CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 390

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13390R390RR5714RsynagAagG619661430.99144617404-17406
ORF1ab/nsp13390R390RR5714RsynAgaCga6196490.0079083317404-17406
ORF1ab/nsp13390R390RR5714RsynAgACgG619630.00048418317404-17406
ORF1ab/nsp13390R390RR5714RsynAgACgT619610.00016139417404-17406
ORF1ab/nsp13390R390KR5714KnonsynaGaaAa35320.91428617404-17406
ORF1ab/nsp13390R390KR5714KnonsynaGAaAG3530.085714317404-17406
ORF1ab/nsp13390R390IR5714InonsynaGaaTa1212117404-17406
ORF1ab/nsp13390R390XR5714XnonsynAgaTga960.66666717404-17406
ORF1ab/nsp13390R390XR5714XnonsynAGaTAa930.33333317404-17406
ORF1ab/nsp13390R390QR5714QnonsynAGaCAa740.57142917404-17406
ORF1ab/nsp13390R390QR5714QnonsynAGACAG730.42857117404-17406
ORF1ab/nsp13390R390SR5714SnonsynagAagT55117404-17406
ORF1ab/nsp13390R390NR5714NnonsynaGAaAT33117404-17406
ORF1ab/nsp13390R390delR5714deldelAGA---33117404-17406
ORF1ab/nsp13390R390TR5714TnonsynaGaaCa22117404-17406
ORF1ab/nsp13390R390CR5714CnonsynAgATgT22117404-17406
ORF1ab/nsp13390R390YR5714YnonsynAGATAT22117404-17406
ORF1ab/nsp13390R390GR5714GnonsynAgaGga22117404-17406
ORF1ab/nsp13390R390LR5714LnonsynAGaTTa11117404-17406
ORF1ab/nsp13390R390ER5714EnonsynAGaGAa11117404-17406
ORF1ab/nsp13390R390HR5714HnonsynAGACAT11117404-17406

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13390R390RagAagG61436196All0.001175
ORF1ab/nsp13390R390RAgaCga496196All0.000009
ORF1ab/nsp13390R390RAgACgG36196All0.000001
ORF1ab/nsp13390R390RAgACgT16196All0
ORF1ab/nsp13390R390RagAagG54055405AY.130.87009
ORF1ab/nsp13390R390RagAagG7389B.1.1.70.000065
ORF1ab/nsp13390R390RAgaCga1689B.1.1.70.000014
ORF1ab/nsp13390R390RagAagG7272AY.40.000112
ORF1ab/nsp13390R390RagAagG7070AY.750.003922
ORF1ab/nsp13390R390RagAagG5050AY.46.50.009921
ORF1ab/nsp13390R390RagAagG3944B.10.000357
ORF1ab/nsp13390R390RAgaCga544B.10.000046
ORF1ab/nsp13390R390RagAagG4040AY.510.036364
ORF1ab/nsp13390R390KaGaaAa3235All0.000006
ORF1ab/nsp13390R390KaGAaAG335All0.000001
ORF1ab/nsp13390R390RagAagG3434B.1.5260.000799
ORF1ab/nsp13390R390RagAagG2434B.1.617.20.00009
ORF1ab/nsp13390R390RAgaCga1034B.1.617.20.000038
ORF1ab/nsp13390R390RagAagG3131AY.50.00064
ORF1ab/nsp13390R390RagAagG2525AY.540.002384
ORF1ab/nsp13390R390RagAagG2323AY.620.010022
ORF1ab/nsp13390R390RagAagG1416B.1.10.000254
ORF1ab/nsp13390R390RAgaCga116B.1.10.000018
ORF1ab/nsp13390R390RAgACgG116B.1.10.000018
ORF1ab/nsp13390R390RagAagG1414AY.400.0135
ORF1ab/nsp13390R390RagAagG1313B.1.20.000114
ORF1ab/nsp13390R390IaGaaTa1212All0.000002
ORF1ab/nsp13390R390RagAagG1212AY.730.007984
ORF1ab/nsp13390R390RagAagG1111AY.250.000066
ORF1ab/nsp13390R390RagAagG1010AY.440.000061
ORF1ab/nsp13390R390XAgaTga69All0.000001
ORF1ab/nsp13390R390XAGaTAa39All0.000001
ORF1ab/nsp13390R390RagAagG99AY.390.000222
ORF1ab/nsp13390R390RagAagG99B.1.2580.000599
ORF1ab/nsp13390R390RagAagG78AY.4.20.000152
ORF1ab/nsp13390R390RAgaCga18AY.4.20.000022
ORF1ab/nsp13390R390KaGaaAa570.277778
ORF1ab/nsp13390R390KaGAaAG270.111111
ORF1ab/nsp13390R390QAGaCAa47All0.000001
ORF1ab/nsp13390R390QAGACAG37All0.000001
ORF1ab/nsp13390R390RagAagG77AY.1030.000043
ORF1ab/nsp13390R390RagAagG77AY.430.000031
ORF1ab/nsp13390R390RagAagG77B0.000895
ORF1ab/nsp13390R390XAgaTga360.166667
ORF1ab/nsp13390R390XAGaTAa360.166667
ORF1ab/nsp13390R390RagAagG260.111111
ORF1ab/nsp13390R390RAgACgG260.111111
ORF1ab/nsp13390R390RAgaCga260.111111
ORF1ab/nsp13390R390RagAagG66AY.1190.000212
ORF1ab/nsp13390R390RagAagG66AY.650.003198
ORF1ab/nsp13390R390RagAagG66AY.9.20.00022
ORF1ab/nsp13390R390KaGaaAa66B.1.20.000053
ORF1ab/nsp13390R390SagAagT55All0.000001
ORF1ab/nsp13390R390RagAagG35AY.200.000117
ORF1ab/nsp13390R390RAgaCga25AY.200.000078
ORF1ab/nsp13390R390RagAagG55AY.75.10.000902
ORF1ab/nsp13390R390RagAagG55AY.840.002187
ORF1ab/nsp13390R390RagAagG45B.1.1600.000125
ORF1ab/nsp13390R390RAgaCga15B.1.1600.000031
ORF1ab/nsp13390R390RagAagG55B.1.4270.000252
ORF1ab/nsp13390R390RagAagG55P.1.140.000239
ORF1ab/nsp13390R390QAGACAG240.111111
ORF1ab/nsp13390R390QAGaCAa240.111111
ORF1ab/nsp13390R390KaGaaAa44AY.1030.000025
ORF1ab/nsp13390R390RagAagG44AY.260.000113
ORF1ab/nsp13390R390RagAagG44AY.30.00004
ORF1ab/nsp13390R390RagAagG44AY.520.003257
ORF1ab/nsp13390R390RagAagG44AY.610.000419
ORF1ab/nsp13390R390KaGaaAa44B.1.1.2970.008949
ORF1ab/nsp13390R390RAgaCga24B.1.2210.000142
ORF1ab/nsp13390R390RAgACgT14B.1.2210.000071
ORF1ab/nsp13390R390RagAagG14B.1.2210.000071
ORF1ab/nsp13390R390RagAagG44B.1.3510.000119
ORF1ab/nsp13390R390RagAagG44B.1.438.10.000429
ORF1ab/nsp13390R390delAGA---33All0.000001
ORF1ab/nsp13390R390NaGAaAT33All0.000001
ORF1ab/nsp13390R390RAgaCga33AY.1000.000138
ORF1ab/nsp13390R390RAgaCga33AY.1020.00008
ORF1ab/nsp13390R390KaGaaAa33AY.250.000018
ORF1ab/nsp13390R390RagAagG33AY.340.000291
ORF1ab/nsp13390R390IaGaaTa33B.10.000027
ORF1ab/nsp13390R390KaGaaAa23B.1.10.000036
ORF1ab/nsp13390R390KaGAaAG13B.1.10.000018
ORF1ab/nsp13390R390RagAagG33B.1.1770.00004
ORF1ab/nsp13390R390RagAagG33B.1.4130.012766
ORF1ab/nsp13390R390RagAagG33P.10.000047
ORF1ab/nsp13390R390SagAagT220.111111
ORF1ab/nsp13390R390NaGAaAT220.111111
ORF1ab/nsp13390R390CAgATgT220.111111
ORF1ab/nsp13390R390YAGATAT220.111111
ORF1ab/nsp13390R390YAGATAT22All0
ORF1ab/nsp13390R390GAgaGga22All0
ORF1ab/nsp13390R390TaGaaCa22All0
ORF1ab/nsp13390R390CAgATgT22All0
ORF1ab/nsp13390R390RagAagG22AY.1170.000169
ORF1ab/nsp13390R390KaGaaAa22AY.40.000003
ORF1ab/nsp13390R390RagAagG22AY.590.001059
ORF1ab/nsp13390R390RagAagG22AY.850.000854
ORF1ab/nsp13390R390RagAagG22AY.90.000135
ORF1ab/nsp13390R390RagAagG22AY.98.10.000097
ORF1ab/nsp13390R390RagAagG22AY.99.20.000184
ORF1ab/nsp13390R390QAGaCAa12B.1.10.000018
ORF1ab/nsp13390R390QAGACAG12B.1.10.000018
ORF1ab/nsp13390R390RagAagG22B.1.1.280.000622
ORF1ab/nsp13390R390delAGA---22B.1.1.70.000002
ORF1ab/nsp13390R390RagAagG22B.1.1.700.000682
ORF1ab/nsp13390R390IaGaaTa22B.1.20.000018
ORF1ab/nsp13390R390KaGaaAa22B.1.2210.000142
ORF1ab/nsp13390R390RagAagG22B.1.4290.000047
ORF1ab/nsp13390R390RagAagG22B.1.5580.009132
ORF1ab/nsp13390R390RagAagG22B.1.5960.000174
ORF1ab/nsp13390R390IaGaaTa11A0.000387
ORF1ab/nsp13390R390RagAagG11AE.80.000489
ORF1ab/nsp13390R390HAGACAT11All0
ORF1ab/nsp13390R390LAGaTTa11All0
ORF1ab/nsp13390R390EAGaGAa11All0
ORF1ab/nsp13390R390KaGaaAa11AY.1020.000027
ORF1ab/nsp13390R390RagAagG11AY.1060.000335
ORF1ab/nsp13390R390RagAagG11AY.1100.000113
ORF1ab/nsp13390R390RagAagG11AY.1160.000287
ORF1ab/nsp13390R390RagAagG11AY.16.10.00047
ORF1ab/nsp13390R390RagAagG11AY.230.00007
ORF1ab/nsp13390R390RagAagG11AY.29.10.000221
ORF1ab/nsp13390R390RagAagG11AY.3.10.000085
ORF1ab/nsp13390R390RagAagG11AY.330.000067
ORF1ab/nsp13390R390EAGaGAa11AY.440.000006
ORF1ab/nsp13390R390RagAagG11AY.450.000122
ORF1ab/nsp13390R390RagAagG11AY.46.40.000165
ORF1ab/nsp13390R390RagAagG11AY.5.40.000277
ORF1ab/nsp13390R390RagAagG11AY.670.000464
ORF1ab/nsp13390R390RagAagG11AY.720.001361
ORF1ab/nsp13390R390RagAagG11AY.900.000684
ORF1ab/nsp13390R390RagAagG11AY.930.000273
ORF1ab/nsp13390R390GAgaGga11B.10.000009
ORF1ab/nsp13390R390XAgaTga11B.10.000009
ORF1ab/nsp13390R390RagAagG11B.1.1.1530.001095
ORF1ab/nsp13390R390IaGaaTa11B.1.1.1640.005155
ORF1ab/nsp13390R390XAgaTga11B.1.1.1640.005155
ORF1ab/nsp13390R390RagAagG11B.1.1.2140.000055
ORF1ab/nsp13390R390RagAagG11B.1.1.2160.00089
ORF1ab/nsp13390R390SagAagT11B.1.1.2220.000204
ORF1ab/nsp13390R390RagAagG11B.1.1.2270.004348
ORF1ab/nsp13390R390RagAagG11B.1.1.2910.000742
ORF1ab/nsp13390R390RagAagG11B.1.1.3060.000438
ORF1ab/nsp13390R390RagAagG11B.1.1.3160.000925
ORF1ab/nsp13390R390XAgaTga11B.1.1.3420.0625
ORF1ab/nsp13390R390LAGaTTa11B.1.1.3420.0625
ORF1ab/nsp13390R390IaGaaTa11B.1.1.3420.0625
ORF1ab/nsp13390R390RagAagG11B.1.1.370.000193
ORF1ab/nsp13390R390RagAagG11B.1.1.4090.002833
ORF1ab/nsp13390R390GAgaGga11B.1.1.70.000001
ORF1ab/nsp13390R390IaGaaTa11B.1.1570.002985
ORF1ab/nsp13390R390KaGaaAa11B.1.1600.000031
ORF1ab/nsp13390R390SagAagT11B.1.2210.000071
ORF1ab/nsp13390R390QAGaCAa11B.1.2210.000071
ORF1ab/nsp13390R390NaGAaAT11B.1.2210.000071
ORF1ab/nsp13390R390HAGACAT11B.1.2210.000071
ORF1ab/nsp13390R390TaGaaCa11B.1.2430.00007
ORF1ab/nsp13390R390RagAagG11B.1.2980.002114
ORF1ab/nsp13390R390RagAagG11B.1.351.50.0006
ORF1ab/nsp13390R390RagAagG11B.1.36.100.004785
ORF1ab/nsp13390R390IaGaaTa11B.1.4160.001269
ORF1ab/nsp13390R390IaGaaTa11B.1.4320.011236
ORF1ab/nsp13390R390delAGA---11B.1.4340.052632
ORF1ab/nsp13390R390RagAagG11B.1.466.20.000391
ORF1ab/nsp13390R390IaGaaTa11B.1.5640.000426
ORF1ab/nsp13390R390RAgaCga11B.1.5950.000261
ORF1ab/nsp13390R390KaGaaAa11B.1.5960.000087
ORF1ab/nsp13390R390KaGaaAa11B.1.617.20.000004
ORF1ab/nsp13390R390RagAagG11B.30.000831
ORF1ab/nsp13390R390RagAagG11C.10.002392
ORF1ab/nsp13390R390RAgaCga11C.370.000116
ORF1ab/nsp13390R390TaGaaCa11D.20.000075
ORF1ab/nsp13390R390SagAagT11D.20.000075
ORF1ab/nsp13390R390RAgaCga11Q.80.000165