CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 379

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13379A379AA5703AsyngcCgcT492948400.98194417371-17373
ORF1ab/nsp13379A379AA5703AsyngcCgcA4929820.016636217371-17373
ORF1ab/nsp13379A379AA5703AsyngcCgcG492970.0014201717371-17373
ORF1ab/nsp13379A379SA5703SnonsynGccTcc875875117371-17373
ORF1ab/nsp13379A379VA5703VnonsyngCcgTc664664117371-17373
ORF1ab/nsp13379A379TA5703TnonsynGccAcc163163117371-17373
ORF1ab/nsp13379A379delA5703deldelGCC---66117371-17373
ORF1ab/nsp13379A379del1A5703del1delgcCgc-44117371-17373
ORF1ab/nsp13379A379NA5703NnonsynGCCAAT11117371-17373
ORF1ab/nsp13379A379del2A5703del2delGCC--T11117371-17373
ORF1ab/nsp13379A379DA5703DnonsyngCcgAc11117371-17373
ORF1ab/nsp13379A379PA5703PnonsynGccCcc11117371-17373

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13379A379AgcCgcT48404929All0.000926
ORF1ab/nsp13379A379AgcCgcA824929All0.000016
ORF1ab/nsp13379A379AgcCgcG74929All0.000001
ORF1ab/nsp13379A379AgcCgcT12431248B.1.1.70.001113
ORF1ab/nsp13379A379AgcCgcA51248B.1.1.70.000004
ORF1ab/nsp13379A379SGccTcc875875All0.000167
ORF1ab/nsp13379A379AgcCgcT701708AY.40.001091
ORF1ab/nsp13379A379AgcCgcA7708AY.40.000011
ORF1ab/nsp13379A379VgCcgTc664664All0.000127
ORF1ab/nsp13379A379SGccTcc474474B.1.617.20.001785
ORF1ab/nsp13379A379AgcCgcT349349B.1.5260.008203
ORF1ab/nsp13379A379AgcCgcT278280AY.1030.001726
ORF1ab/nsp13379A379AgcCgcG1280AY.1030.000006
ORF1ab/nsp13379A379AgcCgcA1280AY.1030.000006
ORF1ab/nsp13379A379AgcCgcT217220B.1.617.20.000817
ORF1ab/nsp13379A379AgcCgcA3220B.1.617.20.000011
ORF1ab/nsp13379A379AgcCgcT192200AY.30.00191
ORF1ab/nsp13379A379AgcCgcA8200AY.30.00008
ORF1ab/nsp13379A379TGccAcc163163All0.000031
ORF1ab/nsp13379A379VgCcgTc160160AY.250.000962
ORF1ab/nsp13379A379AgcCgcT147153B.1.20.001294
ORF1ab/nsp13379A379AgcCgcA3153B.1.20.000026
ORF1ab/nsp13379A379AgcCgcG3153B.1.20.000026
ORF1ab/nsp13379A379AgcCgcT124125B.1.1770.001633
ORF1ab/nsp13379A379AgcCgcA1125B.1.1770.000013
ORF1ab/nsp13379A379AgcCgcT106107AY.430.00047
ORF1ab/nsp13379A379AgcCgcA1107AY.430.000004
ORF1ab/nsp13379A379AgcCgcT8891AY.440.000536
ORF1ab/nsp13379A379AgcCgcA391AY.440.000018
ORF1ab/nsp13379A379AgcCgcT7676AY.230.005301
ORF1ab/nsp13379A379AgcCgcT6969B.1.243.21
ORF1ab/nsp13379A379AgcCgcT6465AY.250.000385
ORF1ab/nsp13379A379AgcCgcA165AY.250.000006
ORF1ab/nsp13379A379SGccTcc6262AY.46.60.004477
ORF1ab/nsp13379A379VgCcgTc5555B.1.1.70.000049
ORF1ab/nsp13379A379AgcCgcT4350P.10.000677
ORF1ab/nsp13379A379AgcCgcA750P.10.00011
ORF1ab/nsp13379A379AgcCgcT4949AY.460.0051
ORF1ab/nsp13379A379AgcCgcT4648B.1.10.000834
ORF1ab/nsp13379A379AgcCgcA248B.1.10.000036
ORF1ab/nsp13379A379AgcCgcT4646B0.005879
ORF1ab/nsp13379A379AgcCgcT4145B.10.000376
ORF1ab/nsp13379A379AgcCgcA445B.10.000037
ORF1ab/nsp13379A379VgCcgTc4242B.10.000385
ORF1ab/nsp13379A379AgcCgcT4141AY.70.008036
ORF1ab/nsp13379A379VgCcgTc3939B.1.20.000343
ORF1ab/nsp13379A379AgcCgcT3737B.1.1.630.014275
ORF1ab/nsp13379A379AgcCgcT3434B.1.351.20.010287
ORF1ab/nsp13379A379SGccTcc3333AY.430.000146
ORF1ab/nsp13379A379SGccTcc3333B.1.1.70.00003
ORF1ab/nsp13379A379TGccAcc2929B.1.1770.000382
ORF1ab/nsp13379A379AgcCgcT2828AY.1200.001041
ORF1ab/nsp13379A379VgCcgTc2828AY.40.000044
ORF1ab/nsp13379A379AgcCgcT2727B.1.2430.001879
ORF1ab/nsp13379A379AgcCgcT2626B.1.177.770.018882
ORF1ab/nsp13379A379AgcCgcT2525C.370.002902
ORF1ab/nsp13379A379VgCcgTc2323AY.430.000102
ORF1ab/nsp13379A379AgcCgcT2323AY.9.10.001926
ORF1ab/nsp13379A379SGccTcc2222AY.250.000132
ORF1ab/nsp13379A379SGccTcc2121AY.1020.000557
ORF1ab/nsp13379A379SGccTcc2121AY.260.000595
ORF1ab/nsp13379A379TGccAcc2121AY.420.000845
ORF1ab/nsp13379A379TGccAcc2121B.1.20.000185
ORF1ab/nsp13379A379AgcCgcT2121B.1.360.003064
ORF1ab/nsp13379A379AgcCgcT2020A.2.5.20.031447
ORF1ab/nsp13379A379AgcCgcT2020AY.260.000566
ORF1ab/nsp13379A379AgcCgcT2020AY.7.20.011186
ORF1ab/nsp13379A379VgCcgTc2020B.1.3510.000595
ORF1ab/nsp13379A379AgcCgcT1719B.1.1600.00053
ORF1ab/nsp13379A379AgcCgcA219B.1.1600.000062
ORF1ab/nsp13379A379VgCcgTc1919B.1.5260.000447
ORF1ab/nsp13379A379VgCcgTc1919B.1.617.20.000072
ORF1ab/nsp13379A379AgcCgcT1819B.1.6210.001593
ORF1ab/nsp13379A379AgcCgcA119B.1.6210.000089
ORF1ab/nsp13379A379AgcCgcT1818AY.1020.000477
ORF1ab/nsp13379A379AgcCgcT1818AY.390.000445
ORF1ab/nsp13379A379VgCcgTc1818B.1.2210.001279
ORF1ab/nsp13379A379AgcCgcT1718B.1.4290.0004
ORF1ab/nsp13379A379AgcCgcA118B.1.4290.000024
ORF1ab/nsp13379A379TGccAcc1717AY.40.000026
ORF1ab/nsp13379A379AgcCgcT1717AY.46.60.001228
ORF1ab/nsp13379A379SGccTcc1616AY.1130.002278
ORF1ab/nsp13379A379AgcCgcT1616B.1.1.5190.000635
ORF1ab/nsp13379A379AgcCgcT1616B.1.177.60.015625
ORF1ab/nsp13379A379VgCcgTc1616B.1.2340.002111
ORF1ab/nsp13379A379AgcCgcT1515AY.1090.011095
ORF1ab/nsp13379A379AgcCgcT1515AY.4.20.000325
ORF1ab/nsp13379A379SGccTcc1515B.1.2400.003233
ORF1ab/nsp13379A379SGccTcc1414AY.440.000085
ORF1ab/nsp13379A379SGccTcc1313AY.30.000129
ORF1ab/nsp13379A379SGccTcc1313B.10.000119
ORF1ab/nsp13379A379AgcCgcT1313B.1.177.40.002744
ORF1ab/nsp13379A379AgcCgcT1212AY.1000.000552
ORF1ab/nsp13379A379AgcCgcT1212AY.200.000466
ORF1ab/nsp13379A379SGccTcc1212AY.290.000189
ORF1ab/nsp13379A379TGccAcc1212B.1.1.70.000011
ORF1ab/nsp13379A379AgcCgcT1011AY.1190.000353
ORF1ab/nsp13379A379AgcCgcA111AY.1190.000035
ORF1ab/nsp13379A379AgcCgcT1111AY.23.10.004591
ORF1ab/nsp13379A379VgCcgTc1111B.1.36.380.018062
ORF1ab/nsp13379A379AgcCgcT1010AY.290.000158
ORF1ab/nsp13379A379SGccTcc1010AY.40.000016
ORF1ab/nsp13379A379VgCcgTc1010B.1.1600.000312
ORF1ab/nsp13379A379VgCcgTc1010B.1.4290.000235
ORF1ab/nsp13379A379AgcCgcT1010P.1.170.001618
ORF1ab/nsp13379A379AgcCgcT99AY.1170.000761
ORF1ab/nsp13379A379VgCcgTc99AY.290.000142
ORF1ab/nsp13379A379VgCcgTc99B.1.10.000163
ORF1ab/nsp13379A379VgCcgTc99P.10.000142
ORF1ab/nsp13379A379VgCcgTc88AY.440.000049
ORF1ab/nsp13379A379AgcCgcT88AY.46.40.001316
ORF1ab/nsp13379A379AgcCgcT88AY.610.000838
ORF1ab/nsp13379A379AgcCgcT88B.1.177.870.005822
ORF1ab/nsp13379A379AgcCgcT88B.1.5750.002427
ORF1ab/nsp13379A379VgCcgTc77AY.200.000272
ORF1ab/nsp13379A379AgcCgcT77AY.330.000467
ORF1ab/nsp13379A379SGccTcc77AY.39.10.000277
ORF1ab/nsp13379A379AgcCgcT77B.1.1.440.016867
ORF1ab/nsp13379A379AgcCgcA67B.1.177.430.008863
ORF1ab/nsp13379A379AgcCgcT17B.1.177.430.001477
ORF1ab/nsp13379A379AgcCgcT77B.1.2580.000466
ORF1ab/nsp13379A379AgcCgcT77B.1.4230.071429
ORF1ab/nsp13379A379AgcCgcT77B.1.5680.007778
ORF1ab/nsp13379A379delGCC---66All0.000001
ORF1ab/nsp13379A379VgCcgTc66AY.1030.000037
ORF1ab/nsp13379A379TGccAcc66AY.1190.000212
ORF1ab/nsp13379A379VgCcgTc66AY.1190.000212
ORF1ab/nsp13379A379VgCcgTc66AY.30.00006
ORF1ab/nsp13379A379SGccTcc66AY.390.000148
ORF1ab/nsp13379A379AgcCgcT66AY.420.000241
ORF1ab/nsp13379A379TGccAcc66B.10.000055
ORF1ab/nsp13379A379SGccTcc66B.1.1.2220.001224
ORF1ab/nsp13379A379VgCcgTc66B.1.1.2220.001224
ORF1ab/nsp13379A379AgcCgcT66B.1.1.2980.005172
ORF1ab/nsp13379A379VgCcgTc66B.1.1770.000079
ORF1ab/nsp13379A379SGccTcc66B.1.20.000053
ORF1ab/nsp13379A379AgcCgcT66B.1.4990.006303
ORF1ab/nsp13379A379AgcCgcT66B.1.5960.000523
ORF1ab/nsp13379A379AgcCgcT66B.1.617.10.000774
ORF1ab/nsp13379A379AgcCgcT66P.20.00112
ORF1ab/nsp13379A379SGccTcc55AY.16.10.00235
ORF1ab/nsp13379A379SGccTcc55AY.190.005701
ORF1ab/nsp13379A379AgcCgcT55AY.370.00158
ORF1ab/nsp13379A379VgCcgTc55AY.390.000124
ORF1ab/nsp13379A379AgcCgcT55AY.400.004822
ORF1ab/nsp13379A379AgcCgcT45AY.450.000487
ORF1ab/nsp13379A379AgcCgcA15AY.450.000122
ORF1ab/nsp13379A379AgcCgcT55AY.60.000206
ORF1ab/nsp13379A379SGccTcc55AY.620.002179
ORF1ab/nsp13379A379AgcCgcT55AY.750.00028
ORF1ab/nsp13379A379AgcCgcT55AY.850.002136
ORF1ab/nsp13379A379AgcCgcT55AY.98.10.000242
ORF1ab/nsp13379A379AgcCgcA55B.1.1.1760.002197
ORF1ab/nsp13379A379AgcCgcT55B.1.1.2140.000277
ORF1ab/nsp13379A379AgcCgcT55B.1.1.4160.004525
ORF1ab/nsp13379A379TGccAcc55B.1.1.5190.000199
ORF1ab/nsp13379A379TGccAcc55B.1.177.860.000917
ORF1ab/nsp13379A379VgCcgTc55B.1.5950.001305
ORF1ab/nsp13379A379AgcCgcT55B.1.5970.023148
ORF1ab/nsp13379A379del1gcCgc-44All0.000001
ORF1ab/nsp13379A379AgcCgcT44AY.10.001583
ORF1ab/nsp13379A379AgcCgcT44AY.1180.000251
ORF1ab/nsp13379A379AgcCgcT44AY.1210.000541
ORF1ab/nsp13379A379AgcCgcT44AY.29.10.000882
ORF1ab/nsp13379A379TGccAcc44AY.30.00004
ORF1ab/nsp13379A379AgcCgcT44AY.470.000124
ORF1ab/nsp13379A379VgCcgTc44AY.750.000224
ORF1ab/nsp13379A379AgcCgcT44AY.99.20.000369
ORF1ab/nsp13379A379AgcCgcT44B.1.1.3180.001207
ORF1ab/nsp13379A379VgCcgTc44B.1.1.3250.102564
ORF1ab/nsp13379A379VgCcgTc44B.1.1.370.000771
ORF1ab/nsp13379A379AgcCgcT44B.1.1310.035088
ORF1ab/nsp13379A379AgcCgcT44B.1.177.540.002426
ORF1ab/nsp13379A379AgcCgcT44B.1.258.170.000416
ORF1ab/nsp13379A379AgcCgcT44B.1.258.30.0067
ORF1ab/nsp13379A379AgcCgcT44B.1.3500.01173
ORF1ab/nsp13379A379AgcCgcT44B.1.36.80.004
ORF1ab/nsp13379A379AgcCgcT44B.1.4090.003125
ORF1ab/nsp13379A379AgcCgcT44B.1.4970.001259
ORF1ab/nsp13379A379VgCcgTc44B.1.5960.000349
ORF1ab/nsp13379A379AgcCgcA24P.1.140.000096
ORF1ab/nsp13379A379AgcCgcT24P.1.140.000096
ORF1ab/nsp13379A379AgcCgcT44Q.80.00066
ORF1ab/nsp13379A379VgCcgTc33A.2.50.001497
ORF1ab/nsp13379A379SGccTcc33AY.100.00159
ORF1ab/nsp13379A379VgCcgTc33AY.1020.00008
ORF1ab/nsp13379A379VgCcgTc33AY.1180.000188
ORF1ab/nsp13379A379SGccTcc33AY.200.000117
ORF1ab/nsp13379A379VgCcgTc33AY.3.10.000256
ORF1ab/nsp13379A379AgcCgcT23AY.3.10.000171
ORF1ab/nsp13379A379AgcCgcA13AY.3.10.000085
ORF1ab/nsp13379A379SGccTcc33AY.380.001498
ORF1ab/nsp13379A379SGccTcc33AY.400.002893
ORF1ab/nsp13379A379TGccAcc33AY.470.000093
ORF1ab/nsp13379A379AgcCgcT33AY.50.000062
ORF1ab/nsp13379A379AgcCgcT33AY.75.10.000541
ORF1ab/nsp13379A379SGccTcc33B.1.10.000054
ORF1ab/nsp13379A379VgCcgTc33B.1.1.2140.000166
ORF1ab/nsp13379A379AgcCgcT33B.1.1.2220.000612
ORF1ab/nsp13379A379AgcCgcA33B.1.1.330.001263
ORF1ab/nsp13379A379VgCcgTc33B.1.1.5190.000119
ORF1ab/nsp13379A379delGCC---33B.1.1.70.000003
ORF1ab/nsp13379A379TGccAcc33B.1.177.200.004552
ORF1ab/nsp13379A379AgcCgcA23B.1.177.570.000562
ORF1ab/nsp13379A379AgcCgcT13B.1.177.570.000281
ORF1ab/nsp13379A379AgcCgcT33B.1.2210.000213
ORF1ab/nsp13379A379AgcCgcT33B.1.3110.000824
ORF1ab/nsp13379A379AgcCgcT23B.1.3510.000059
ORF1ab/nsp13379A379AgcCgcA13B.1.3510.00003
ORF1ab/nsp13379A379AgcCgcT33B.1.4270.000151
ORF1ab/nsp13379A379AgcCgcT33B.1.4280.003061
ORF1ab/nsp13379A379TGccAcc33B.1.617.20.000011
ORF1ab/nsp13379A379VgCcgTc33B.6.80.024793
ORF1ab/nsp13379A379AgcCgcT33P.60.009434
ORF1ab/nsp13379A379VgCcgTc33P.60.009434
ORF1ab/nsp13379A379SGccTcc22AY.1030.000012
ORF1ab/nsp13379A379SGccTcc22AY.1100.000225
ORF1ab/nsp13379A379AgcCgcA12AY.1160.000287
ORF1ab/nsp13379A379AgcCgcT12AY.1160.000287
ORF1ab/nsp13379A379SGccTcc22AY.1170.000169
ORF1ab/nsp13379A379VgCcgTc22AY.1170.000169
ORF1ab/nsp13379A379VgCcgTc22AY.1200.000074
ORF1ab/nsp13379A379AgcCgcT22AY.120.10.000642
ORF1ab/nsp13379A379AgcCgcT22AY.240.000862
ORF1ab/nsp13379A379AgcCgcT22AY.300.000791
ORF1ab/nsp13379A379SGccTcc22AY.330.000134
ORF1ab/nsp13379A379AgcCgcT22AY.380.000999
ORF1ab/nsp13379A379AgcCgcT22AY.39.10.000079
ORF1ab/nsp13379A379SGccTcc22AY.4.20.000043
ORF1ab/nsp13379A379TGccAcc22AY.4.20.000043
ORF1ab/nsp13379A379TGccAcc22AY.430.000009
ORF1ab/nsp13379A379AgcCgcT22AY.5.30.000675
ORF1ab/nsp13379A379SGccTcc22AY.5.40.000553
ORF1ab/nsp13379A379AgcCgcA12AY.5.40.000277
ORF1ab/nsp13379A379AgcCgcT12AY.5.40.000277
ORF1ab/nsp13379A379AgcCgcT22AY.530.000575
ORF1ab/nsp13379A379AgcCgcT22AY.540.000191
ORF1ab/nsp13379A379AgcCgcT22AY.7.10.000225
ORF1ab/nsp13379A379SGccTcc22AY.75.10.000361
ORF1ab/nsp13379A379AgcCgcT22AY.9.20.000073
ORF1ab/nsp13379A379SGccTcc22AY.980.000158
ORF1ab/nsp13379A379AgcCgcT22B.1.1.2050.007435
ORF1ab/nsp13379A379TGccAcc22B.1.1.2160.001781
ORF1ab/nsp13379A379SGccTcc22B.1.1.2160.001781
ORF1ab/nsp13379A379VgCcgTc22B.1.1.270.011299
ORF1ab/nsp13379A379SGccTcc22B.1.1.2790.002242
ORF1ab/nsp13379A379VgCcgTc22B.1.1.3060.000877
ORF1ab/nsp13379A379AgcCgcT22B.1.1.370.000386
ORF1ab/nsp13379A379AgcCgcT22B.1.1.3720.001377
ORF1ab/nsp13379A379AgcCgcT22B.1.1.460.008734
ORF1ab/nsp13379A379AgcCgcT22B.1.1.890.012121
ORF1ab/nsp13379A379TGccAcc22B.1.1080.011628
ORF1ab/nsp13379A379AgcCgcA12B.1.1570.002985
ORF1ab/nsp13379A379AgcCgcT12B.1.1570.002985
ORF1ab/nsp13379A379SGccTcc22B.1.1600.000062
ORF1ab/nsp13379A379VgCcgTc22B.1.177.210.000153
ORF1ab/nsp13379A379TGccAcc22B.1.177.540.001213
ORF1ab/nsp13379A379SGccTcc22B.1.177.600.000437
ORF1ab/nsp13379A379AgcCgcT22B.1.177.730.001133
ORF1ab/nsp13379A379AgcCgcT22B.1.177.810.000379
ORF1ab/nsp13379A379VgCcgTc22B.1.214.20.001199
ORF1ab/nsp13379A379AgcCgcT22B.1.2390.002442
ORF1ab/nsp13379A379VgCcgTc22B.1.2580.000133
ORF1ab/nsp13379A379AgcCgcT22B.1.258.110.000793
ORF1ab/nsp13379A379VgCcgTc22B.1.351.50.001199
ORF1ab/nsp13379A379TGccAcc22B.1.36.160.002849
ORF1ab/nsp13379A379AgcCgcT22B.1.36.290.001035
ORF1ab/nsp13379A379AgcCgcA22B.1.3620.003082
ORF1ab/nsp13379A379AgcCgcT22B.1.3670.001585
ORF1ab/nsp13379A379AgcCgcT22B.1.3990.003868
ORF1ab/nsp13379A379AgcCgcT22B.1.4040.002604
ORF1ab/nsp13379A379VgCcgTc22B.1.4510.016393
ORF1ab/nsp13379A379VgCcgTc22B.1.5880.00182
ORF1ab/nsp13379A379SGccTcc22B.1.6000.011696
ORF1ab/nsp13379A379VgCcgTc22B.1.617.10.000258
ORF1ab/nsp13379A379AgcCgcT22B.1.619.10.001283
ORF1ab/nsp13379A379SGccTcc22B.1.6210.000177
ORF1ab/nsp13379A379AgcCgcT22B.1.6250.004706
ORF1ab/nsp13379A379VgCcgTc22D.20.00015
ORF1ab/nsp13379A379AgcCgcT22D.20.00015
ORF1ab/nsp13379A379VgCcgTc22P.20.000373
ORF1ab/nsp13379A379SGccTcc22R.10.00018
ORF1ab/nsp13379A379VgCcgTc11A0.000387
ORF1ab/nsp13379A379del2GCC--T11A0.000387
ORF1ab/nsp13379A379AgcCgcT11A0.000387
ORF1ab/nsp13379A379AgcCgcT11A.290.005319
ORF1ab/nsp13379A379AgcCgcT11AD.20.000219
ORF1ab/nsp13379A379PGccCcc11All0
ORF1ab/nsp13379A379NGCCAAT11All0
ORF1ab/nsp13379A379del2GCC--T11All0
ORF1ab/nsp13379A379DgCcgAc11All0
ORF1ab/nsp13379A379AgcCgcT11AY.1010.00049
ORF1ab/nsp13379A379TGccAcc11AY.1030.000006
ORF1ab/nsp13379A379SGccTcc11AY.1080.001103
ORF1ab/nsp13379A379SGccTcc11AY.110.001339
ORF1ab/nsp13379A379AgcCgcT11AY.1100.000113
ORF1ab/nsp13379A379SGccTcc11AY.1160.000287
ORF1ab/nsp13379A379TGccAcc11AY.1170.000085
ORF1ab/nsp13379A379SGccTcc11AY.1180.000063
ORF1ab/nsp13379A379VgCcgTc11AY.120.000316
ORF1ab/nsp13379A379delGCC---11AY.1200.000037
ORF1ab/nsp13379A379SGccTcc11AY.1200.000037
ORF1ab/nsp13379A379SGccTcc11AY.1210.000135
ORF1ab/nsp13379A379AgcCgcT11AY.130.000161
ORF1ab/nsp13379A379AgcCgcA11AY.140.000088
ORF1ab/nsp13379A379AgcCgcT11AY.16.10.00047
ORF1ab/nsp13379A379AgcCgcT11AY.210.001898
ORF1ab/nsp13379A379SGccTcc11AY.230.00007
ORF1ab/nsp13379A379VgCcgTc11AY.230.00007
ORF1ab/nsp13379A379VgCcgTc11AY.260.000028
ORF1ab/nsp13379A379AgcCgcT11AY.270.000065
ORF1ab/nsp13379A379VgCcgTc11AY.320.000532
ORF1ab/nsp13379A379VgCcgTc11AY.340.000097
ORF1ab/nsp13379A379AgcCgcT11AY.350.000233
ORF1ab/nsp13379A379AgcCgcT11AY.360.000148
ORF1ab/nsp13379A379TGccAcc11AY.390.000025
ORF1ab/nsp13379A379AgcCgcT11AY.4.40.000409
ORF1ab/nsp13379A379delGCC---11AY.4.50.000107
ORF1ab/nsp13379A379VgCcgTc11AY.4.50.000107
ORF1ab/nsp13379A379TGccAcc11AY.4.50.000107
ORF1ab/nsp13379A379AgcCgcA11AY.4.50.000107
ORF1ab/nsp13379A379SGccTcc11AY.410.000294
ORF1ab/nsp13379A379TGccAcc11AY.440.000006
ORF1ab/nsp13379A379NGCCAAT11AY.440.000006
ORF1ab/nsp13379A379DgCcgAc11AY.440.000006
ORF1ab/nsp13379A379VgCcgTc11AY.460.000104
ORF1ab/nsp13379A379SGccTcc11AY.460.000104
ORF1ab/nsp13379A379VgCcgTc11AY.46.20.000635
ORF1ab/nsp13379A379SGccTcc11AY.46.20.000635
ORF1ab/nsp13379A379AgcCgcT11AY.46.30.000934
ORF1ab/nsp13379A379SGccTcc11AY.46.40.000165
ORF1ab/nsp13379A379TGccAcc11AY.46.50.000198
ORF1ab/nsp13379A379VgCcgTc11AY.46.60.000072
ORF1ab/nsp13379A379VgCcgTc11AY.470.000031
ORF1ab/nsp13379A379SGccTcc11AY.470.000031
ORF1ab/nsp13379A379VgCcgTc11AY.540.000095
ORF1ab/nsp13379A379SGccTcc11AY.550.000917
ORF1ab/nsp13379A379AgcCgcT11AY.550.000917
ORF1ab/nsp13379A379AgcCgcT11AY.580.000907
ORF1ab/nsp13379A379AgcCgcT11AY.590.00053
ORF1ab/nsp13379A379SGccTcc11AY.590.00053
ORF1ab/nsp13379A379VgCcgTc11AY.60.000041
ORF1ab/nsp13379A379SGccTcc11AY.610.000105
ORF1ab/nsp13379A379AgcCgcT11AY.620.000436
ORF1ab/nsp13379A379AgcCgcT11AY.640.000595
ORF1ab/nsp13379A379AgcCgcT11AY.650.000533
ORF1ab/nsp13379A379AgcCgcT11AY.670.000464
ORF1ab/nsp13379A379AgcCgcT11AY.700.000209
ORF1ab/nsp13379A379SGccTcc11AY.710.000475
ORF1ab/nsp13379A379AgcCgcT11AY.720.001361
ORF1ab/nsp13379A379SGccTcc11AY.750.000056
ORF1ab/nsp13379A379SGccTcc11AY.880.000884
ORF1ab/nsp13379A379AgcCgcT11AY.880.000884
ORF1ab/nsp13379A379VgCcgTc11AY.90.000068
ORF1ab/nsp13379A379VgCcgTc11AY.9.20.000037
ORF1ab/nsp13379A379VgCcgTc11AY.900.000684
ORF1ab/nsp13379A379AgcCgcT11AY.920.000287
ORF1ab/nsp13379A379VgCcgTc11AY.930.000273
ORF1ab/nsp13379A379AgcCgcT11AY.930.000273
ORF1ab/nsp13379A379SGccTcc11AY.930.000273
ORF1ab/nsp13379A379AgcCgcT11AY.980.000079
ORF1ab/nsp13379A379VgCcgTc11AY.98.10.000048
ORF1ab/nsp13379A379VgCcgTc11AY.99.20.000092
ORF1ab/nsp13379A379VgCcgTc11AZ.20.000821
ORF1ab/nsp13379A379VgCcgTc11B0.000128
ORF1ab/nsp13379A379TGccAcc11B.1.10.000018
ORF1ab/nsp13379A379AgcCgcT11B.1.1.1170.009709
ORF1ab/nsp13379A379AgcCgcT11B.1.1.130.035714
ORF1ab/nsp13379A379AgcCgcA11B.1.1.1620.029412
ORF1ab/nsp13379A379AgcCgcT11B.1.1.1710.003676
ORF1ab/nsp13379A379AgcCgcT11B.1.1.1740.003378
ORF1ab/nsp13379A379AgcCgcA11B.1.1.1930.111111
ORF1ab/nsp13379A379AgcCgcT11B.1.1.2070.001182
ORF1ab/nsp13379A379AgcCgcT11B.1.1.2160.00089
ORF1ab/nsp13379A379AgcCgcT11B.1.1.2630.001558
ORF1ab/nsp13379A379AgcCgcT11B.1.1.2840.000107
ORF1ab/nsp13379A379AgcCgcT11B.1.1.2970.002237
ORF1ab/nsp13379A379TGccAcc11B.1.1.3110.000358
ORF1ab/nsp13379A379TGccAcc11B.1.1.3160.000925
ORF1ab/nsp13379A379AgcCgcT11B.1.1.3170.000412
ORF1ab/nsp13379A379VgCcgTc11B.1.1.3480.000796
ORF1ab/nsp13379A379TGccAcc11B.1.1.370.000193
ORF1ab/nsp13379A379AgcCgcT11B.1.1.3840.02381
ORF1ab/nsp13379A379AgcCgcT11B.1.1.390.00051
ORF1ab/nsp13379A379TGccAcc11B.1.1.4090.002833
ORF1ab/nsp13379A379SGccTcc11B.1.1.4330.001425
ORF1ab/nsp13379A379AgcCgcA11B.1.1.4850.016667
ORF1ab/nsp13379A379AgcCgcT11B.1.1.5230.001563
ORF1ab/nsp13379A379del1gcCgc-11B.1.1.70.000001
ORF1ab/nsp13379A379AgcCgcT11B.1.1.80.003584
ORF1ab/nsp13379A379AgcCgcT11B.1.1110.001175
ORF1ab/nsp13379A379AgcCgcT11B.1.130.002375
ORF1ab/nsp13379A379VgCcgTc11B.1.1400.018868
ORF1ab/nsp13379A379VgCcgTc11B.1.1430.021277
ORF1ab/nsp13379A379VgCcgTc11B.1.160.180.007299
ORF1ab/nsp13379A379SGccTcc11B.1.160.260.002421
ORF1ab/nsp13379A379AgcCgcT11B.1.160.310.008065
ORF1ab/nsp13379A379VgCcgTc11B.1.160.70.002079
ORF1ab/nsp13379A379SGccTcc11B.1.1770.000013
ORF1ab/nsp13379A379AgcCgcT11B.1.177.100.000878
ORF1ab/nsp13379A379AgcCgcT11B.1.177.120.000152
ORF1ab/nsp13379A379SGccTcc11B.1.177.210.000076
ORF1ab/nsp13379A379AgcCgcT11B.1.177.210.000076
ORF1ab/nsp13379A379VgCcgTc11B.1.177.230.003236
ORF1ab/nsp13379A379AgcCgcG11B.1.177.440.000519
ORF1ab/nsp13379A379AgcCgcG11B.1.177.600.000218
ORF1ab/nsp13379A379AgcCgcT11B.1.177.650.000665
ORF1ab/nsp13379A379AgcCgcT11B.1.177.860.000183
ORF1ab/nsp13379A379VgCcgTc11B.1.1890.004292
ORF1ab/nsp13379A379del1gcCgc-11B.1.20.000009
ORF1ab/nsp13379A379VgCcgTc11B.1.2140.003663
ORF1ab/nsp13379A379SGccTcc11B.1.2140.003663
ORF1ab/nsp13379A379AgcCgcT11B.1.214.20.0006
ORF1ab/nsp13379A379AgcCgcT11B.1.221.20.004016
ORF1ab/nsp13379A379AgcCgcT11B.1.2220.001692
ORF1ab/nsp13379A379AgcCgcT11B.1.2340.000132
ORF1ab/nsp13379A379VgCcgTc11B.1.2430.00007
ORF1ab/nsp13379A379VgCcgTc11B.1.258.170.000104
ORF1ab/nsp13379A379AgcCgcT11B.1.2650.001271
ORF1ab/nsp13379A379AgcCgcT11B.1.30.002618
ORF1ab/nsp13379A379TGccAcc11B.1.3110.000275
ORF1ab/nsp13379A379SGccTcc11B.1.3510.00003
ORF1ab/nsp13379A379AgcCgcT11B.1.351.50.0006
ORF1ab/nsp13379A379AgcCgcT11B.1.3560.001727
ORF1ab/nsp13379A379AgcCgcT11B.1.36.170.000494
ORF1ab/nsp13379A379AgcCgcT11B.1.36.190.009259
ORF1ab/nsp13379A379AgcCgcT11B.1.36.70.004
ORF1ab/nsp13379A379TGccAcc11B.1.3660.004878
ORF1ab/nsp13379A379VgCcgTc11B.1.3690.000285
ORF1ab/nsp13379A379AgcCgcT11B.1.3690.000285
ORF1ab/nsp13379A379del1gcCgc-11B.1.4000.000429
ORF1ab/nsp13379A379AgcCgcT11B.1.4080.00369
ORF1ab/nsp13379A379AgcCgcT11B.1.4160.001269
ORF1ab/nsp13379A379TGccAcc11B.1.4290.000024
ORF1ab/nsp13379A379AgcCgcT11B.1.4330.003195
ORF1ab/nsp13379A379VgCcgTc11B.1.4380.006536
ORF1ab/nsp13379A379AgcCgcT11B.1.438.10.000107
ORF1ab/nsp13379A379VgCcgTc11B.1.438.10.000107
ORF1ab/nsp13379A379VgCcgTc11B.1.4410.009615
ORF1ab/nsp13379A379AgcCgcG11B.1.466.20.000391
ORF1ab/nsp13379A379AgcCgcT11B.1.5230.002451
ORF1ab/nsp13379A379AgcCgcT11B.1.5250.000113
ORF1ab/nsp13379A379VgCcgTc11B.1.5250.000113
ORF1ab/nsp13379A379SGccTcc11B.1.5260.000024
ORF1ab/nsp13379A379VgCcgTc11B.1.5330.009615
ORF1ab/nsp13379A379VgCcgTc11B.1.5380.008065
ORF1ab/nsp13379A379SGccTcc11B.1.5500.013699
ORF1ab/nsp13379A379AgcCgcT11B.1.5540.004405
ORF1ab/nsp13379A379AgcCgcT11B.1.5610.000397
ORF1ab/nsp13379A379AgcCgcT11B.1.5640.000426
ORF1ab/nsp13379A379AgcCgcT11B.1.5740.002151
ORF1ab/nsp13379A379AgcCgcT11B.1.5760.000907
ORF1ab/nsp13379A379AgcCgcT11B.1.5820.000491
ORF1ab/nsp13379A379VgCcgTc11B.1.5820.000491
ORF1ab/nsp13379A379SGccTcc11B.1.5950.000261
ORF1ab/nsp13379A379TGccAcc11B.1.5960.000087
ORF1ab/nsp13379A379PGccCcc11B.1.5960.000087
ORF1ab/nsp13379A379AgcCgcT11B.1.596.10.009346
ORF1ab/nsp13379A379VgCcgTc11B.1.596.10.009346
ORF1ab/nsp13379A379AgcCgcT11B.1.6050.005952
ORF1ab/nsp13379A379TGccAcc11B.1.6050.005952
ORF1ab/nsp13379A379AgcCgcT11B.1.6090.000479
ORF1ab/nsp13379A379VgCcgTc11B.1.6090.000479
ORF1ab/nsp13379A379SGccTcc11B.1.617.10.000129
ORF1ab/nsp13379A379del1gcCgc-11B.1.617.20.000004
ORF1ab/nsp13379A379AgcCgcT11B.1.6370.000073
ORF1ab/nsp13379A379VgCcgTc11B.400.000364
ORF1ab/nsp13379A379AgcCgcT11B.550.00295
ORF1ab/nsp13379A379SGccTcc11C.360.000911
ORF1ab/nsp13379A379AgcCgcT11D.50.004975
ORF1ab/nsp13379A379delGCC---11P.10.000016
ORF1ab/nsp13379A379VgCcgTc11P.1.10.000318
ORF1ab/nsp13379A379AgcCgcT11P.1.120.000484
ORF1ab/nsp13379A379SGccTcc11P.1.70.000319
ORF1ab/nsp13379A379VgCcgTc11P.1.70.000319
ORF1ab/nsp13379A379AgcCgcT11Q.10.000126
ORF1ab/nsp13379A379AgcCgcT11Q.40.000455
ORF1ab/nsp13379A379AgcCgcT11Q.70.001111
ORF1ab/nsp13379A379VgCcgTc11Q.80.000165
ORF1ab/nsp13379A379VgCcgTc11R.10.00009