CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 367 | T367I | T5691I | nonsyn | aCa | aTa | 4648 | 4648 | 1 | 17335-17337 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 4648 | 4648 | All | 0.000889 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2796 | 2796 | AY.2 | 0.995726 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 531 | 531 | AY.44 | 0.003232 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 129 | 129 | AY.79 | 0.156174 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 129 | 129 | B.1.617.2 | 0.000486 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 116 | 116 | AY.4 | 0.000181 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 92 | 92 | B.1.2 | 0.00081 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 87 | 87 | B.1.1.7 | 0.000078 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 60 | 60 | B.1.526 | 0.00141 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 55 | 55 | AY.46.4 | 0.009048 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 41 | 41 | AY.103 | 0.000255 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 41 | 41 | B.1 | 0.000376 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 28 | 28 | AY.25 | 0.000168 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 27 | 27 | AY.71 | 0.012827 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 21 | 21 | AY.62 | 0.00915 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 20 | 20 | AY.39 | 0.000494 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 19 | 19 | AY.75 | 0.001064 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 17 | 17 | AY.100 | 0.000782 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 14 | 14 | AY.120.2 | 0.017995 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 14 | 14 | AY.37 | 0.004425 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 13 | 13 | AY.38 | 0.00649 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 13 | 13 | B.1.36.1 | 0.014823 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 10 | 10 | AY.116.1 | 0.003114 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 7 | 7 | AY.52 | 0.0057 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 7 | 7 | AY.65 | 0.003731 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 7 | 7 | AY.75.1 | 0.001262 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 6 | 6 | AY.1 | 0.002374 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | B.1.1.241 | 0.006211 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | B.1.179 | 0.011278 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 367 | T367I | aCa | aTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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