CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 368

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13368A368VA5692VnonsyngCagTa67126712117338-17340
ORF1ab/nsp13368A368SA5692SnonsynGcaTca24372437117338-17340
ORF1ab/nsp13368A368TA5692TnonsynGcaAca620620117338-17340
ORF1ab/nsp13368A368AA5692AsyngcAgcG2321170.5043117338-17340
ORF1ab/nsp13368A368AA5692AsyngcAgcT2321080.46551717338-17340
ORF1ab/nsp13368A368AA5692AsyngcAgcC23270.030172417338-17340
ORF1ab/nsp13368A368PA5692PnonsynGcaCca1616117338-17340
ORF1ab/nsp13368A368LA5692LnonsynGCaTTa1313117338-17340
ORF1ab/nsp13368A368delA5692deldelGCA---55117338-17340
ORF1ab/nsp13368A368GA5692GnonsyngCagGa55117338-17340
ORF1ab/nsp13368A368del1A5692del1delgcAgc-320.66666717338-17340
ORF1ab/nsp13368A368del1A5692del1delgCag-a310.33333317338-17340
ORF1ab/nsp13368A368EA5692EnonsyngCagAa11117338-17340

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13368A368VgCagTa67126712All0.001284
ORF1ab/nsp13368A368SGcaTca24372437All0.000466
ORF1ab/nsp13368A368VgCagTa11081108AY.40.001725
ORF1ab/nsp13368A368TGcaAca620620All0.000119
ORF1ab/nsp13368A368VgCagTa608608P.30.969697
ORF1ab/nsp13368A368VgCagTa528528AY.30.005252
ORF1ab/nsp13368A368VgCagTa491491AY.4.20.010649
ORF1ab/nsp13368A368SGcaTca466466B.1.617.10.060098
ORF1ab/nsp13368A368VgCagTa359359B.1.1.70.000321
ORF1ab/nsp13368A368TGcaAca345345B.1.617.20.001299
ORF1ab/nsp13368A368VgCagTa278278B.1.5950.072547
ORF1ab/nsp13368A368SGcaTca258258AY.390.006376
ORF1ab/nsp13368A368VgCagTa256256AY.250.00154
ORF1ab/nsp13368A368VgCagTa250250B.1.617.20.000941
ORF1ab/nsp13368A368AgcAgcG117232All0.000022
ORF1ab/nsp13368A368AgcAgcT108232All0.000021
ORF1ab/nsp13368A368AgcAgcC7232All0.000001
ORF1ab/nsp13368A368SGcaTca215215B.1.1.70.000192
ORF1ab/nsp13368A368SGcaTca202202AY.40.000314
ORF1ab/nsp13368A368VgCagTa163163AY.520.132736
ORF1ab/nsp13368A368VgCagTa160160AY.430.000709
ORF1ab/nsp13368A368SGcaTca148148AY.1030.000919
ORF1ab/nsp13368A368SGcaTca133133B.1.617.20.000501
ORF1ab/nsp13368A368VgCagTa131131B.1.20.001154
ORF1ab/nsp13368A368VgCagTa127127AY.230.008858
ORF1ab/nsp13368A368VgCagTa127127AY.440.000773
ORF1ab/nsp13368A368VgCagTa127127P.10.002001
ORF1ab/nsp13368A368SGcaTca121121AY.50.002499
ORF1ab/nsp13368A368VgCagTa104104B.1.438.10.011155
ORF1ab/nsp13368A368VgCagTa9797AY.1060.032485
ORF1ab/nsp13368A368VgCagTa9393B.10.000852
ORF1ab/nsp13368A368SGcaTca9292AY.250.000553
ORF1ab/nsp13368A368VgCagTa8282AY.1200.003049
ORF1ab/nsp13368A368SGcaTca8181B.1.5960.007058
ORF1ab/nsp13368A368SGcaTca7474AY.1190.002613
ORF1ab/nsp13368A368VgCagTa6767AY.1030.000416
ORF1ab/nsp13368A368VgCagTa6767B.1.4220.054427
ORF1ab/nsp13368A368VgCagTa6666AY.46.40.010857
ORF1ab/nsp13368A368VgCagTa6666B.1.1.1890.099849
ORF1ab/nsp13368A368VgCagTa5454B.1.5260.001269
ORF1ab/nsp13368A368VgCagTa5252AY.290.00082
ORF1ab/nsp13368A368AgcAgcT4952AY.40.000076
ORF1ab/nsp13368A368AgcAgcG352AY.40.000005
ORF1ab/nsp13368A368VgCagTa4949AY.200.001904
ORF1ab/nsp13368A368SGcaTca4747B.1.1770.000619
ORF1ab/nsp13368A368VgCagTa4545P.1.140.002151
ORF1ab/nsp13368A368VgCagTa4242B.1.4290.000988
ORF1ab/nsp13368A368SGcaTca4141AY.430.000182
ORF1ab/nsp13368A368TGcaAca3838AY.460.003955
ORF1ab/nsp13368A368VgCagTa3737B.1.10.000671
ORF1ab/nsp13368A368SGcaTca3535AY.4.20.000759
ORF1ab/nsp13368A368VgCagTa3535B.1.2430.002435
ORF1ab/nsp13368A368VgCagTa3535B.1.5750.010619
ORF1ab/nsp13368A368VgCagTa3535B.1.617.10.004514
ORF1ab/nsp13368A368VgCagTa3535B.1.6210.003098
ORF1ab/nsp13368A368TGcaAca3333B.1.1.70.00003
ORF1ab/nsp13368A368VgCagTa3232B.1.6370.002338
ORF1ab/nsp13368A368SGcaTca3030AY.1020.000795
ORF1ab/nsp13368A368VgCagTa2929A.270.048013
ORF1ab/nsp13368A368SGcaTca2929B.10.000266
ORF1ab/nsp13368A368VgCagTa2828D.20.002101
ORF1ab/nsp13368A368AgcAgcG2727AY.250.000162
ORF1ab/nsp13368A368VgCagTa2727AY.260.000764
ORF1ab/nsp13368A368SGcaTca2727AY.270.001747
ORF1ab/nsp13368A368VgCagTa2525AY.1020.000663
ORF1ab/nsp13368A368SGcaTca2424AY.440.000146
ORF1ab/nsp13368A368VgCagTa2222AY.330.001469
ORF1ab/nsp13368A368SGcaTca2222AY.46.60.001589
ORF1ab/nsp13368A368VgCagTa2222B.1.1770.00029
ORF1ab/nsp13368A368VgCagTa2121AY.390.000519
ORF1ab/nsp13368A368TGcaAca2121AY.40.000033
ORF1ab/nsp13368A368SGcaTca2121B.1.1.500.014257
ORF1ab/nsp13368A368TGcaAca2121B.1.20.000185
ORF1ab/nsp13368A368VgCagTa2121B.1.4270.00106
ORF1ab/nsp13368A368TGcaAca2020AY.4.20.000434
ORF1ab/nsp13368A368SGcaTca2020AY.610.002096
ORF1ab/nsp13368A368VgCagTa1919B.1.1.2220.003876
ORF1ab/nsp13368A368SGcaTca1818B.1.10.000327
ORF1ab/nsp13368A368VgCagTa1717AY.1190.0006
ORF1ab/nsp13368A368AgcAgcT1717B.1.4270.000858
ORF1ab/nsp13368A368PGcaCca1616All0.000003
ORF1ab/nsp13368A368SGcaTca1616AY.1080.017641
ORF1ab/nsp13368A368VgCagTa1616AY.420.000644
ORF1ab/nsp13368A368AgcAgcG916B.1.1.70.000008
ORF1ab/nsp13368A368AgcAgcT716B.1.1.70.000006
ORF1ab/nsp13368A368VgCagTa1515AY.1180.00094
ORF1ab/nsp13368A368VgCagTa1515AY.9.20.000551
ORF1ab/nsp13368A368VgCagTa1515B.1.1.5190.000596
ORF1ab/nsp13368A368TGcaAca1414AY.430.000062
ORF1ab/nsp13368A368VgCagTa1414B.1.2210.000994
ORF1ab/nsp13368A368TGcaAca1414C.370.001625
ORF1ab/nsp13368A368SGcaTca1414P.40.053232
ORF1ab/nsp13368A368LGCaTTa1313All0.000002
ORF1ab/nsp13368A368SGcaTca1313AY.1160.003728
ORF1ab/nsp13368A368VgCagTa1313AY.4.50.001397
ORF1ab/nsp13368A368VgCagTa1313AY.450.001582
ORF1ab/nsp13368A368TGcaAca1313B.1.1.2250.093525
ORF1ab/nsp13368A368AgcAgcG1313B.1.1600.000405
ORF1ab/nsp13368A368VgCagTa1313B.1.177.180.015081
ORF1ab/nsp13368A368VgCagTa1313B.1.258.170.001352
ORF1ab/nsp13368A368VgCagTa1212A.2.50.005988
ORF1ab/nsp13368A368VgCagTa1212AY.460.001249
ORF1ab/nsp13368A368VgCagTa1212AY.60.000494
ORF1ab/nsp13368A368TGcaAca1212B.10.00011
ORF1ab/nsp13368A368VgCagTa1212B.1.1.500.008147
ORF1ab/nsp13368A368SGcaTca1212B.1.20.000106
ORF1ab/nsp13368A368VgCagTa1212B.1.5250.001358
ORF1ab/nsp13368A368SGcaTca1212M.21
ORF1ab/nsp13368A368LGCaTTa1111AY.40.000017
ORF1ab/nsp13368A368SGcaTca1111B.1.2340.001451
ORF1ab/nsp13368A368VgCagTa1111B.1.360.001605
ORF1ab/nsp13368A368AgcAgcT610AY.440.000037
ORF1ab/nsp13368A368AgcAgcG410AY.440.000024
ORF1ab/nsp13368A368VgCagTa1010AY.46.60.000722
ORF1ab/nsp13368A368VgCagTa1010AY.50.000206
ORF1ab/nsp13368A368VgCagTa1010B.1.4260.010091
ORF1ab/nsp13368A368AgcAgcG1010C.370.001161
ORF1ab/nsp13368A368VgCagTa1010P.1.10.003177
ORF1ab/nsp13368A368AgcAgcG1010P.20.001866
ORF1ab/nsp13368A368VgCagTa99AY.1000.000414
ORF1ab/nsp13368A368SGcaTca99AY.200.00035
ORF1ab/nsp13368A368VgCagTa99AY.750.000504
ORF1ab/nsp13368A368VgCagTa99AY.90.000608
ORF1ab/nsp13368A368VgCagTa99B.1.1.700.00307
ORF1ab/nsp13368A368VgCagTa99B.1.3110.002471
ORF1ab/nsp13368A368VgCagTa99B.1.3510.000268
ORF1ab/nsp13368A368AgcAgcG89B.1.617.20.00003
ORF1ab/nsp13368A368AgcAgcT19B.1.617.20.000004
ORF1ab/nsp13368A368VgCagTa88AY.39.10.000317
ORF1ab/nsp13368A368VgCagTa88AY.610.000838
ORF1ab/nsp13368A368SGcaTca88P.10.000126
ORF1ab/nsp13368A368AgcAgcG77AY.430.000031
ORF1ab/nsp13368A368VgCagTa77AY.470.000218
ORF1ab/nsp13368A368VgCagTa77AZ.20.005747
ORF1ab/nsp13368A368VgCagTa77B.1.1.3180.002112
ORF1ab/nsp13368A368TGcaAca77B.1.1.5190.000278
ORF1ab/nsp13368A368TGcaAca77B.1.4290.000165
ORF1ab/nsp13368A368TGcaAca77B.1.5260.000165
ORF1ab/nsp13368A368VgCagTa77B.1.5960.00061
ORF1ab/nsp13368A368VgCagTa77C.36.30.003971
ORF1ab/nsp13368A368SGcaTca66AY.290.000095
ORF1ab/nsp13368A368AgcAgcG66AY.9.10.000502
ORF1ab/nsp13368A368AgcAgcT66B.1.1.5190.000238
ORF1ab/nsp13368A368SGcaTca66B.1.360.000875
ORF1ab/nsp13368A368PGcaCca66B.1.36.360.003612
ORF1ab/nsp13368A368VgCagTa66B.1.36.80.006
ORF1ab/nsp13368A368VgCagTa66B.1.3970.029126
ORF1ab/nsp13368A368TGcaAca66P.10.000095
ORF1ab/nsp13368A368SGcaTca66P.1.40.005859
ORF1ab/nsp13368A368VgCagTa66Q.10.000758
ORF1ab/nsp13368A368VgCagTa55A.2.5.10.024038
ORF1ab/nsp13368A368GgCagGa55All0.000001
ORF1ab/nsp13368A368delGCA---55All0.000001
ORF1ab/nsp13368A368SGcaTca55AY.9.20.000184
ORF1ab/nsp13368A368SGcaTca55AY.980.000395
ORF1ab/nsp13368A368VgCagTa55AY.99.20.000461
ORF1ab/nsp13368A368VgCagTa55B.1.1.2140.000277
ORF1ab/nsp13368A368TGcaAca55B.1.1110.005875
ORF1ab/nsp13368A368SGcaTca55B.1.1600.000156
ORF1ab/nsp13368A368VgCagTa55B.1.2580.000333
ORF1ab/nsp13368A368VgCagTa55B.1.36.380.00821
ORF1ab/nsp13368A368SGcaTca55B.400.001821
ORF1ab/nsp13368A368SGcaTca55C.350.00387
ORF1ab/nsp13368A368VgCagTa44AY.1210.000541
ORF1ab/nsp13368A368SGcaTca44AY.1210.000541
ORF1ab/nsp13368A368VgCagTa44AY.140.000352
ORF1ab/nsp13368A368SGcaTca44AY.230.000279
ORF1ab/nsp13368A368SGcaTca44AY.260.000113
ORF1ab/nsp13368A368AgcAgcT44AY.260.000113
ORF1ab/nsp13368A368SGcaTca44AY.350.000932
ORF1ab/nsp13368A368TGcaAca44AY.440.000024
ORF1ab/nsp13368A368VgCagTa44AY.46.20.002541
ORF1ab/nsp13368A368VgCagTa44AY.46.30.003735
ORF1ab/nsp13368A368VgCagTa44AY.570.002625
ORF1ab/nsp13368A368SGcaTca44AY.60.000165
ORF1ab/nsp13368A368VgCagTa44AY.650.002132
ORF1ab/nsp13368A368SGcaTca44AY.7.10.000451
ORF1ab/nsp13368A368SGcaTca44AY.75.10.000721
ORF1ab/nsp13368A368VgCagTa44AY.9.10.000335
ORF1ab/nsp13368A368SGcaTca44AY.960.008299
ORF1ab/nsp13368A368VgCagTa44AY.980.000316
ORF1ab/nsp13368A368VgCagTa44B.1.1.3050.015444
ORF1ab/nsp13368A368VgCagTa44B.1.1.4160.00362
ORF1ab/nsp13368A368VgCagTa44B.1.1.580.021505
ORF1ab/nsp13368A368SGcaTca44B.1.177.200.00607
ORF1ab/nsp13368A368VgCagTa44B.1.177.810.000757
ORF1ab/nsp13368A368VgCagTa44B.1.2360.008214
ORF1ab/nsp13368A368VgCagTa44B.1.4530.012945
ORF1ab/nsp13368A368SGcaTca44B.1.5130.055556
ORF1ab/nsp13368A368SGcaTca44P.1.100.001078
ORF1ab/nsp13368A368SGcaTca44P.1.70.001277
ORF1ab/nsp13368A368VgCagTa44P.1.70.001277
ORF1ab/nsp13368A368del1gcAgc-23All0
ORF1ab/nsp13368A368del1gCag-a13All0
ORF1ab/nsp13368A368SGcaTca33AY.10.001187
ORF1ab/nsp13368A368AgcAgcT33AY.1000.000138
ORF1ab/nsp13368A368VgCagTa33AY.1110.000549
ORF1ab/nsp13368A368VgCagTa33AY.120.000948
ORF1ab/nsp13368A368SGcaTca33AY.1200.000112
ORF1ab/nsp13368A368SGcaTca33AY.16.10.00141
ORF1ab/nsp13368A368TGcaAca33AY.230.000209
ORF1ab/nsp13368A368VgCagTa33AY.29.10.000662
ORF1ab/nsp13368A368TGcaAca33AY.330.0002
ORF1ab/nsp13368A368VgCagTa33AY.360.000445
ORF1ab/nsp13368A368PGcaCca33AY.4.50.000322
ORF1ab/nsp13368A368SGcaTca33AY.420.000121
ORF1ab/nsp13368A368SGcaTca33AY.450.000365
ORF1ab/nsp13368A368SGcaTca33AY.460.000312
ORF1ab/nsp13368A368TGcaAca33AY.470.000093
ORF1ab/nsp13368A368SGcaTca33AY.530.000863
ORF1ab/nsp13368A368VgCagTa33AY.540.000286
ORF1ab/nsp13368A368SGcaTca33AY.650.001599
ORF1ab/nsp13368A368VgCagTa33AY.75.10.000541
ORF1ab/nsp13368A368SGcaTca33AY.780.004622
ORF1ab/nsp13368A368VgCagTa33B.1.1.1210.007282
ORF1ab/nsp13368A368SGcaTca33B.1.1.2160.002671
ORF1ab/nsp13368A368VgCagTa33B.1.1.2250.021583
ORF1ab/nsp13368A368VgCagTa33B.1.1600.000094
ORF1ab/nsp13368A368VgCagTa33B.1.177.600.000655
ORF1ab/nsp13368A368SGcaTca33B.1.2210.000213
ORF1ab/nsp13368A368VgCagTa33B.1.2340.000396
ORF1ab/nsp13368A368AgcAgcT33B.1.2390.003663
ORF1ab/nsp13368A368SGcaTca33B.1.3510.000089
ORF1ab/nsp13368A368AgcAgcC23B.1.3510.000059
ORF1ab/nsp13368A368AgcAgcG13B.1.3510.00003
ORF1ab/nsp13368A368SGcaTca33B.1.351.20.000908
ORF1ab/nsp13368A368VgCagTa33B.1.3660.014634
ORF1ab/nsp13368A368VgCagTa33B.1.3750.002459
ORF1ab/nsp13368A368SGcaTca33B.1.4660.069767
ORF1ab/nsp13368A368SGcaTca33B.1.466.20.001174
ORF1ab/nsp13368A368VgCagTa33B.1.5580.013699
ORF1ab/nsp13368A368SGcaTca33B.1.6210.000266
ORF1ab/nsp13368A368VgCagTa33C.160.003181
ORF1ab/nsp13368A368VgCagTa33C.370.000348
ORF1ab/nsp13368A368VgCagTa33P.1.120.001452
ORF1ab/nsp13368A368VgCagTa33P.20.00056
ORF1ab/nsp13368A368VgCagTa33R.10.00027
ORF1ab/nsp13368A368VgCagTa22AY.10.000791
ORF1ab/nsp13368A368VgCagTa22AY.1040.003968
ORF1ab/nsp13368A368VgCagTa22AY.1050.001286
ORF1ab/nsp13368A368VgCagTa22AY.1080.002205
ORF1ab/nsp13368A368VgCagTa22AY.1130.000285
ORF1ab/nsp13368A368VgCagTa22AY.1140.000462
ORF1ab/nsp13368A368VgCagTa22AY.1160.000574
ORF1ab/nsp13368A368TGcaAca22AY.200.000078
ORF1ab/nsp13368A368TGcaAca22AY.290.000032
ORF1ab/nsp13368A368SGcaTca22AY.30.00002
ORF1ab/nsp13368A368VgCagTa22AY.3.10.000171
ORF1ab/nsp13368A368VgCagTa22AY.300.000791
ORF1ab/nsp13368A368SGcaTca22AY.330.000134
ORF1ab/nsp13368A368VgCagTa22AY.340.000194
ORF1ab/nsp13368A368VgCagTa22AY.34.10.00102
ORF1ab/nsp13368A368AgcAgcG22AY.420.00008
ORF1ab/nsp13368A368AgcAgcT22AY.460.000208
ORF1ab/nsp13368A368SGcaTca22AY.46.20.001271
ORF1ab/nsp13368A368AgcAgcT22AY.46.60.000144
ORF1ab/nsp13368A368VgCagTa22AY.480.00093
ORF1ab/nsp13368A368TGcaAca22AY.50.000041
ORF1ab/nsp13368A368SGcaTca22AY.550.001835
ORF1ab/nsp13368A368VgCagTa22AY.620.000871
ORF1ab/nsp13368A368VgCagTa22AY.70.000392
ORF1ab/nsp13368A368VgCagTa22AY.7.20.001119
ORF1ab/nsp13368A368VgCagTa22AY.700.000417
ORF1ab/nsp13368A368SGcaTca22AY.720.002721
ORF1ab/nsp13368A368SGcaTca22AY.750.000112
ORF1ab/nsp13368A368TGcaAca22AY.9.20.000073
ORF1ab/nsp13368A368VgCagTa22AY.950.001522
ORF1ab/nsp13368A368TGcaAca22AY.98.10.000097
ORF1ab/nsp13368A368VgCagTa22AY.98.10.000097
ORF1ab/nsp13368A368AgcAgcG22B0.000256
ORF1ab/nsp13368A368AgcAgcT22B.10.000018
ORF1ab/nsp13368A368SGcaTca22B.1.1.1890.003026
ORF1ab/nsp13368A368VgCagTa22B.1.1.2300.018349
ORF1ab/nsp13368A368VgCagTa22B.1.1.2360.013793
ORF1ab/nsp13368A368VgCagTa22B.1.1.2770.001517
ORF1ab/nsp13368A368SGcaTca22B.1.1.2840.000215
ORF1ab/nsp13368A368VgCagTa22B.1.1.3060.000877
ORF1ab/nsp13368A368SGcaTca22B.1.1.3170.000823
ORF1ab/nsp13368A368VgCagTa22B.1.1.3170.000823
ORF1ab/nsp13368A368AgcAgcG22B.1.1.330.000842
ORF1ab/nsp13368A368VgCagTa22B.1.1.5240.041667
ORF1ab/nsp13368A368VgCagTa22B.1.1.530.027397
ORF1ab/nsp13368A368TGcaAca22B.1.1190.021053
ORF1ab/nsp13368A368VgCagTa22B.1.160.300.005952
ORF1ab/nsp13368A368VgCagTa22B.1.177.40.000422
ORF1ab/nsp13368A368SGcaTca22B.1.177.540.001213
ORF1ab/nsp13368A368VgCagTa22B.1.177.870.001456
ORF1ab/nsp13368A368SGcaTca22B.1.2180.010309
ORF1ab/nsp13368A368SGcaTca22B.1.2240.05
ORF1ab/nsp13368A368VgCagTa22B.1.2320.001075
ORF1ab/nsp13368A368VgCagTa22B.1.2400.000431
ORF1ab/nsp13368A368SGcaTca22B.1.2580.000133
ORF1ab/nsp13368A368VgCagTa22B.1.2980.004228
ORF1ab/nsp13368A368VgCagTa22B.1.3240.00321
ORF1ab/nsp13368A368VgCagTa22B.1.36.290.001035
ORF1ab/nsp13368A368VgCagTa22B.1.36.360.001204
ORF1ab/nsp13368A368VgCagTa22B.1.4000.000858
ORF1ab/nsp13368A368SGcaTca22B.1.4290.000047
ORF1ab/nsp13368A368VgCagTa22B.1.4360.002058
ORF1ab/nsp13368A368VgCagTa22B.1.5490.014388
ORF1ab/nsp13368A368SGcaTca22B.1.5640.000852
ORF1ab/nsp13368A368SGcaTca22B.1.5750.000607
ORF1ab/nsp13368A368SGcaTca22B.1.5770.001375
ORF1ab/nsp13368A368VgCagTa22B.1.5820.000981
ORF1ab/nsp13368A368VgCagTa22B.1.6190.001742
ORF1ab/nsp13368A368VgCagTa22B.1.6230.001073
ORF1ab/nsp13368A368SGcaTca22B.1.6370.000146
ORF1ab/nsp13368A368SGcaTca22B.60.00182
ORF1ab/nsp13368A368SGcaTca22C.370.000232
ORF1ab/nsp13368A368SGcaTca22D.20.00015
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ORF1ab/nsp13368A368VgCagTa22P.1.150.000465
ORF1ab/nsp13368A368VgCagTa22Q.80.00033
ORF1ab/nsp13368A368VgCagTa11A.2.5.20.001572
ORF1ab/nsp13368A368VgCagTa11A.230.010526
ORF1ab/nsp13368A368VgCagTa11AE.40.043478
ORF1ab/nsp13368A368EgCagAa11All0
ORF1ab/nsp13368A368VgCagTa11AM.10.111111
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ORF1ab/nsp13368A368VgCagTa11AU.30.00211
ORF1ab/nsp13368A368SGcaTca11AW.10.003049
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ORF1ab/nsp13368A368AgcAgcC11AY.1020.000027
ORF1ab/nsp13368A368TGcaAca11AY.1020.000027
ORF1ab/nsp13368A368AgcAgcG11AY.1030.000006
ORF1ab/nsp13368A368TGcaAca11AY.1030.000006
ORF1ab/nsp13368A368SGcaTca11AY.1050.000643
ORF1ab/nsp13368A368VgCagTa11AY.1070.000466
ORF1ab/nsp13368A368LGCaTTa11AY.1080.001103
ORF1ab/nsp13368A368SGcaTca11AY.1100.000113
ORF1ab/nsp13368A368SGcaTca11AY.1130.000142
ORF1ab/nsp13368A368SGcaTca11AY.116.10.000311
ORF1ab/nsp13368A368SGcaTca11AY.1170.000085
ORF1ab/nsp13368A368VgCagTa11AY.1170.000085
ORF1ab/nsp13368A368SGcaTca11AY.120.20.001285
ORF1ab/nsp13368A368TGcaAca11AY.120.2.10.000498
ORF1ab/nsp13368A368SGcaTca11AY.130.000161
ORF1ab/nsp13368A368VgCagTa11AY.160.00038
ORF1ab/nsp13368A368PGcaCca11AY.16.10.00047
ORF1ab/nsp13368A368VgCagTa11AY.190.00114
ORF1ab/nsp13368A368SGcaTca11AY.190.00114
ORF1ab/nsp13368A368PGcaCca11AY.230.00007
ORF1ab/nsp13368A368AgcAgcG11AY.230.00007
ORF1ab/nsp13368A368VgCagTa11AY.23.10.000417
ORF1ab/nsp13368A368AgcAgcG11AY.240.000431
ORF1ab/nsp13368A368VgCagTa11AY.240.000431
ORF1ab/nsp13368A368SGcaTca11AY.240.000431
ORF1ab/nsp13368A368TGcaAca11AY.250.000006
ORF1ab/nsp13368A368TGcaAca11AY.270.000065
ORF1ab/nsp13368A368VgCagTa11AY.270.000065
ORF1ab/nsp13368A368PGcaCca11AY.290.000016
ORF1ab/nsp13368A368TGcaAca11AY.30.00001
ORF1ab/nsp13368A368AgcAgcG11AY.300.000396
ORF1ab/nsp13368A368SGcaTca11AY.320.000532
ORF1ab/nsp13368A368TGcaAca11AY.340.000097
ORF1ab/nsp13368A368VgCagTa11AY.350.000233
ORF1ab/nsp13368A368TGcaAca11AY.360.000148
ORF1ab/nsp13368A368SGcaTca11AY.360.000148
ORF1ab/nsp13368A368VgCagTa11AY.380.000499
ORF1ab/nsp13368A368AgcAgcG11AY.390.000025
ORF1ab/nsp13368A368TGcaAca11AY.390.000025
ORF1ab/nsp13368A368TGcaAca11AY.39.10.00004
ORF1ab/nsp13368A368GgCagGa11AY.40.000002
ORF1ab/nsp13368A368AgcAgcC11AY.4.20.000022
ORF1ab/nsp13368A368VgCagTa11AY.4.2.10.000149
ORF1ab/nsp13368A368SGcaTca11AY.4.2.10.000149
ORF1ab/nsp13368A368SGcaTca11AY.4.40.000409
ORF1ab/nsp13368A368AgcAgcT11AY.4.50.000107
ORF1ab/nsp13368A368SGcaTca11AY.4.50.000107
ORF1ab/nsp13368A368VgCagTa11AY.400.000964
ORF1ab/nsp13368A368del1gcAgc-11AY.440.000006
ORF1ab/nsp13368A368VgCagTa11AY.46.50.000198
ORF1ab/nsp13368A368AgcAgcG11AY.470.000031
ORF1ab/nsp13368A368SGcaTca11AY.470.000031
ORF1ab/nsp13368A368AgcAgcG11AY.50.000021
ORF1ab/nsp13368A368SGcaTca11AY.5.30.000337
ORF1ab/nsp13368A368VgCagTa11AY.5.30.000337
ORF1ab/nsp13368A368SGcaTca11AY.5.40.000277
ORF1ab/nsp13368A368VgCagTa11AY.5.40.000277
ORF1ab/nsp13368A368VgCagTa11AY.550.000917
ORF1ab/nsp13368A368AgcAgcT11AY.580.000907
ORF1ab/nsp13368A368AgcAgcC11AY.60.000041
ORF1ab/nsp13368A368SGcaTca11AY.600.000938
ORF1ab/nsp13368A368VgCagTa11AY.670.000464
ORF1ab/nsp13368A368VgCagTa11AY.680.000274
ORF1ab/nsp13368A368SGcaTca11AY.680.000274
ORF1ab/nsp13368A368SGcaTca11AY.700.000209
ORF1ab/nsp13368A368SGcaTca11AY.740.000116
ORF1ab/nsp13368A368VgCagTa11AY.740.000116
ORF1ab/nsp13368A368AgcAgcT11AY.750.000056
ORF1ab/nsp13368A368VgCagTa11AY.80.000606
ORF1ab/nsp13368A368VgCagTa11AY.820.001357
ORF1ab/nsp13368A368AgcAgcG11AY.840.000437
ORF1ab/nsp13368A368VgCagTa11AY.840.000437
ORF1ab/nsp13368A368VgCagTa11AY.870.000833
ORF1ab/nsp13368A368PGcaCca11AY.930.000273
ORF1ab/nsp13368A368AgcAgcC11AY.99.20.000092
ORF1ab/nsp13368A368TGcaAca11AY.99.20.000092
ORF1ab/nsp13368A368GgCagGa11B.10.000009
ORF1ab/nsp13368A368EgCagAa11B.10.000009
ORF1ab/nsp13368A368PGcaCca11B.10.000009
ORF1ab/nsp13368A368TGcaAca11B.1.10.000018
ORF1ab/nsp13368A368VgCagTa11B.1.1.1410.002012
ORF1ab/nsp13368A368SGcaTca11B.1.1.1550.071429
ORF1ab/nsp13368A368VgCagTa11B.1.1.1700.001247
ORF1ab/nsp13368A368SGcaTca11B.1.1.2140.000055
ORF1ab/nsp13368A368TGcaAca11B.1.1.2140.000055
ORF1ab/nsp13368A368GgCagGa11B.1.1.2140.000055
ORF1ab/nsp13368A368VgCagTa11B.1.1.2200.001859
ORF1ab/nsp13368A368AgcAgcG11B.1.1.2220.000204
ORF1ab/nsp13368A368VgCagTa11B.1.1.2430.004082
ORF1ab/nsp13368A368VgCagTa11B.1.1.250.000569
ORF1ab/nsp13368A368SGcaTca11B.1.1.250.000569
ORF1ab/nsp13368A368SGcaTca11B.1.1.2610.008621
ORF1ab/nsp13368A368VgCagTa11B.1.1.2620.015152
ORF1ab/nsp13368A368SGcaTca11B.1.1.2690.001353
ORF1ab/nsp13368A368VgCagTa11B.1.1.2730.006757
ORF1ab/nsp13368A368TGcaAca11B.1.1.2770.000759
ORF1ab/nsp13368A368SGcaTca11B.1.1.280.000311
ORF1ab/nsp13368A368VgCagTa11B.1.1.2840.000107
ORF1ab/nsp13368A368VgCagTa11B.1.1.2940.001266
ORF1ab/nsp13368A368TGcaAca11B.1.1.2940.001266
ORF1ab/nsp13368A368SGcaTca11B.1.1.2940.001266
ORF1ab/nsp13368A368TGcaAca11B.1.1.3110.000358
ORF1ab/nsp13368A368VgCagTa11B.1.1.330.000421
ORF1ab/nsp13368A368VgCagTa11B.1.1.3330.001076
ORF1ab/nsp13368A368del1gCag-a11B.1.1.3530.020833
ORF1ab/nsp13368A368VgCagTa11B.1.1.3540.004386
ORF1ab/nsp13368A368VgCagTa11B.1.1.3690.000446
ORF1ab/nsp13368A368SGcaTca11B.1.1.3880.045455
ORF1ab/nsp13368A368VgCagTa11B.1.1.390.00051
ORF1ab/nsp13368A368VgCagTa11B.1.1.3970.002252
ORF1ab/nsp13368A368VgCagTa11B.1.1.4210.030303
ORF1ab/nsp13368A368VgCagTa11B.1.1.4310.016129
ORF1ab/nsp13368A368VgCagTa11B.1.1.4480.002033
ORF1ab/nsp13368A368SGcaTca11B.1.1.4530.008475
ORF1ab/nsp13368A368VgCagTa11B.1.1.4870.005587
ORF1ab/nsp13368A368SGcaTca11B.1.1.4870.005587
ORF1ab/nsp13368A368SGcaTca11B.1.1.5190.00004
ORF1ab/nsp13368A368delGCA---11B.1.1.70.000001
ORF1ab/nsp13368A368TGcaAca11B.1.1.700.000341
ORF1ab/nsp13368A368VgCagTa11B.1.1280.000635
ORF1ab/nsp13368A368delGCA---11B.1.1390.000733
ORF1ab/nsp13368A368VgCagTa11B.1.1590.012195
ORF1ab/nsp13368A368VgCagTa11B.1.160.90.007194
ORF1ab/nsp13368A368PGcaCca11B.1.1770.000013
ORF1ab/nsp13368A368TGcaAca11B.1.1770.000013
ORF1ab/nsp13368A368SGcaTca11B.1.177.160.000664
ORF1ab/nsp13368A368VgCagTa11B.1.177.330.001645
ORF1ab/nsp13368A368VgCagTa11B.1.177.440.000519
ORF1ab/nsp13368A368TGcaAca11B.1.177.440.000519
ORF1ab/nsp13368A368VgCagTa11B.1.177.50.001242
ORF1ab/nsp13368A368VgCagTa11B.1.177.560.000668
ORF1ab/nsp13368A368SGcaTca11B.1.177.600.000218
ORF1ab/nsp13368A368VgCagTa11B.1.177.70.000165
ORF1ab/nsp13368A368TGcaAca11B.1.177.730.000566
ORF1ab/nsp13368A368VgCagTa11B.1.177.750.001041
ORF1ab/nsp13368A368VgCagTa11B.1.177.790.002342
ORF1ab/nsp13368A368TGcaAca11B.1.177.810.000189
ORF1ab/nsp13368A368SGcaTca11B.1.177.860.000183
ORF1ab/nsp13368A368AgcAgcG11B.1.20.000009
ORF1ab/nsp13368A368SGcaTca11B.1.2060.000816
ORF1ab/nsp13368A368VgCagTa11B.1.2100.002132
ORF1ab/nsp13368A368SGcaTca11B.1.2140.003663
ORF1ab/nsp13368A368VgCagTa11B.1.214.30.007143
ORF1ab/nsp13368A368VgCagTa11B.1.2200.01087
ORF1ab/nsp13368A368VgCagTa11B.1.221.30.000833
ORF1ab/nsp13368A368GgCagGa11B.1.2340.000132
ORF1ab/nsp13368A368VgCagTa11B.1.2390.001221
ORF1ab/nsp13368A368SGcaTca11B.1.2430.00007
ORF1ab/nsp13368A368TGcaAca11B.1.2580.000067
ORF1ab/nsp13368A368TGcaAca11B.1.2640.012346
ORF1ab/nsp13368A368VgCagTa11B.1.2650.001271
ORF1ab/nsp13368A368AgcAgcT11B.1.2730.012987
ORF1ab/nsp13368A368VgCagTa11B.1.3490.000715
ORF1ab/nsp13368A368TGcaAca11B.1.3510.00003
ORF1ab/nsp13368A368VgCagTa11B.1.351.20.000303
ORF1ab/nsp13368A368VgCagTa11B.1.351.50.0006
ORF1ab/nsp13368A368VgCagTa11B.1.36.170.000494
ORF1ab/nsp13368A368SGcaTca11B.1.3690.000285
ORF1ab/nsp13368A368VgCagTa11B.1.3780.006849
ORF1ab/nsp13368A368SGcaTca11B.1.3960.000706
ORF1ab/nsp13368A368VgCagTa11B.1.4160.001269
ORF1ab/nsp13368A368SGcaTca11B.1.4270.00005
ORF1ab/nsp13368A368SGcaTca11B.1.4560.003268
ORF1ab/nsp13368A368VgCagTa11B.1.466.20.000391
ORF1ab/nsp13368A368SGcaTca11B.1.4680.005714
ORF1ab/nsp13368A368VgCagTa11B.1.4970.000315
ORF1ab/nsp13368A368TGcaAca11B.1.5170.000427
ORF1ab/nsp13368A368AgcAgcG11B.1.5200.021739
ORF1ab/nsp13368A368TGcaAca11B.1.5200.021739
ORF1ab/nsp13368A368AgcAgcT11B.1.5240.001406
ORF1ab/nsp13368A368VgCagTa11B.1.5640.000426
ORF1ab/nsp13368A368VgCagTa11B.1.5650.00081
ORF1ab/nsp13368A368VgCagTa11B.1.5740.002151
ORF1ab/nsp13368A368AgcAgcT11B.1.5760.000907
ORF1ab/nsp13368A368SGcaTca11B.1.5760.000907
ORF1ab/nsp13368A368VgCagTa11B.1.5880.00091
ORF1ab/nsp13368A368SGcaTca11B.1.5950.000261
ORF1ab/nsp13368A368GgCagGa11B.1.5950.000261
ORF1ab/nsp13368A368SGcaTca11B.1.6100.003546
ORF1ab/nsp13368A368TGcaAca11B.1.617.10.000129
ORF1ab/nsp13368A368LGCaTTa11B.1.617.20.000004
ORF1ab/nsp13368A368del1gcAgc-11B.1.617.20.000004
ORF1ab/nsp13368A368PGcaCca11B.1.617.20.000004
ORF1ab/nsp13368A368SGcaTca11B.1.6180.004032
ORF1ab/nsp13368A368SGcaTca11B.1.619.10.000641
ORF1ab/nsp13368A368TGcaAca11B.1.6210.000089
ORF1ab/nsp13368A368VgCagTa11B.1.621.10.000506
ORF1ab/nsp13368A368VgCagTa11B.1.6280.000352
ORF1ab/nsp13368A368SGcaTca11B.1.80.001972
ORF1ab/nsp13368A368delGCA---11B.340.013699
ORF1ab/nsp13368A368VgCagTa11B.4.70.010101
ORF1ab/nsp13368A368VgCagTa11B.400.000364
ORF1ab/nsp13368A368SGcaTca11B.610.005747
ORF1ab/nsp13368A368VgCagTa11C.10.002392
ORF1ab/nsp13368A368AgcAgcC11C.1.20.004255
ORF1ab/nsp13368A368VgCagTa11C.290.0625
ORF1ab/nsp13368A368VgCagTa11C.360.000911
ORF1ab/nsp13368A368VgCagTa11C.60.037037
ORF1ab/nsp13368A368AgcAgcG11D.20.000075
ORF1ab/nsp13368A368VgCagTa11N.50.001767
ORF1ab/nsp13368A368VgCagTa11N.90.005952
ORF1ab/nsp13368A368delGCA---11P.10.000016
ORF1ab/nsp13368A368AgcAgcG11P.10.000016
ORF1ab/nsp13368A368SGcaTca11P.1.10.000318
ORF1ab/nsp13368A368VgCagTa11P.1.130.000898
ORF1ab/nsp13368A368SGcaTca11P.1.140.000048
ORF1ab/nsp13368A368TGcaAca11P.1.150.000232
ORF1ab/nsp13368A368VgCagTa11P.1.160.000374
ORF1ab/nsp13368A368SGcaTca11P.1.170.000162
ORF1ab/nsp13368A368SGcaTca11P.60.003145
ORF1ab/nsp13368A368VgCagTa11P.60.003145
ORF1ab/nsp13368A368VgCagTa11Q.40.000455
ORF1ab/nsp13368A368SGcaTca11Q.80.000165
ORF1ab/nsp13368A368SGcaTca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.