CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 366

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13366T366TT5690TsynacGacT400829030.72430117332-17334
ORF1ab/nsp13366T366TT5690TsynacGacA400810710.26721617332-17334
ORF1ab/nsp13366T366TT5690TsynacGacC4008340.0084830317332-17334
ORF1ab/nsp13366T366MT5690MnonsynaCgaTg619619117332-17334
ORF1ab/nsp13366T366AT5690AnonsynAcgGcg190190117332-17334
ORF1ab/nsp13366T366KT5690KnonsynaCgaAg44117332-17334
ORF1ab/nsp13366T366delT5690deldelACG---33117332-17334
ORF1ab/nsp13366T366IT5690InonsynaCGaTT11117332-17334
ORF1ab/nsp13366T366del2T5690del2delACg--g11117332-17334
ORF1ab/nsp13366T366ST5690SnonsynAcgTcg11117332-17334
ORF1ab/nsp13366T366PT5690PnonsynAcgCcg11117332-17334

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13366T366TacGacT29034008All0.000555
ORF1ab/nsp13366T366TacGacA10714008All0.000205
ORF1ab/nsp13366T366TacGacC344008All0.000007
ORF1ab/nsp13366T366TacGacT507931B.1.1.70.000454
ORF1ab/nsp13366T366TacGacA424931B.1.1.70.00038
ORF1ab/nsp13366T366MaCgaTg619619All0.000118
ORF1ab/nsp13366T366TacGacT388388B.1.177.40.081891
ORF1ab/nsp13366T366TacGacT284321AY.40.000442
ORF1ab/nsp13366T366TacGacA36321AY.40.000056
ORF1ab/nsp13366T366TacGacC1321AY.40.000002
ORF1ab/nsp13366T366TacGacT194279AY.250.001167
ORF1ab/nsp13366T366TacGacA85279AY.250.000511
ORF1ab/nsp13366T366TacGacT248248B.1.4110.918519
ORF1ab/nsp13366T366TacGacT208227AY.1030.001291
ORF1ab/nsp13366T366TacGacA11227AY.1030.000068
ORF1ab/nsp13366T366TacGacC8227AY.1030.00005
ORF1ab/nsp13366T366AAcgGcg190190All0.000036
ORF1ab/nsp13366T366TacGacA122188B.1.10.002213
ORF1ab/nsp13366T366TacGacT66188B.1.10.001197
ORF1ab/nsp13366T366MaCgaTg136136B.1.1.70.000122
ORF1ab/nsp13366T366TacGacT78111B.1.617.20.000294
ORF1ab/nsp13366T366TacGacA30111B.1.617.20.000113
ORF1ab/nsp13366T366TacGacC3111B.1.617.20.000011
ORF1ab/nsp13366T366TacGacA95102AY.200.003692
ORF1ab/nsp13366T366TacGacT7102AY.200.000272
ORF1ab/nsp13366T366TacGacT86102AY.430.000381
ORF1ab/nsp13366T366TacGacA14102AY.430.000062
ORF1ab/nsp13366T366TacGacC2102AY.430.000009
ORF1ab/nsp13366T366TacGacT5585B.1.1770.000724
ORF1ab/nsp13366T366TacGacA3085B.1.1770.000395
ORF1ab/nsp13366T366AAcgGcg7979B.1.177.810.014956
ORF1ab/nsp13366T366TacGacT7272AY.60.002961
ORF1ab/nsp13366T366TacGacT6071B.1.20.000528
ORF1ab/nsp13366T366TacGacA1171B.1.20.000097
ORF1ab/nsp13366T366MaCgaTg4949B.1.2580.003261
ORF1ab/nsp13366T366TacGacT4848AN.10.96
ORF1ab/nsp13366T366MaCgaTg4848AY.40.000075
ORF1ab/nsp13366T366AAcgGcg4444AY.40.000068
ORF1ab/nsp13366T366TacGacA3441AY.290.000536
ORF1ab/nsp13366T366TacGacT741AY.290.00011
ORF1ab/nsp13366T366TacGacT3241B.10.000293
ORF1ab/nsp13366T366TacGacA941B.10.000082
ORF1ab/nsp13366T366TacGacT3940AY.260.001104
ORF1ab/nsp13366T366TacGacA140AY.260.000028
ORF1ab/nsp13366T366MaCgaTg3939B.1.1600.001216
ORF1ab/nsp13366T366TacGacT3333B.1.2390.040293
ORF1ab/nsp13366T366TacGacT2833B.1.5260.000658
ORF1ab/nsp13366T366TacGacA533B.1.5260.000118
ORF1ab/nsp13366T366MaCgaTg3030B.1.617.20.000113
ORF1ab/nsp13366T366TacGacT2727B.1.6180.108871
ORF1ab/nsp13366T366TacGacT2325AY.440.00014
ORF1ab/nsp13366T366TacGacA225AY.440.000012
ORF1ab/nsp13366T366TacGacT1524AY.30.000149
ORF1ab/nsp13366T366TacGacA624AY.30.00006
ORF1ab/nsp13366T366TacGacC324AY.30.00003
ORF1ab/nsp13366T366TacGacA2024B.1.4290.000471
ORF1ab/nsp13366T366TacGacT424B.1.4290.000094
ORF1ab/nsp13366T366MaCgaTg2323AY.30.000229
ORF1ab/nsp13366T366TacGacT2020AY.39.10.000792
ORF1ab/nsp13366T366TacGacA1919AY.360.002816
ORF1ab/nsp13366T366MaCgaTg1919AY.50.000392
ORF1ab/nsp13366T366MaCgaTg1818AY.5.40.004981
ORF1ab/nsp13366T366TacGacT1618B.1.2580.001065
ORF1ab/nsp13366T366TacGacA218B.1.2580.000133
ORF1ab/nsp13366T366TacGacT1717B.1.5950.004436
ORF1ab/nsp13366T366TacGacT1115AY.1020.000292
ORF1ab/nsp13366T366TacGacA415AY.1020.000106
ORF1ab/nsp13366T366MaCgaTg1515AY.910.010957
ORF1ab/nsp13366T366TacGacT1115P.10.000173
ORF1ab/nsp13366T366TacGacA215P.10.000032
ORF1ab/nsp13366T366TacGacC215P.10.000032
ORF1ab/nsp13366T366TacGacA1014AY.50.000206
ORF1ab/nsp13366T366TacGacT414AY.50.000083
ORF1ab/nsp13366T366MaCgaTg1414AY.60.000576
ORF1ab/nsp13366T366TacGacT1414B.1.1.2840.001504
ORF1ab/nsp13366T366MaCgaTg1414B.1.20.000123
ORF1ab/nsp13366T366TacGacA1414B.1.2130.208955
ORF1ab/nsp13366T366MaCgaTg1313AY.430.000058
ORF1ab/nsp13366T366MaCgaTg1313B.1.1.3720.008953
ORF1ab/nsp13366T366AAcgGcg1313B.1.1.70.000012
ORF1ab/nsp13366T366TacGacT1213B.1.36.180.005042
ORF1ab/nsp13366T366TacGacA113B.1.36.180.00042
ORF1ab/nsp13366T366TacGacT1313B.1.5820.006379
ORF1ab/nsp13366T366TacGacA913P.1.140.00043
ORF1ab/nsp13366T366TacGacT413P.1.140.000191
ORF1ab/nsp13366T366TacGacA1012B.1.3850.106383
ORF1ab/nsp13366T366TacGacT212B.1.3850.021277
ORF1ab/nsp13366T366MaCgaTg1212P.10.000189
ORF1ab/nsp13366T366TacGacT1111B.1.110.30.007902
ORF1ab/nsp13366T366TacGacT1010AY.160.003797
ORF1ab/nsp13366T366TacGacT710AY.4.20.000152
ORF1ab/nsp13366T366TacGacA310AY.4.20.000065
ORF1ab/nsp13366T366MaCgaTg1010B.1.1770.000132
ORF1ab/nsp13366T366MaCgaTg99AY.710.004276
ORF1ab/nsp13366T366MaCgaTg99B.1.1.2220.001836
ORF1ab/nsp13366T366TacGacT78AY.1200.00026
ORF1ab/nsp13366T366TacGacA18AY.1200.000037
ORF1ab/nsp13366T366TacGacT88AY.230.000558
ORF1ab/nsp13366T366TacGacT68AY.390.000148
ORF1ab/nsp13366T366TacGacA28AY.390.000049
ORF1ab/nsp13366T366TacGacT68AY.470.000187
ORF1ab/nsp13366T366TacGacA28AY.470.000062
ORF1ab/nsp13366T366MaCgaTg88B.1.177.800.015296
ORF1ab/nsp13366T366TacGacT88B.1.2210.000568
ORF1ab/nsp13366T366MaCgaTg77AY.1030.000043
ORF1ab/nsp13366T366TacGacT47AY.1180.000251
ORF1ab/nsp13366T366TacGacA37AY.1180.000188
ORF1ab/nsp13366T366AAcgGcg77AY.280.013233
ORF1ab/nsp13366T366MaCgaTg77AY.440.000043
ORF1ab/nsp13366T366TacGacT77B.1.1.5190.000278
ORF1ab/nsp13366T366MaCgaTg77B.1.1.700.002387
ORF1ab/nsp13366T366TacGacT77B.1.160.250.077778
ORF1ab/nsp13366T366TacGacT67B.1.2430.000418
ORF1ab/nsp13366T366TacGacA17B.1.2430.00007
ORF1ab/nsp13366T366TacGacT57B.1.3510.000149
ORF1ab/nsp13366T366TacGacC27B.1.3510.000059
ORF1ab/nsp13366T366TacGacT46AY.1130.00057
ORF1ab/nsp13366T366TacGacA26AY.1130.000285
ORF1ab/nsp13366T366TacGacT56AY.300.001979
ORF1ab/nsp13366T366TacGacA16AY.300.000396
ORF1ab/nsp13366T366MaCgaTg66B.10.000055
ORF1ab/nsp13366T366TacGacC66B.1.177.860.001101
ORF1ab/nsp13366T366AAcgGcg66B.1.20.000053
ORF1ab/nsp13366T366TacGacT66B.1.360.000875
ORF1ab/nsp13366T366TacGacT66B.1.4520.082192
ORF1ab/nsp13366T366TacGacT56B.1.6210.000443
ORF1ab/nsp13366T366TacGacA16B.1.6210.000089
ORF1ab/nsp13366T366MaCgaTg66Q.30.00087
ORF1ab/nsp13366T366TacGacT55AY.1000.00023
ORF1ab/nsp13366T366TacGacT55AY.380.002496
ORF1ab/nsp13366T366TacGacT55B0.000639
ORF1ab/nsp13366T366MaCgaTg55B.1.1.2160.004452
ORF1ab/nsp13366T366TacGacT55B.1.4280.005102
ORF1ab/nsp13366T366MaCgaTg55B.1.5970.023148
ORF1ab/nsp13366T366TacGacA45P.1.150.000929
ORF1ab/nsp13366T366TacGacT15P.1.150.000232
ORF1ab/nsp13366T366KaCgaAg44All0.000001
ORF1ab/nsp13366T366MaCgaTg44AY.250.000024
ORF1ab/nsp13366T366AAcgGcg44B.1.10.000073
ORF1ab/nsp13366T366TacGacA44B.1.1.1890.006051
ORF1ab/nsp13366T366MaCgaTg44B.1.1.5190.000159
ORF1ab/nsp13366T366AAcgGcg44B.1.2400.000862
ORF1ab/nsp13366T366MaCgaTg44B.1.4290.000094
ORF1ab/nsp13366T366TacGacT44B.1.5250.000453
ORF1ab/nsp13366T366TacGacT44B.1.5960.000349
ORF1ab/nsp13366T366MaCgaTg44B.1.617.10.000516
ORF1ab/nsp13366T366TacGacT44B.1.617.10.000516
ORF1ab/nsp13366T366TacGacA34Q.80.000495
ORF1ab/nsp13366T366TacGacT14Q.80.000165
ORF1ab/nsp13366T366TacGacA24R.10.00018
ORF1ab/nsp13366T366TacGacT24R.10.00018
ORF1ab/nsp13366T366delACG---33All0.000001
ORF1ab/nsp13366T366MaCgaTg33AY.1100.000338
ORF1ab/nsp13366T366TacGacT33AY.1190.000106
ORF1ab/nsp13366T366TacGacA23AY.1210.000271
ORF1ab/nsp13366T366TacGacT13AY.1210.000135
ORF1ab/nsp13366T366TacGacT23AY.330.000134
ORF1ab/nsp13366T366TacGacC13AY.330.000067
ORF1ab/nsp13366T366TacGacA23AY.350.000466
ORF1ab/nsp13366T366TacGacT13AY.350.000233
ORF1ab/nsp13366T366TacGacC23AY.540.000191
ORF1ab/nsp13366T366TacGacA13AY.540.000095
ORF1ab/nsp13366T366TacGacT23AY.610.00021
ORF1ab/nsp13366T366TacGacA13AY.610.000105
ORF1ab/nsp13366T366TacGacT33AY.9.20.00011
ORF1ab/nsp13366T366TacGacT33AY.980.000237
ORF1ab/nsp13366T366TacGacT33AY.98.10.000145
ORF1ab/nsp13366T366TacGacT33AY.99.20.000276
ORF1ab/nsp13366T366MaCgaTg33B.1.10.000054
ORF1ab/nsp13366T366TacGacA23B.1.1.2220.000408
ORF1ab/nsp13366T366TacGacT13B.1.1.2220.000204
ORF1ab/nsp13366T366TacGacT23B.1.1.3060.000877
ORF1ab/nsp13366T366TacGacA13B.1.1.3060.000438
ORF1ab/nsp13366T366AAcgGcg33B.1.4290.000071
ORF1ab/nsp13366T366TacGacT33C.370.000348
ORF1ab/nsp13366T366AAcgGcg33P.10.000047
ORF1ab/nsp13366T366MaCgaTg33P.1.150.000697
ORF1ab/nsp13366T366TacGacT33P.20.00056
ORF1ab/nsp13366T366MaCgaTg22AB.10.016393
ORF1ab/nsp13366T366MaCgaTg22AY.1020.000053
ORF1ab/nsp13366T366TacGacT12AY.1040.001984
ORF1ab/nsp13366T366TacGacC12AY.1040.001984
ORF1ab/nsp13366T366AAcgGcg22AY.1090.001479
ORF1ab/nsp13366T366TacGacT22AY.1170.000169
ORF1ab/nsp13366T366TacGacT22AY.16.10.00094
ORF1ab/nsp13366T366MaCgaTg22AY.200.000078
ORF1ab/nsp13366T366AAcgGcg22AY.230.000139
ORF1ab/nsp13366T366TacGacC12AY.340.000097
ORF1ab/nsp13366T366TacGacT12AY.340.000097
ORF1ab/nsp13366T366MaCgaTg22AY.390.000049
ORF1ab/nsp13366T366TacGacT12AY.420.00004
ORF1ab/nsp13366T366TacGacC12AY.420.00004
ORF1ab/nsp13366T366AAcgGcg22AY.430.000009
ORF1ab/nsp13366T366TacGacT22AY.460.000208
ORF1ab/nsp13366T366TacGacT22AY.46.60.000144
ORF1ab/nsp13366T366MaCgaTg22B.1.1.100.00223
ORF1ab/nsp13366T366TacGacT22B.1.1.2000.014925
ORF1ab/nsp13366T366TacGacT22B.1.1.2140.000111
ORF1ab/nsp13366T366TacGacT22B.1.1.3010.002358
ORF1ab/nsp13366T366MaCgaTg22B.1.1.3680.006173
ORF1ab/nsp13366T366MaCgaTg22B.1.1.390.001019
ORF1ab/nsp13366T366TacGacA22B.1.1.4620.017241
ORF1ab/nsp13366T366MaCgaTg22B.1.177.550.004662
ORF1ab/nsp13366T366TacGacT22B.1.2120.033333
ORF1ab/nsp13366T366TacGacA22B.1.258.30.00335
ORF1ab/nsp13366T366TacGacT22B.1.351.30.001753
ORF1ab/nsp13366T366TacGacT22B.1.36.80.002
ORF1ab/nsp13366T366TacGacA12B.1.4040.001302
ORF1ab/nsp13366T366TacGacT12B.1.4040.001302
ORF1ab/nsp13366T366MaCgaTg22B.1.4270.000101
ORF1ab/nsp13366T366TacGacT12B.1.4270.00005
ORF1ab/nsp13366T366TacGacA12B.1.4270.00005
ORF1ab/nsp13366T366TacGacT22B.1.428.30.025641
ORF1ab/nsp13366T366TacGacA22B.1.5090.001732
ORF1ab/nsp13366T366AAcgGcg22B.1.5200.043478
ORF1ab/nsp13366T366TacGacT22B.1.5790.022472
ORF1ab/nsp13366T366MaCgaTg22B.350.015625
ORF1ab/nsp13366T366TacGacT22Q.30.00029
ORF1ab/nsp13366T366AAcgGcg11A0.000387
ORF1ab/nsp13366T366TacGacT11A0.000387
ORF1ab/nsp13366T366TacGacT11A.10.000282
ORF1ab/nsp13366T366TacGacT11A.20.000662
ORF1ab/nsp13366T366KaCgaAg11A.240.071429
ORF1ab/nsp13366T366MaCgaTg11A.270.001656
ORF1ab/nsp13366T366MaCgaTg11AA.10.007246
ORF1ab/nsp13366T366MaCgaTg11AA.40.009091
ORF1ab/nsp13366T366MaCgaTg11AD.20.000219
ORF1ab/nsp13366T366TacGacT11AE.80.000489
ORF1ab/nsp13366T366SAcgTcg11All0
ORF1ab/nsp13366T366del2ACg--g11All0
ORF1ab/nsp13366T366IaCGaTT11All0
ORF1ab/nsp13366T366PAcgCcg11All0
ORF1ab/nsp13366T366delACG---11AU.30.00211
ORF1ab/nsp13366T366TacGacA11AY.10.000396
ORF1ab/nsp13366T366MaCgaTg11AY.1000.000046
ORF1ab/nsp13366T366AAcgGcg11AY.1030.000006
ORF1ab/nsp13366T366MaCgaTg11AY.1040.001984
ORF1ab/nsp13366T366TacGacT11AY.1090.00074
ORF1ab/nsp13366T366TacGacT11AY.116.10.000311
ORF1ab/nsp13366T366MaCgaTg11AY.1170.000085
ORF1ab/nsp13366T366MaCgaTg11AY.1190.000035
ORF1ab/nsp13366T366MaCgaTg11AY.1210.000135
ORF1ab/nsp13366T366MaCgaTg11AY.130.000161
ORF1ab/nsp13366T366AAcgGcg11AY.200.000039
ORF1ab/nsp13366T366TacGacT11AY.240.000431
ORF1ab/nsp13366T366AAcgGcg11AY.250.000006
ORF1ab/nsp13366T366TacGacT11AY.270.000065
ORF1ab/nsp13366T366MaCgaTg11AY.290.000016
ORF1ab/nsp13366T366AAcgGcg11AY.290.000016
ORF1ab/nsp13366T366TacGacA11AY.29.10.000221
ORF1ab/nsp13366T366AAcgGcg11AY.30.00001
ORF1ab/nsp13366T366TacGacT11AY.3.10.000085
ORF1ab/nsp13366T366TacGacT11AY.320.000532
ORF1ab/nsp13366T366MaCgaTg11AY.340.000097
ORF1ab/nsp13366T366AAcgGcg11AY.360.000148
ORF1ab/nsp13366T366MaCgaTg11AY.380.000499
ORF1ab/nsp13366T366MaCgaTg11AY.39.10.00004
ORF1ab/nsp13366T366AAcgGcg11AY.4.20.000022
ORF1ab/nsp13366T366TacGacT11AY.4.50.000107
ORF1ab/nsp13366T366MaCgaTg11AY.400.000964
ORF1ab/nsp13366T366TacGacT11AY.400.000964
ORF1ab/nsp13366T366AAcgGcg11AY.420.00004
ORF1ab/nsp13366T366AAcgGcg11AY.440.000006
ORF1ab/nsp13366T366TacGacT11AY.510.000909
ORF1ab/nsp13366T366TacGacT11AY.520.000814
ORF1ab/nsp13366T366MaCgaTg11AY.590.00053
ORF1ab/nsp13366T366MaCgaTg11AY.660.00107
ORF1ab/nsp13366T366MaCgaTg11AY.70.000196
ORF1ab/nsp13366T366TacGacT11AY.70.000196
ORF1ab/nsp13366T366MaCgaTg11AY.700.000209
ORF1ab/nsp13366T366TacGacT11AY.710.000475
ORF1ab/nsp13366T366TacGacT11AY.740.000116
ORF1ab/nsp13366T366TacGacA11AY.750.000056
ORF1ab/nsp13366T366TacGacT11AY.770.001127
ORF1ab/nsp13366T366TacGacT11AY.790.001211
ORF1ab/nsp13366T366TacGacA11AY.90.000068
ORF1ab/nsp13366T366MaCgaTg11AY.9.20.000037
ORF1ab/nsp13366T366TacGacT11AY.940.000443
ORF1ab/nsp13366T366MaCgaTg11AY.99.20.000092
ORF1ab/nsp13366T366MaCgaTg11B0.000128
ORF1ab/nsp13366T366AAcgGcg11B0.000128
ORF1ab/nsp13366T366KaCgaAg11B.10.000009
ORF1ab/nsp13366T366AAcgGcg11B.10.000009
ORF1ab/nsp13366T366SAcgTcg11B.1.10.000018
ORF1ab/nsp13366T366TacGacT11B.1.1.1110.014706
ORF1ab/nsp13366T366TacGacT11B.1.1.1700.001247
ORF1ab/nsp13366T366TacGacA11B.1.1.2070.001182
ORF1ab/nsp13366T366MaCgaTg11B.1.1.2140.000055
ORF1ab/nsp13366T366TacGacA11B.1.1.2200.001859
ORF1ab/nsp13366T366IaCGaTT11B.1.1.2220.000204
ORF1ab/nsp13366T366TacGacT11B.1.1.2820.011628
ORF1ab/nsp13366T366MaCgaTg11B.1.1.3110.000358
ORF1ab/nsp13366T366TacGacA11B.1.1.3170.000412
ORF1ab/nsp13366T366TacGacA11B.1.1.3180.000302
ORF1ab/nsp13366T366TacGacA11B.1.1.340.013158
ORF1ab/nsp13366T366TacGacT11B.1.1.3480.000796
ORF1ab/nsp13366T366TacGacT11B.1.1.3880.045455
ORF1ab/nsp13366T366TacGacT11B.1.1.390.00051
ORF1ab/nsp13366T366TacGacA11B.1.1.3970.002252
ORF1ab/nsp13366T366MaCgaTg11B.1.1.400.034483
ORF1ab/nsp13366T366TacGacT11B.1.1.4200.001006
ORF1ab/nsp13366T366MaCgaTg11B.1.1.4490.022727
ORF1ab/nsp13366T366TacGacT11B.1.1.4560.055556
ORF1ab/nsp13366T366MaCgaTg11B.1.1.4670.019231
ORF1ab/nsp13366T366TacGacT11B.1.1.4850.016667
ORF1ab/nsp13366T366KaCgaAg11B.1.1.70.000001
ORF1ab/nsp13366T366del2ACg--g11B.1.1.70.000001
ORF1ab/nsp13366T366TacGacT11B.1.1110.001175
ORF1ab/nsp13366T366TacGacA11B.1.1260.001276
ORF1ab/nsp13366T366TacGacA11B.1.1280.000635
ORF1ab/nsp13366T366TacGacT11B.1.1570.002985
ORF1ab/nsp13366T366TacGacT11B.1.1600.000031
ORF1ab/nsp13366T366AAcgGcg11B.1.1600.000031
ORF1ab/nsp13366T366MaCgaTg11B.1.160.140.002119
ORF1ab/nsp13366T366TacGacT11B.1.1730.026316
ORF1ab/nsp13366T366AAcgGcg11B.1.1770.000013
ORF1ab/nsp13366T366TacGacT11B.1.177.170.000821
ORF1ab/nsp13366T366AAcgGcg11B.1.177.210.000076
ORF1ab/nsp13366T366TacGacT11B.1.177.330.001645
ORF1ab/nsp13366T366MaCgaTg11B.1.177.430.001477
ORF1ab/nsp13366T366TacGacA11B.1.177.430.001477
ORF1ab/nsp13366T366TacGacT11B.1.177.550.002331
ORF1ab/nsp13366T366TacGacT11B.1.177.730.000566
ORF1ab/nsp13366T366MaCgaTg11B.1.177.760.002494
ORF1ab/nsp13366T366TacGacA11B.1.214.20.0006
ORF1ab/nsp13366T366MaCgaTg11B.1.2210.000071
ORF1ab/nsp13366T366TacGacT11B.1.2230.002778
ORF1ab/nsp13366T366MaCgaTg11B.1.2340.000132
ORF1ab/nsp13366T366MaCgaTg11B.1.258.110.000396
ORF1ab/nsp13366T366TacGacC11B.1.30.002618
ORF1ab/nsp13366T366TacGacT11B.1.3010.005917
ORF1ab/nsp13366T366TacGacT11B.1.3130.006579
ORF1ab/nsp13366T366TacGacT11B.1.3240.001605
ORF1ab/nsp13366T366KaCgaAg11B.1.3360.002439
ORF1ab/nsp13366T366TacGacT11B.1.3460.001311
ORF1ab/nsp13366T366AAcgGcg11B.1.3510.00003
ORF1ab/nsp13366T366MaCgaTg11B.1.3510.00003
ORF1ab/nsp13366T366MaCgaTg11B.1.360.000146
ORF1ab/nsp13366T366MaCgaTg11B.1.36.100.004785
ORF1ab/nsp13366T366MaCgaTg11B.1.36.170.000494
ORF1ab/nsp13366T366MaCgaTg11B.1.36.180.00042
ORF1ab/nsp13366T366TacGacT11B.1.3620.001541
ORF1ab/nsp13366T366MaCgaTg11B.1.3670.000792
ORF1ab/nsp13366T366MaCgaTg11B.1.3910.001127
ORF1ab/nsp13366T366TacGacT11B.1.3910.001127
ORF1ab/nsp13366T366MaCgaTg11B.1.4040.001302
ORF1ab/nsp13366T366AAcgGcg11B.1.4270.00005
ORF1ab/nsp13366T366PAcgCcg11B.1.4290.000024
ORF1ab/nsp13366T366MaCgaTg11B.1.466.20.000391
ORF1ab/nsp13366T366MaCgaTg11B.1.4700.001404
ORF1ab/nsp13366T366MaCgaTg11B.1.4950.009091
ORF1ab/nsp13366T366MaCgaTg11B.1.5170.000427
ORF1ab/nsp13366T366MaCgaTg11B.1.5260.000024
ORF1ab/nsp13366T366TacGacT11B.1.5390.017544
ORF1ab/nsp13366T366TacGacA11B.1.5760.000907
ORF1ab/nsp13366T366TacGacA11B.1.5770.000687
ORF1ab/nsp13366T366AAcgGcg11B.1.617.20.000004
ORF1ab/nsp13366T366TacGacT11B.1.6230.000536
ORF1ab/nsp13366T366TacGacT11B.1.6250.002353
ORF1ab/nsp13366T366TacGacA11B.1.6270.00202
ORF1ab/nsp13366T366TacGacT11B.1.6280.000352
ORF1ab/nsp13366T366TacGacT11B.1.6370.000073
ORF1ab/nsp13366T366MaCgaTg11B.1.6370.000073
ORF1ab/nsp13366T366delACG---11B.340.013699
ORF1ab/nsp13366T366TacGacT11B.4.50.011905
ORF1ab/nsp13366T366TacGacT11B.60.00091
ORF1ab/nsp13366T366MaCgaTg11C.350.000774
ORF1ab/nsp13366T366TacGacT11C.36.30.000567
ORF1ab/nsp13366T366AAcgGcg11C.36.30.000567
ORF1ab/nsp13366T366delACG---11P.10.000016
ORF1ab/nsp13366T366MaCgaTg11P.1.10.000318
ORF1ab/nsp13366T366TacGacT11P.1.120.000484
ORF1ab/nsp13366T366MaCgaTg11P.1.140.000048
ORF1ab/nsp13366T366MaCgaTg11P.1.20.001156
ORF1ab/nsp13366T366MaCgaTg11P.20.000187
ORF1ab/nsp13366T366TacGacT11P.60.003145
ORF1ab/nsp13366T366TacGacA11Q.10.000126
ORF1ab/nsp13366T366TacGacT11Q.70.001111
ORF1ab/nsp13366T366TacGacA11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.