CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 365 | E365D | E5689D | nonsyn | gaG | gaT | 29229 | 29122 | 0.996339 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365D | E5689D | nonsyn | gaG | gaC | 29229 | 107 | 0.00366075 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365E | E5689E | syn | gaG | gaA | 362 | 362 | 1 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365X | E5689X | nonsyn | Gag | Tag | 27 | 27 | 1 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365G | E5689G | nonsyn | gAg | gGg | 7 | 7 | 1 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365del | E5689del | del | GAG | --- | 3 | 3 | 1 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365del1 | E5689del1 | del | Gag | -ag | 3 | 2 | 0.666667 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365del1 | E5689del1 | del | gaG | ga- | 3 | 1 | 0.333333 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365V | E5689V | nonsyn | gAg | gTg | 1 | 1 | 1 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365Q | E5689Q | nonsyn | Gag | Cag | 1 | 1 | 1 | 17329-17331 |
ORF1ab/nsp13 | 365 | E365A | E5689A | nonsyn | gAg | gCg | 1 | 1 | 1 | 17329-17331 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 29122 | 29229 | All | 0.00557 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 107 | 29229 | All | 0.00002 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 24088 | 24089 | AY.6 | 0.990705 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 24089 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 858 | 860 | AY.4 | 0.001335 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 2 | 860 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 853 | 854 | B.1.617.2 | 0.003212 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 854 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 362 | 362 | All | 0.000069 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 328 | 328 | AW.1 | 1 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 235 | 245 | B.1.1.7 | 0.00021 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 10 | 245 | B.1.1.7 | 0.000009 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 234 | 234 | AY.44 | 0.001424 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 227 | 228 | AY.43 | 0.001006 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 228 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 101 | 101 | AY.45 | 0.01229 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 101 | 101 | B.1.36 | 0.014736 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 60 | 95 | AY.3 | 0.000597 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 35 | 95 | AY.3 | 0.000348 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 91 | 92 | AY.5 | 0.001879 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 92 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 88 | 88 | B.1.429 | 0.002071 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 80 | 80 | B.1.534 | 1 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 48 | 73 | AY.25 | 0.000289 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 25 | 73 | AY.25 | 0.00015 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 69 | 70 | B.1 | 0.000632 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 70 | B.1 | 0.000009 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 60 | 60 | AY.103 | 0.000373 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 60 | 60 | AY.20 | 0.002332 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 59 | 59 | B.1.598 | 1 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 56 | 56 | B.1.1.7 | 0.00005 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 55 | 56 | B.1.2 | 0.000484 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 56 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 54 | 54 | AY.31 | 1 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 50 | 52 | AY.42 | 0.002012 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 2 | 52 | AY.42 | 0.00008 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 49 | 50 | B.1.177 | 0.000645 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 50 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 50 | 50 | B.1.177.86 | 0.009173 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 47 | 48 | AY.39 | 0.001161 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 48 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 46 | 46 | AY.29 | 0.000726 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 41 | 41 | AY.102 | 0.001087 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 41 | 41 | AY.108 | 0.045204 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 40 | 40 | AY.113 | 0.005696 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 40 | 40 | AY.46.6 | 0.002888 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 40 | 40 | AY.64 | 0.02381 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 39 | 39 | B.1.526 | 0.000917 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 38 | 38 | B.1.214.2 | 0.022782 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 34 | 34 | AY.42 | 0.001368 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 34 | 34 | AY.75 | 0.001905 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 30 | 30 | AY.99.2 | 0.002765 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 26 | 29 | AY.98 | 0.002054 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 3 | 29 | AY.98 | 0.000237 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 27 | 27 | All | 0.000005 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 27 | 27 | B.1.617.1 | 0.003482 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 25 | 25 | AY.111 | 0.004579 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 24 | 24 | AY.30 | 0.009497 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 22 | 22 | B.1.1.222 | 0.004488 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 22 | 22 | B.1.258 | 0.001464 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 22 | 22 | B.1.351 | 0.000654 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 20 | 20 | AY.46 | 0.002082 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 20 | 20 | AY.58 | 0.018149 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 19 | 19 | AY.98.1 | 0.00092 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 18 | 19 | B.1.636 | 0.120805 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 19 | B.1.636 | 0.006711 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 18 | 18 | AY.23 | 0.001255 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 18 | 18 | AY.54 | 0.001716 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 15 | 16 | AY.4.2 | 0.000325 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 16 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 14 | 14 | AY.84 | 0.006124 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 10 | 13 | AY.100 | 0.00046 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 3 | 13 | AY.100 | 0.000138 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 13 | 13 | AY.121 | 0.001759 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 13 | 13 | AY.37 | 0.004109 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 13 | 13 | AY.46.5 | 0.002579 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 12 | 12 | B.1.470 | 0.016854 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 11 | 11 | AY.117 | 0.00093 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 11 | 11 | AY.5.3 | 0.003711 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 10 | 10 | AY.116 | 0.002868 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 10 | 10 | B.1.232 | 0.005373 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 9 | 10 | B.1.525 | 0.001018 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 10 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 9 | 9 | AY.60 | 0.008443 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 8 | 8 | AY.106 | 0.002679 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 8 | 8 | AY.5.4 | 0.002214 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 8 | 8 | AY.67 | 0.003714 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 8 | B.1.1.519 | 0.000159 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 4 | 8 | B.1.1.519 | 0.000159 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 8 | 8 | B.1.619.1 | 0.005131 |
ORF1ab/nsp13 | 365 | E365G | gAg | gGg | 7 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 7 | 7 | AY.105 | 0.004502 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 7 | 7 | AY.120.1 | 0.002247 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 7 | 7 | AY.88 | 0.006189 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 6 | 6 | B.1.565 | 0.004862 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | AY.114 | 0.001156 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | AY.21 | 0.009488 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | B.1.1.198 | 0.007342 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | AY.52 | 0.003257 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | AY.93 | 0.001092 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | B.1.398 | 0.011905 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 4 | B.1.609 | 0.001438 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 4 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp13 | 365 | E365del | GAG | --- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 365 | E365del1 | Gag | -ag | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 365 | E365del1 | gaG | ga- | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.81 | 0.005976 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.1.354 | 0.013158 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.223 | 0.008333 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 3 | B.1.311 | 0.000549 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 3 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 365 | E365G | gAg | gGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.131 | 0.017544 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.429.1 | 0.024096 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp13 | 365 | E365V | gAg | gTg | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 365 | E365A | gAg | gCg | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 365 | E365Q | Gag | Cag | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp13 | 365 | E365del | GAG | --- | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 365 | E365A | gAg | gCg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 365 | E365G | gAg | gGg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 365 | E365G | gAg | gGg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 365 | E365del1 | Gag | -ag | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 365 | E365del1 | gaG | ga- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 365 | E365del1 | Gag | -ag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 365 | E365G | gAg | gGg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 365 | E365V | gAg | gTg | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 365 | E365G | gAg | gGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 365 | E365G | gAg | gGg | 1 | 1 | B.33 | 0.021277 |
ORF1ab/nsp13 | 365 | E365del | GAG | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp13 | 365 | E365Q | Gag | Cag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 365 | E365X | Gag | Tag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp13 | 365 | E365del | GAG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 365 | E365E | gaG | gaA | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 365 | E365D | gaG | gaT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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