgtTgt33AY.1080.003308
ORF1ab/nsp13392R392CCgtTgt33AY.1160.00086
ORF1ab/nsp13392R392CCgtTgt33AY.130.000483
ORF1ab/nsp13392R392SCgtAgt33AY.250.000018
ORF1ab/nsp13392R392RcgTcgC33AY.30.00003
ORF1ab/nsp13392R392HcGtcAt33AY.4.50.000322
ORF1ab/nsp13392R392CCgtTgt33AY.46.20.001906
ORF1ab/nsp13392R392CCgtTgt33AY.98.10.000145
ORF1ab/nsp13392R392CCgtTgt33AY.99.20.000276
ORF1ab/nsp13392R392HcGtcAt33B.1.10.000054
ORF1ab/nsp13392R392HcGtcAt33B.1.1.3180.000905
ORF1ab/nsp13392R392CCgtTgt33B.1.1.4860.004732
ORF1ab/nsp13392R392CCgtTgt33B.1.1260.003827
ORF1ab/nsp13392R392CCgtTgt33B.1.177.570.000843
ORF1ab/nsp13392R392LcGtcTt33B.1.36.170.001482
ORF1ab/nsp13392R392CCgtTgt33B.1.36.80.003
ORF1ab/nsp13392R392CCgtTgt33B.1.3820.026786
ORF1ab/nsp13392R392CCgtTgt33B.1.5090.002597
ORF1ab/nsp13392R392CCgtTgt33B.1.5950.000783
ORF1ab/nsp13392R392SCgtAgt33B.1.617.10.000387
ORF1ab/nsp13392R392CCgtTgt33B.1.6200.002838
ORF1ab/nsp13392R392CCgtTgt33C.60.111111
ORF1ab/nsp13392R392SCgtAgt33P.1.140.000143
ORF1ab/nsp13392R392CCgtTgt33Q.30.000435
ORF1ab/nsp13392R392SCgtAgt220.111111
ORF1ab/nsp13392R392QcGTcAG220.111111
ORF1ab/nsp13392R392CCgtTgt220.111111
ORF1ab/nsp13392R392HcGtcAt220.111111
ORF1ab/nsp13392R392CCgtTgt22A.2.20.003378
ORF1ab/nsp13392R392QcGTcAG22All0
ORF1ab/nsp13392R392NCGtAAt22All0
ORF1ab/nsp13392R392CCgtTgt22AY.100.00106
ORF1ab/nsp13392R392GCgtGgt22AY.1020.000053
ORF1ab/nsp13392R392LcGtcTt22AY.1110.000366
ORF1ab/nsp13392R392SCgtAgt22AY.1200.000074
ORF1ab/nsp13392R392CCgtTgt22AY.160.000759
ORF1ab/nsp13392R392LcGtcTt22AY.250.000012
ORF1ab/nsp13392R392HcGtcAt22AY.250.000012
ORF1ab/nsp13392R392HcGtcAt22AY.30.00002
ORF1ab/nsp13392R392SCgtAgt22AY.3.10.000171
ORF1ab/nsp13392R392HcGtcAt22AY.390.000049
ORF1ab/nsp13392R392HcGtcAt22AY.540.000191
ORF1ab/nsp13392R392CCgtTgt22AY.620.000871
ORF1ab/nsp13392R392CCgtTgt22AY.690.000373
ORF1ab/nsp13392R392CCgtTgt22AY.700.000417
ORF1ab/nsp13392R392LcGtcTt22AY.740.000231
ORF1ab/nsp13392R392CCgtTgt22AY.870.001665
ORF1ab/nsp13392R392CCgtTgt22AY.90.000135
ORF1ab/nsp13392R392CCgtTgt22AY.920.000575
ORF1ab/nsp13392R392HcGtcAt22AY.990.002099
ORF1ab/nsp13392R392HcGtcAt22B0.000256
ORF1ab/nsp13392R392PcGTcCG12B.1.10.000018
ORF1ab/nsp13392R392PcGtcCt12B.1.10.000018
ORF1ab/nsp13392R392TCGTACG12B.1.10.000018
ORF1ab/nsp13392R392TCGtACt12B.1.10.000018
ORF1ab/nsp13392R392CCgtTgt22B.1.1.1220.090909
ORF1ab/nsp13392R392CCgtTgt22B.1.1.1700.002494
ORF1ab/nsp13392R392CCgtTgt22B.1.1.2080.02439
ORF1ab/nsp13392R392CCgtTgt22B.1.1.2220.000408
ORF1ab/nsp13392R392CCgtTgt22B.1.1.2840.000215
ORF1ab/nsp13392R392CCgtTgt22B.1.1.330.000842
ORF1ab/nsp13392R392CCgtTgt22B.1.1.3540.008772
ORF1ab/nsp13392R392RcgTcgC22B.1.1.4200.002012
ORF1ab/nsp13392R392HcGtcAt22B.1.1.630.000772
ORF1ab/nsp13392R392SCgtAgt22B.1.1770.000026
ORF1ab/nsp13392R392CCgtTgt22B.1.177.410.005
ORF1ab/nsp13392R392CCgtTgt22B.1.177.530.004785
ORF1ab/nsp13392R392CCgtTgt22B.1.177.810.000379
ORF1ab/nsp13392R392CCgtTgt22B.1.177.830.002963
ORF1ab/nsp13392R392delCGT---22B.1.20.000018
ORF1ab/nsp13392R392CCgtTgt22B.1.2100.004264
ORF1ab/nsp13392R392CCgtTgt22B.1.2130.029851
ORF1ab/nsp13392R392HcGtcAt22B.1.2210.000142
ORF1ab/nsp13392R392LcGtcTt22B.1.258.170.000208
ORF1ab/nsp13392R392CCgtTgt22B.1.2790.001027
ORF1ab/nsp13392R392CCgtTgt22B.1.3490.00143
ORF1ab/nsp13392R392HcGtcAt22B.1.360.000292
ORF1ab/nsp13392R392CCgtTgt22B.1.3690.00057
ORF1ab/nsp13392R392CCgtTgt22B.1.3980.005952
ORF1ab/nsp13392R392CCgtTgt22B.1.4000.000858
ORF1ab/nsp13392R392CCgtTgt22B.1.438.20.038462
ORF1ab/nsp13392R392CCgtTgt22B.1.4390.011834
ORF1ab/nsp13392R392CCgtTgt22B.1.466.20.000782
ORF1ab/nsp13392R392HcGtcAt22B.1.4920.014085
ORF1ab/nsp13392R392CCgtTgt22B.1.5240.002813
ORF1ab/nsp13392R392CCgtTgt22B.1.5250.000226
ORF1ab/nsp13392R392HcGtcAt22B.1.5260.000047
ORF1ab/nsp13392R392CCgtTgt22B.1.5380.016129
ORF1ab/nsp13392R392CCgtTgt22B.1.5610.000794
ORF1ab/nsp13392R392CCgtTgt22B.1.5680.002222
ORF1ab/nsp13392R392CCgtTgt22B.1.5820.000981
ORF1ab/nsp13392R392SCgtAgt22B.1.617.20.000008
ORF1ab/nsp13392R392LcGtcTt22B.1.6210.000177
ORF1ab/nsp13392R392RcgTcgC22B.1.6210.000177
ORF1ab/nsp13392R392CCgtTgt22B.1.6340.006849
ORF1ab/nsp13392R392HcGtcAt22B.1.6370.000146
ORF1ab/nsp13392R392CCgtTgt22B.1.6380.105263
ORF1ab/nsp13392R392CCgtTgt22B.40.004415
ORF1ab/nsp13392R392CCgtTgt22B.60.00182
ORF1ab/nsp13392R392CCgtTgt22B.6.60.001778
ORF1ab/nsp13392R392CCgtTgt22C.130.051282
ORF1ab/nsp13392R392CCgtTgt22C.160.002121
ORF1ab/nsp13392R392CCgtTgt22C.360.001821
ORF1ab/nsp13392R392HcGtcAt22P.10.000032
ORF1ab/nsp13392R392CCgtTgt22P.1.150.000465
ORF1ab/nsp13392R392CCgtTgt22P.1.70.000639
ORF1ab/nsp13392R392CCgtTgt22P.40.007605
ORF1ab/nsp13392R392NCGtAAt110.055556
ORF1ab/nsp13392R392YCGtTAt110.055556
ORF1ab/nsp13392R392XCGTTAG110.055556
ORF1ab/nsp13392R392KCGTAAG110.055556
ORF1ab/nsp13392R392WCgTTgG110.055556
ORF1ab/nsp13392R392CCgtTgt11A.2.50.000499
ORF1ab/nsp13392R392CCgtTgt11A.240.071429
ORF1ab/nsp13392R392SCgtAgt11AD.20.000219
ORF1ab/nsp13392R392KCGTAAG11All0
ORF1ab/nsp13392R392XCGTTAG11All0
ORF1ab/nsp13392R392del1Cgt-gt11All0
ORF1ab/nsp13392R392YCGtTAt11All0
ORF1ab/nsp13392R392WCgTTgG11All0
ORF1ab/nsp13392R392CCgtTgt11AP.10.001502
ORF1ab/nsp13392R392CCgtTgt11AY.10.000396
ORF1ab/nsp13392R392LcGtcTt11AY.1000.000046
ORF1ab/nsp13392R392HcGtcAt11AY.1010.00049
ORF1ab/nsp13392R392RcgTcgC11AY.1020.000027
ORF1ab/nsp13392R392HcGtcAt11AY.1040.001984
ORF1ab/nsp13392R392CCgtTgt11AY.1040.001984
ORF1ab/nsp13392R392HcGtcAt11AY.1060.000335
ORF1ab/nsp13392R392LcGtcTt11AY.110.001339
ORF1ab/nsp13392R392RcgTcgC11AY.1110.000183
ORF1ab/nsp13392R392HcGtcAt11AY.1110.000183
ORF1ab/nsp13392R392CCgtTgt11AY.1110.000183
ORF1ab/nsp13392R392CCgtTgt11AY.116.10.000311
ORF1ab/nsp13392R392HcGtcAt11AY.116.10.000311
ORF1ab/nsp13392R392RcgTcgC11AY.1190.000035
ORF1ab/nsp13392R392HcGtcAt11AY.1210.000135
ORF1ab/nsp13392R392CCgtTgt11AY.140.000088
ORF1ab/nsp13392R392CCgtTgt11AY.16.10.00047
ORF1ab/nsp13392R392CCgtTgt11AY.20.000356
ORF1ab/nsp13392R392HcGtcAt11AY.200.000039
ORF1ab/nsp13392R392CCgtTgt11AY.210.001898
ORF1ab/nsp13392R392HcGtcAt11AY.230.00007
ORF1ab/nsp13392R392HcGtcAt11AY.290.000016
ORF1ab/nsp13392R392LcGtcTt11AY.29.10.000221
ORF1ab/nsp13392R392CCgtTgt11AY.300.000396
ORF1ab/nsp13392R392CCgtTgt11AY.310.018519
ORF1ab/nsp13392R392RcgTcgC11AY.320.000532
ORF1ab/nsp13392R392CCgtTgt11AY.340.000097
ORF1ab/nsp13392R392del1Cgt-gt11AY.350.000233
ORF1ab/nsp13392R392LcGtcTt11AY.390.000025
ORF1ab/nsp13392R392delCGT---11AY.390.000025
ORF1ab/nsp13392R392LcGtcTt11AY.39.10.00004
ORF1ab/nsp13392R392CCgtTgt11AY.39.1.10.000725
ORF1ab/nsp13392R392CCgtTgt11AY.4.10.000737
ORF1ab/nsp13392R392RcgTcgG11AY.4.10.000737
ORF1ab/nsp13392R392LcGtcTt11AY.4.20.000022
ORF1ab/nsp13392R392HcGtcAt11AY.4.20.000022
ORF1ab/nsp13392R392RcgTcgC11AY.4.20.000022
ORF1ab/nsp13392R392CCgtTgt11AY.4.2.10.000149
ORF1ab/nsp13392R392RcgTcgC11AY.4.2.10.000149
ORF1ab/nsp13392R392CCgtTgt11AY.4.30.000842
ORF1ab/nsp13392R392SCgtAgt11AY.420.00004
ORF1ab/nsp13392R392GCgtGgt11AY.430.000004
ORF1ab/nsp13392R392SCgtAgt11AY.440.000006
ORF1ab/nsp13392R392RcgTcgC11AY.50.000021
ORF1ab/nsp13392R392CCgtTgt11AY.5.30.000337
ORF1ab/nsp13392R392SCgtAgt11AY.5.40.000277
ORF1ab/nsp13392R392CCgtTgt11AY.510.000909
ORF1ab/nsp13392R392LcGtcTt11AY.540.000095
ORF1ab/nsp13392R392SCgtAgt11AY.540.000095
ORF1ab/nsp13392R392CCgtTgt11AY.570.000656
ORF1ab/nsp13392R392CCgtTgt11AY.600.000938
ORF1ab/nsp13392R392CCgtTgt11AY.650.000533
ORF1ab/nsp13392R392LcGtcTt11AY.7.10.000113
ORF1ab/nsp13392R392CCgtTgt11AY.710.000475
ORF1ab/nsp13392R392HcGtcAt11AY.730.000665
ORF1ab/nsp13392R392GCgtGgt11AY.750.000056
ORF1ab/nsp13392R392RcgTcgC11AY.750.000056
ORF1ab/nsp13392R392CCgtTgt11AY.760.004831
ORF1ab/nsp13392R392CCgtTgt11AY.780.001541
ORF1ab/nsp13392R392CCgtTgt11AY.80.000606
ORF1ab/nsp13392R392CCgtTgt11AY.800.001129
ORF1ab/nsp13392R392CCgtTgt11AY.880.000884
ORF1ab/nsp13392R392CCgtTgt11AY.890.004902
ORF1ab/nsp13392R392RcgTcgC11AY.9.20.000037
ORF1ab/nsp13392R392LcGtcTt11AY.9.20.000037
ORF1ab/nsp13392R392CCgtTgt11AY.930.000273
ORF1ab/nsp13392R392HcGtcAt11AY.98.10.000048
ORF1ab/nsp13392R392RcgTcgC11AY.98.10.000048
ORF1ab/nsp13392R392CCgtTgt11AY.99.10.001553
ORF1ab/nsp13392R392HcGtcAt11AZ.30.00152
ORF1ab/nsp13392R392CCgtTgt11AZ.50.003509
ORF1ab/nsp13392R392RcgTcgA11B0.000128
ORF1ab/nsp13392R392SCgtAgt11B.1.10.000018
ORF1ab/nsp13392R392CCgtTgt11B.1.1.1010.01
ORF1ab/nsp13392R392CCgtTgt11B.1.1.1170.009709
ORF1ab/nsp13392R392CCgtTgt11B.1.1.1210.002427
ORF1ab/nsp13392R392LcGtcTt11B.1.1.1760.000439
ORF1ab/nsp13392R392CCgtTgt11B.1.1.1800.010753
ORF1ab/nsp13392R392CCgtTgt11B.1.1.1980.001468
ORF1ab/nsp13392R392RcgTcgC11B.1.1.2220.000204
ORF1ab/nsp13392R392CCgtTgt11B.1.1.2250.007194
ORF1ab/nsp13392R392LcGtcTt11B.1.1.2290.005747
ORF1ab/nsp13392R392CCgtTgt11B.1.1.2370.005405
ORF1ab/nsp13392R392CCgtTgt11B.1.1.2430.004082
ORF1ab/nsp13392R392CCgtTgt11B.1.1.2550.00303
ORF1ab/nsp13392R392CCgtTgt11B.1.1.2570.009709
ORF1ab/nsp13392R392LcGtcTt11B.1.1.2690.001353
ORF1ab/nsp13392R392CCgtTgt11B.1.1.2940.001266
ORF1ab/nsp13392R392CCgtTgt11B.1.1.3010.001179
ORF1ab/nsp13392R392CCgtTgt11B.1.1.3170.000412
ORF1ab/nsp13392R392CCgtTgt11B.1.1.3180.000302
ORF1ab/nsp13392R392LcGtcTt11B.1.1.3190.017544
ORF1ab/nsp13392R392RcgTcgA11B.1.1.3260.001761
ORF1ab/nsp13392R392HcGtcAt11B.1.1.3360.016667
ORF1ab/nsp13392R392CCgtTgt11B.1.1.3480.000796
ORF1ab/nsp13392R392CCgtTgt11B.1.1.370.000193
ORF1ab/nsp13392R392CCgtTgt11B.1.1.3890.006061
ORF1ab/nsp13392R392HcGtcAt11B.1.1.390.00051
ORF1ab/nsp13392R392CCgtTgt11B.1.1.410.006329
ORF1ab/nsp13392R392CCgtTgt11B.1.1.4290.004608
ORF1ab/nsp13392R392CCgtTgt11B.1.1.4320.001266
ORF1ab/nsp13392R392CCgtTgt11B.1.1.440.00241
ORF1ab/nsp13392R392CCgtTgt11B.1.1.480.002874
ORF1ab/nsp13392R392CCgtTgt11B.1.1.5120.028571
ORF1ab/nsp13392R392LcGtcTt11B.1.1.5190.00004
ORF1ab/nsp13392R392delCGT---11B.1.1.5190.00004
ORF1ab/nsp13392R392CCgtTgt11B.1.1.5230.001563
ORF1ab/nsp13392R392HcGtcAt11B.1.1.540.003021
ORF1ab/nsp13392R392LcGtcTt11B.1.1.630.000386
ORF1ab/nsp13392R392PcGtcCt11B.1.1.70.000001
ORF1ab/nsp13392R392CCgtTgt11B.1.1400.018868
ORF1ab/nsp13392R392GCgtGgt11B.1.1770.000013
ORF1ab/nsp13392R392HcGtcAt11B.1.1770.000013
ORF1ab/nsp13392R392CCgtTgt11B.1.177.100.000878
ORF1ab/nsp13392R392CCgtTgt11B.1.177.160.000664
ORF1ab/nsp13392R392CCgtTgt11B.1.177.400.005155
ORF1ab/nsp13392R392LcGtcTt11B.1.177.460.000918
ORF1ab/nsp13392R392HcGtcAt11B.1.177.570.000281
ORF1ab/nsp13392R392CCgtTgt11B.1.177.60.000977
ORF1ab/nsp13392R392CCgtTgt11B.1.177.650.000665
ORF1ab/nsp13392R392CCgtTgt11B.1.177.730.000566
ORF1ab/nsp13392R392CCgtTgt11B.1.177.790.002342
ORF1ab/nsp13392R392LcGtcTt11B.1.177.810.000189
ORF1ab/nsp13392R392LcGtcTt11B.1.177.860.000183
ORF1ab/nsp13392R392CCgtTgt11B.1.177.860.000183
ORF1ab/nsp13392R392CCgtTgt11B.1.1890.004292
ORF1ab/nsp13392R392PcGtcCt11B.1.20.000009
ORF1ab/nsp13392R392SCgtAgt11B.1.20.000009
ORF1ab/nsp13392R392RcgTcgC11B.1.20.000009
ORF1ab/nsp13392R392CCgtTgt11B.1.2050.02381
ORF1ab/nsp13392R392CCgtTgt11B.1.214.20.0006
ORF1ab/nsp13392R392SCgtAgt11B.1.2210.000071
ORF1ab/nsp13392R392NCGtAAt11B.1.2210.000071
ORF1ab/nsp13392R392HcGtcAt11B.1.2320.000537
ORF1ab/nsp13392R392CCgtTgt11B.1.2390.001221
ORF1ab/nsp13392R392LcGtcTt11B.1.2400.000216
ORF1ab/nsp13392R392RcgTcgC11B.1.2410.000812
ORF1ab/nsp13392R392SCgtAgt11B.1.2430.00007
ORF1ab/nsp13392R392LcGtcTt11B.1.2580.000067
ORF1ab/nsp13392R392HcGtcAt11B.1.2580.000067
ORF1ab/nsp13392R392CCgtTgt11B.1.258.170.000104
ORF1ab/nsp13392R392CCgtTgt11B.1.3200.001245
ORF1ab/nsp13392R392CCgtTgt11B.1.3370.005587
ORF1ab/nsp13392R392LcGtcTt11B.1.3510.00003
ORF1ab/nsp13392R392CCgtTgt11B.1.351.20.000303
ORF1ab/nsp13392R392LcGtcTt11B.1.360.000146
ORF1ab/nsp13392R392CCgtTgt11B.1.36.170.000494
ORF1ab/nsp13392R392CCgtTgt11B.1.36.190.009259
ORF1ab/nsp13392R392SCgtAgt11B.1.36.220.001208
ORF1ab/nsp13392R392CCgtTgt11B.1.36.220.001208
ORF1ab/nsp13392R392CCgtTgt11B.1.36.310.001751
ORF1ab/nsp13392R392CCgtTgt11B.1.36.360.000602
ORF1ab/nsp13392R392CCgtTgt11B.1.3670.000792
ORF1ab/nsp13392R392CCgtTgt11B.1.3750.00082
ORF1ab/nsp13392R392CCgtTgt11B.1.3890.001002
ORF1ab/nsp13392R392CCgtTgt11B.1.3950.007042
ORF1ab/nsp13392R392CCgtTgt11B.1.4080.00369
ORF1ab/nsp13392R392CCgtTgt11B.1.4090.000781
ORF1ab/nsp13392R392LcGtcTt11B.1.4160.001269
ORF1ab/nsp13392R392CCgtTgt11B.1.4220.000812
ORF1ab/nsp13392R392delCGT---11B.1.4270.00005
ORF1ab/nsp13392R392CCgtTgt11B.1.4280.00102
ORF1ab/nsp13392R392HcGtcAt11B.1.4290.000024
ORF1ab/nsp13392R392CCgtTgt11B.1.438.10.000107
ORF1ab/nsp13392R392HcGtcAt11B.1.4590.004082
ORF1ab/nsp13392R392CCgtTgt11B.1.4620.007246
ORF1ab/nsp13392R392CCgtTgt11B.1.4680.005714
ORF1ab/nsp13392R392CCgtTgt11B.1.4730.019231
ORF1ab/nsp13392R392CCgtTgt11B.1.4870.019608
ORF1ab/nsp13392R392CCgtTgt11B.1.5270.003704
ORF1ab/nsp13392R392CCgtTgt11B.1.5510.00129
ORF1ab/nsp13392R392CCgtTgt11B.1.5650.00081
ORF1ab/nsp13392R392HcGtcAt11B.1.5730.006098
ORF1ab/nsp13392R392CCgtTgt11B.1.5750.000303
ORF1ab/nsp13392R392PcGtcCt11B.1.5760.000907
ORF1ab/nsp13392R392CCgtTgt11B.1.5800.004065
ORF1ab/nsp13392R392LcGtcTt11B.1.5970.00463
ORF1ab/nsp13392R392LcGtcTt11B.1.617.30.002985
ORF1ab/nsp13392R392LcGtcTt11B.1.6370.000073
ORF1ab/nsp13392R392CCgtTgt11B.1.760.011364
ORF1ab/nsp13392R392CCgtTgt11B.1.9.50.005682
ORF1ab/nsp13392R392CCgtTgt11B.280.003279
ORF1ab/nsp13392R392CCgtTgt11B.30.000831
ORF1ab/nsp13392R392CCgtTgt11B.610.005747
ORF1ab/nsp13392R392CCgtTgt11C.140.004329
ORF1ab/nsp13392R392CCgtTgt11C.180.002591
ORF1ab/nsp13392R392CCgtTgt11C.300.001727
ORF1ab/nsp13392R392CCgtTgt11C.350.000774
ORF1ab/nsp13392R392CCgtTgt11C.36.30.000567
ORF1ab/nsp13392R392CCgtTgt11C.37.10.002618
ORF1ab/nsp13392R392RcgTcgC11D.20.000075
ORF1ab/nsp13392R392RcgTcgC11P.10.000016
ORF1ab/nsp13392R392CCgtTgt11P.1.130.000898
ORF1ab/nsp13392R392RcgTcgC11P.1.140.000048
ORF1ab/nsp13392R392CCgtTgt11P.1.160.000374
ORF1ab/nsp13392R392LcGtcTt11P.1.20.001156
ORF1ab/nsp13392R392CCgtTgt11Q.10.000126
ORF1ab/nsp13392R392CCgtTgt11Q.70.001111
ORF1ab/nsp13392R392CCgtTgt11W.40.001351
ORF1ab/nsp13392R392CCgtTgt11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.