CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 364

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13364P364SP5688SnonsynCctTct474474117326-17328
ORF1ab/nsp13364P364PP5688PsynccTccC4593520.76688517326-17328
ORF1ab/nsp13364P364PP5688PsynccTccA459770.16775617326-17328
ORF1ab/nsp13364P364PP5688PsynccTccG459300.065359517326-17328
ORF1ab/nsp13364P364LP5688LnonsyncCtcTt156156117326-17328
ORF1ab/nsp13364P364HP5688HnonsyncCtcAt114114117326-17328
ORF1ab/nsp13364P364delP5688deldelCCT---44117326-17328
ORF1ab/nsp13364P364AP5688AnonsynCctGct22117326-17328
ORF1ab/nsp13364P364TP5688TnonsynCctAct11117326-17328

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13364P364SCctTct474474All0.000091
ORF1ab/nsp13364P364PccTccC352459All0.000067
ORF1ab/nsp13364P364PccTccA77459All0.000015
ORF1ab/nsp13364P364PccTccG30459All0.000006
ORF1ab/nsp13364P364LcCtcTt156156All0.00003
ORF1ab/nsp13364P364PccTccC141144AY.250.000848
ORF1ab/nsp13364P364PccTccA2144AY.250.000012
ORF1ab/nsp13364P364PccTccG1144AY.250.000006
ORF1ab/nsp13364P364HcCtcAt114114All0.000022
ORF1ab/nsp13364P364SCctTct8181AY.440.000493
ORF1ab/nsp13364P364PccTccC3473AY.40.000053
ORF1ab/nsp13364P364PccTccA3273AY.40.00005
ORF1ab/nsp13364P364PccTccG773AY.40.000011
ORF1ab/nsp13364P364SCctTct5959AY.40.000092
ORF1ab/nsp13364P364SCctTct4646C.370.005339
ORF1ab/nsp13364P364PccTccC4046P.10.00063
ORF1ab/nsp13364P364PccTccG446P.10.000063
ORF1ab/nsp13364P364PccTccA246P.10.000032
ORF1ab/nsp13364P364PccTccC2939B.1.1.70.000026
ORF1ab/nsp13364P364PccTccA939B.1.1.70.000008
ORF1ab/nsp13364P364PccTccG139B.1.1.70.000001
ORF1ab/nsp13364P364SCctTct3232B.1.617.20.00012
ORF1ab/nsp13364P364SCctTct3131B.1.1.70.000028
ORF1ab/nsp13364P364PccTccC2323B.1.4290.000541
ORF1ab/nsp13364P364SCctTct2222B.1.20.000194
ORF1ab/nsp13364P364HcCtcAt2121B.1.1.70.000019
ORF1ab/nsp13364P364LcCtcTt2121B.1.1.70.000019
ORF1ab/nsp13364P364LcCtcTt2020B.1.1.3250.512821
ORF1ab/nsp13364P364HcCtcAt1717AY.290.000268
ORF1ab/nsp13364P364SCctTct1717B.10.000156
ORF1ab/nsp13364P364SCctTct1616AY.390.000395
ORF1ab/nsp13364P364PccTccC915AY.430.00004
ORF1ab/nsp13364P364PccTccG615AY.430.000027
ORF1ab/nsp13364P364SCctTct1414AY.1030.000087
ORF1ab/nsp13364P364LcCtcTt1313AY.40.00002
ORF1ab/nsp13364P364PccTccC1013B.1.617.20.000038
ORF1ab/nsp13364P364PccTccG213B.1.617.20.000008
ORF1ab/nsp13364P364PccTccA113B.1.617.20.000004
ORF1ab/nsp13364P364SCctTct1212A.10.003382
ORF1ab/nsp13364P364SCctTct1212AY.250.000072
ORF1ab/nsp13364P364SCctTct1111B.1.438.10.00118
ORF1ab/nsp13364P364PccTccA910AY.50.000186
ORF1ab/nsp13364P364PccTccC110AY.50.000021
ORF1ab/nsp13364P364LcCtcTt99B.1.617.20.000034
ORF1ab/nsp13364P364HcCtcAt88AY.250.000048
ORF1ab/nsp13364P364SCctTct88B.1.10.000145
ORF1ab/nsp13364P364PccTccC88B.1.1.2860.023188
ORF1ab/nsp13364P364HcCtcAt77B.1.1.2220.001428
ORF1ab/nsp13364P364LcCtcTt77B.1.3510.000208
ORF1ab/nsp13364P364PccTccC56B.10.000046
ORF1ab/nsp13364P364PccTccA16B.10.000009
ORF1ab/nsp13364P364HcCtcAt55AY.40.000008
ORF1ab/nsp13364P364SCctTct55AY.430.000022
ORF1ab/nsp13364P364PccTccA55AY.470.000156
ORF1ab/nsp13364P364LcCtcTt55B.1.1770.000066
ORF1ab/nsp13364P364LcCtcTt55B.1.20.000044
ORF1ab/nsp13364P364HcCtcAt55B.1.20.000044
ORF1ab/nsp13364P364LcCtcTt55P.10.000079
ORF1ab/nsp13364P364delCCT---44All0.000001
ORF1ab/nsp13364P364PccTccC44AY.1030.000025
ORF1ab/nsp13364P364LcCtcTt44AY.250.000024
ORF1ab/nsp13364P364PccTccG44AY.280.007561
ORF1ab/nsp13364P364HcCtcAt44AY.330.000267
ORF1ab/nsp13364P364SCctTct44AY.4.20.000087
ORF1ab/nsp13364P364SCctTct44AY.4.50.00043
ORF1ab/nsp13364P364LcCtcTt44AY.430.000018
ORF1ab/nsp13364P364PccTccC34AY.440.000018
ORF1ab/nsp13364P364PccTccG14AY.440.000006
ORF1ab/nsp13364P364LcCtcTt44B.10.000037
ORF1ab/nsp13364P364PccTccC44B.1.1.5190.000159
ORF1ab/nsp13364P364SCctTct44B.1.1.5230.00625
ORF1ab/nsp13364P364SCctTct44B.1.2390.004884
ORF1ab/nsp13364P364PccTccC34B.1.360.000438
ORF1ab/nsp13364P364PccTccA14B.1.360.000146
ORF1ab/nsp13364P364SCctTct44B.1.5960.000349
ORF1ab/nsp13364P364PccTccC44C.260.029412
ORF1ab/nsp13364P364SCctTct44P.1.170.000647
ORF1ab/nsp13364P364LcCtcTt33AY.1020.00008
ORF1ab/nsp13364P364HcCtcAt33AY.1190.000106
ORF1ab/nsp13364P364LcCtcTt33AY.390.000074
ORF1ab/nsp13364P364SCctTct33AY.420.000121
ORF1ab/nsp13364P364HcCtcAt33AY.430.000013
ORF1ab/nsp13364P364SCctTct33AY.450.000365
ORF1ab/nsp13364P364PccTccA33B.1.1.3160.002775
ORF1ab/nsp13364P364PccTccC33B.1.1.370.000579
ORF1ab/nsp13364P364HcCtcAt33B.1.1.630.001157
ORF1ab/nsp13364P364SCctTct33B.1.351.20.000908
ORF1ab/nsp13364P364LcCtcTt33B.1.4410.028846
ORF1ab/nsp13364P364LcCtcTt33B.1.5880.00273
ORF1ab/nsp13364P364SCctTct33B.1.617.10.000387
ORF1ab/nsp13364P364HcCtcAt33B.1.617.20.000011
ORF1ab/nsp13364P364SCctTct33P.10.000047
ORF1ab/nsp13364P364ACctGct22All0
ORF1ab/nsp13364P364HcCtcAt22AY.1000.000092
ORF1ab/nsp13364P364HcCtcAt22AY.1030.000012
ORF1ab/nsp13364P364SCctTct22AY.1180.000125
ORF1ab/nsp13364P364LcCtcTt22AY.1200.000074
ORF1ab/nsp13364P364LcCtcTt22AY.120.2.10.000997
ORF1ab/nsp13364P364SCctTct22AY.290.000032
ORF1ab/nsp13364P364PccTccC22AY.30.00002
ORF1ab/nsp13364P364SCctTct22AY.3.10.000171
ORF1ab/nsp13364P364SCctTct22AY.330.000134
ORF1ab/nsp13364P364SCctTct22AY.460.000208
ORF1ab/nsp13364P364HcCtcAt22AY.710.00095
ORF1ab/nsp13364P364PccTccC22B.1.10.000036
ORF1ab/nsp13364P364PccTccC22B.1.1.10.000653
ORF1ab/nsp13364P364LcCtcTt22B.1.1.500.001358
ORF1ab/nsp13364P364PccTccA22B.1.1.630.000772
ORF1ab/nsp13364P364PccTccC22B.1.1770.000026
ORF1ab/nsp13364P364SCctTct22B.1.177.100.001756
ORF1ab/nsp13364P364LcCtcTt22B.1.177.50.002484
ORF1ab/nsp13364P364SCctTct22B.1.177.600.000437
ORF1ab/nsp13364P364PccTccC22B.1.177.670.015267
ORF1ab/nsp13364P364PccTccC12B.1.20.000009
ORF1ab/nsp13364P364PccTccA12B.1.20.000009
ORF1ab/nsp13364P364SCctTct22B.1.2400.000431
ORF1ab/nsp13364P364SCctTct22B.1.4200.020833
ORF1ab/nsp13364P364SCctTct22B.1.5090.001732
ORF1ab/nsp13364P364SCctTct22B.1.5950.000522
ORF1ab/nsp13364P364SCctTct22B.6.80.016529
ORF1ab/nsp13364P364SCctTct22C.350.001548
ORF1ab/nsp13364P364HcCtcAt22C.370.000232
ORF1ab/nsp13364P364SCctTct22C.37.10.005236
ORF1ab/nsp13364P364PccTccC22P.20.000373
ORF1ab/nsp13364P364PccTccG11A.20.000662
ORF1ab/nsp13364P364LcCtcTt11A.2.20.001689
ORF1ab/nsp13364P364HcCtcAt11AD.20.000219
ORF1ab/nsp13364P364TCctAct11All0
ORF1ab/nsp13364P364delCCT---11AU.30.00211
ORF1ab/nsp13364P364PccTccC11AY.1000.000046
ORF1ab/nsp13364P364PccTccG11AY.1010.00049
ORF1ab/nsp13364P364LcCtcTt11AY.1030.000006
ORF1ab/nsp13364P364SCctTct11AY.1070.000466
ORF1ab/nsp13364P364LcCtcTt11AY.1180.000063
ORF1ab/nsp13364P364SCctTct11AY.1190.000035
ORF1ab/nsp13364P364PccTccA11AY.1190.000035
ORF1ab/nsp13364P364PccTccA11AY.1200.000037
ORF1ab/nsp13364P364SCctTct11AY.1200.000037
ORF1ab/nsp13364P364SCctTct11AY.160.00038
ORF1ab/nsp13364P364SCctTct11AY.200.000039
ORF1ab/nsp13364P364HcCtcAt11AY.200.000039
ORF1ab/nsp13364P364PccTccA11AY.200.000039
ORF1ab/nsp13364P364ACctGct11AY.200.000039
ORF1ab/nsp13364P364LcCtcTt11AY.230.00007
ORF1ab/nsp13364P364PccTccC11AY.230.00007
ORF1ab/nsp13364P364HcCtcAt11AY.230.00007
ORF1ab/nsp13364P364PccTccA11AY.260.000028
ORF1ab/nsp13364P364LcCtcTt11AY.290.000016
ORF1ab/nsp13364P364PccTccC11AY.290.000016
ORF1ab/nsp13364P364HcCtcAt11AY.29.10.000221
ORF1ab/nsp13364P364HcCtcAt11AY.30.00001
ORF1ab/nsp13364P364SCctTct11AY.30.00001
ORF1ab/nsp13364P364HcCtcAt11AY.390.000025
ORF1ab/nsp13364P364HcCtcAt11AY.39.10.00004
ORF1ab/nsp13364P364PccTccA11AY.4.10.000737
ORF1ab/nsp13364P364LcCtcTt11AY.4.2.10.000149
ORF1ab/nsp13364P364LcCtcTt11AY.4.50.000107
ORF1ab/nsp13364P364SCctTct11AY.410.000294
ORF1ab/nsp13364P364LcCtcTt11AY.440.000006
ORF1ab/nsp13364P364SCctTct11AY.46.60.000072
ORF1ab/nsp13364P364PccTccC11AY.46.60.000072
ORF1ab/nsp13364P364HcCtcAt11AY.50.000021
ORF1ab/nsp13364P364PccTccA11AY.5.40.000277
ORF1ab/nsp13364P364PccTccC11AY.500.000799
ORF1ab/nsp13364P364HcCtcAt11AY.520.000814
ORF1ab/nsp13364P364delCCT---11AY.540.000095
ORF1ab/nsp13364P364LcCtcTt11AY.570.000656
ORF1ab/nsp13364P364ACctGct11AY.590.00053
ORF1ab/nsp13364P364HcCtcAt11AY.610.000105
ORF1ab/nsp13364P364SCctTct11AY.670.000464
ORF1ab/nsp13364P364LcCtcTt11AY.75.10.00018
ORF1ab/nsp13364P364HcCtcAt11AY.75.10.00018
ORF1ab/nsp13364P364HcCtcAt11AY.850.000427
ORF1ab/nsp13364P364LcCtcTt11AY.90.000068
ORF1ab/nsp13364P364SCctTct11AY.90.000068
ORF1ab/nsp13364P364SCctTct11AY.9.20.000037
ORF1ab/nsp13364P364LcCtcTt11AY.950.000761
ORF1ab/nsp13364P364HcCtcAt11AY.960.002075
ORF1ab/nsp13364P364SCctTct11AY.960.002075
ORF1ab/nsp13364P364LcCtcTt11AY.980.000079
ORF1ab/nsp13364P364PccTccA11AY.98.10.000048
ORF1ab/nsp13364P364TCctAct11B.10.000009
ORF1ab/nsp13364P364HcCtcAt11B.10.000009
ORF1ab/nsp13364P364LcCtcTt11B.1.10.000018
ORF1ab/nsp13364P364SCctTct11B.1.1.1210.002427
ORF1ab/nsp13364P364PccTccA11B.1.1.1580.012195
ORF1ab/nsp13364P364PccTccG11B.1.1.1980.001468
ORF1ab/nsp13364P364SCctTct11B.1.1.2140.000055
ORF1ab/nsp13364P364SCctTct11B.1.1.2220.000204
ORF1ab/nsp13364P364SCctTct11B.1.1.2310.003096
ORF1ab/nsp13364P364SCctTct11B.1.1.2400.004695
ORF1ab/nsp13364P364PccTccC11B.1.1.2750.011236
ORF1ab/nsp13364P364LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp13364P364SCctTct11B.1.1.2970.002237
ORF1ab/nsp13364P364SCctTct11B.1.1.3060.000438
ORF1ab/nsp13364P364PccTccC11B.1.1.330.000421
ORF1ab/nsp13364P364LcCtcTt11B.1.1.3720.000689
ORF1ab/nsp13364P364PccTccA11B.1.1.3770.001381
ORF1ab/nsp13364P364HcCtcAt11B.1.1.3880.045455
ORF1ab/nsp13364P364HcCtcAt11B.1.1.4170.002703
ORF1ab/nsp13364P364LcCtcTt11B.1.1.510.001718
ORF1ab/nsp13364P364SCctTct11B.1.1310.008772
ORF1ab/nsp13364P364PccTccC11B.1.140.017544
ORF1ab/nsp13364P364SCctTct11B.1.1470.000756
ORF1ab/nsp13364P364LcCtcTt11B.1.160.260.002421
ORF1ab/nsp13364P364SCctTct11B.1.1770.000013
ORF1ab/nsp13364P364LcCtcTt11B.1.177.200.001517
ORF1ab/nsp13364P364SCctTct11B.1.177.30.007634
ORF1ab/nsp13364P364LcCtcTt11B.1.177.520.001757
ORF1ab/nsp13364P364LcCtcTt11B.1.177.570.000281
ORF1ab/nsp13364P364SCctTct11B.1.177.790.002342
ORF1ab/nsp13364P364PccTccC11B.1.2060.000816
ORF1ab/nsp13364P364SCctTct11B.1.2140.003663
ORF1ab/nsp13364P364PccTccC11B.1.2210.000071
ORF1ab/nsp13364P364PccTccC11B.1.2340.000132
ORF1ab/nsp13364P364SCctTct11B.1.2430.00007
ORF1ab/nsp13364P364LcCtcTt11B.1.258.210.007752
ORF1ab/nsp13364P364SCctTct11B.1.258.220.002667
ORF1ab/nsp13364P364LcCtcTt11B.1.2810.021739
ORF1ab/nsp13364P364LcCtcTt11B.1.3110.000275
ORF1ab/nsp13364P364HcCtcAt11B.1.3210.034483
ORF1ab/nsp13364P364SCctTct11B.1.3490.000715
ORF1ab/nsp13364P364PccTccC11B.1.3510.00003
ORF1ab/nsp13364P364SCctTct11B.1.3510.00003
ORF1ab/nsp13364P364LcCtcTt11B.1.351.20.000303
ORF1ab/nsp13364P364LcCtcTt11B.1.360.000146
ORF1ab/nsp13364P364HcCtcAt11B.1.360.000146
ORF1ab/nsp13364P364HcCtcAt11B.1.36.390.002217
ORF1ab/nsp13364P364SCctTct11B.1.3690.000285
ORF1ab/nsp13364P364PccTccC11B.1.3980.002976
ORF1ab/nsp13364P364SCctTct11B.1.400.019608
ORF1ab/nsp13364P364SCctTct11B.1.4000.000429
ORF1ab/nsp13364P364SCctTct11B.1.4080.00369
ORF1ab/nsp13364P364PccTccC11B.1.4270.00005
ORF1ab/nsp13364P364SCctTct11B.1.4270.00005
ORF1ab/nsp13364P364LcCtcTt11B.1.4270.00005
ORF1ab/nsp13364P364LcCtcTt11B.1.4380.006536
ORF1ab/nsp13364P364HcCtcAt11B.1.438.10.000107
ORF1ab/nsp13364P364LcCtcTt11B.1.4700.001404
ORF1ab/nsp13364P364LcCtcTt11B.1.4970.000315
ORF1ab/nsp13364P364PccTccC11B.1.5250.000113
ORF1ab/nsp13364P364SCctTct11B.1.5260.000024
ORF1ab/nsp13364P364LcCtcTt11B.1.5260.000024
ORF1ab/nsp13364P364HcCtcAt11B.1.5260.000024
ORF1ab/nsp13364P364SCctTct11B.1.5640.000426
ORF1ab/nsp13364P364LcCtcTt11B.1.5640.000426
ORF1ab/nsp13364P364HcCtcAt11B.1.5820.000491
ORF1ab/nsp13364P364PccTccG11B.1.5960.000087
ORF1ab/nsp13364P364LcCtcTt11B.1.5960.000087
ORF1ab/nsp13364P364LcCtcTt11B.1.6040.017241
ORF1ab/nsp13364P364LcCtcTt11B.1.6210.000089
ORF1ab/nsp13364P364PccTccC11B.1.6210.000089
ORF1ab/nsp13364P364HcCtcAt11B.1.621.10.000506
ORF1ab/nsp13364P364SCctTct11B.1.621.10.000506
ORF1ab/nsp13364P364SCctTct11B.1.910.002075
ORF1ab/nsp13364P364delCCT---11B.340.013699
ORF1ab/nsp13364P364SCctTct11C.140.004329
ORF1ab/nsp13364P364PccTccC11C.140.004329
ORF1ab/nsp13364P364LcCtcTt11C.160.00106
ORF1ab/nsp13364P364LcCtcTt11C.360.000911
ORF1ab/nsp13364P364LcCtcTt11C.370.000116
ORF1ab/nsp13364P364HcCtcAt11M.10.023256
ORF1ab/nsp13364P364delCCT---11P.10.000016
ORF1ab/nsp13364P364PccTccC11P.1.120.000484
ORF1ab/nsp13364P364LcCtcTt11P.1.140.000048
ORF1ab/nsp13364P364HcCtcAt11P.1.140.000048
ORF1ab/nsp13364P364SCctTct11Q.20.000613
ORF1ab/nsp13364P364HcCtcAt11Q.20.000613
ORF1ab/nsp13364P364SCctTct11R.10.00009
ORF1ab/nsp13364P364HcCtcAt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.