CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 356

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13356V356VV5680VsyngtCgtT982493150.94818817302-17304
ORF1ab/nsp13356V356VV5680VsyngtCgtG98243730.037968217302-17304
ORF1ab/nsp13356V356VV5680VsyngtCgtA98241360.013843617302-17304
ORF1ab/nsp13356V356FV5680FnonsynGtcTtc183818370.99945617302-17304
ORF1ab/nsp13356V356FV5680FnonsynGtCTtT183810.0005440717302-17304
ORF1ab/nsp13356V356IV5680InonsynGtcAtc65640.98461517302-17304
ORF1ab/nsp13356V356IV5680InonsynGtCAtT6510.015384617302-17304
ORF1ab/nsp13356V356AV5680AnonsyngTcgCc5454117302-17304
ORF1ab/nsp13356V356LV5680LnonsynGtcCtc1010117302-17304
ORF1ab/nsp13356V356GV5680GnonsyngTcgGc88117302-17304
ORF1ab/nsp13356V356del1V5680del1delgtCgt-650.83333317302-17304
ORF1ab/nsp13356V356del1V5680del1delGtc-tc610.16666717302-17304
ORF1ab/nsp13356V356delV5680deldelGTC---22117302-17304
ORF1ab/nsp13356V356DV5680DnonsyngTcgAc11117302-17304
ORF1ab/nsp13356V356CV5680CnonsynGTcTGc11117302-17304

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13356V356VgtCgtT93159824All0.001782
ORF1ab/nsp13356V356VgtCgtG3739824All0.000071
ORF1ab/nsp13356V356VgtCgtA1369824All0.000026
ORF1ab/nsp13356V356VgtCgtT19271937B.1.1.70.001725
ORF1ab/nsp13356V356VgtCgtA71937B.1.1.70.000006
ORF1ab/nsp13356V356VgtCgtG31937B.1.1.70.000003
ORF1ab/nsp13356V356FGtcTtc18371838All0.000351
ORF1ab/nsp13356V356FGtCTtT11838All0
ORF1ab/nsp13356V356VgtCgtT11771194AY.40.001832
ORF1ab/nsp13356V356VgtCgtA141194AY.40.000022
ORF1ab/nsp13356V356VgtCgtG31194AY.40.000005
ORF1ab/nsp13356V356FGtcTtc987987AY.40.001536
ORF1ab/nsp13356V356VgtCgtT565570B.1.617.20.002127
ORF1ab/nsp13356V356VgtCgtG3570B.1.617.20.000011
ORF1ab/nsp13356V356VgtCgtA2570B.1.617.20.000008
ORF1ab/nsp13356V356VgtCgtT457460AY.430.002025
ORF1ab/nsp13356V356VgtCgtA3460AY.430.000013
ORF1ab/nsp13356V356VgtCgtT375423B.1.20.003302
ORF1ab/nsp13356V356VgtCgtA48423B.1.20.000423
ORF1ab/nsp13356V356VgtCgtG319319AY.770.359639
ORF1ab/nsp13356V356VgtCgtT243246AY.1030.001509
ORF1ab/nsp13356V356VgtCgtA3246AY.1030.000019
ORF1ab/nsp13356V356VgtCgtT225225B.1.5050.986842
ORF1ab/nsp13356V356VgtCgtT205206AY.30.002039
ORF1ab/nsp13356V356VgtCgtG1206AY.30.00001
ORF1ab/nsp13356V356VgtCgtT203203Q.10.025644
ORF1ab/nsp13356V356VgtCgtT196197AY.440.001193
ORF1ab/nsp13356V356VgtCgtA1197AY.440.000006
ORF1ab/nsp13356V356VgtCgtT172190AY.250.001035
ORF1ab/nsp13356V356VgtCgtA18190AY.250.000108
ORF1ab/nsp13356V356VgtCgtT190190P.10.002993
ORF1ab/nsp13356V356VgtCgtT162163B.10.001484
ORF1ab/nsp13356V356VgtCgtG1163B.10.000009
ORF1ab/nsp13356V356VgtCgtT150152B.1.1770.001975
ORF1ab/nsp13356V356VgtCgtA1152B.1.1770.000013
ORF1ab/nsp13356V356VgtCgtG1152B.1.1770.000013
ORF1ab/nsp13356V356VgtCgtT123123B.1.2210.008737
ORF1ab/nsp13356V356VgtCgtT116116B.1.3510.003448
ORF1ab/nsp13356V356VgtCgtT109109AY.1140.025191
ORF1ab/nsp13356V356VgtCgtT104104AY.290.00164
ORF1ab/nsp13356V356VgtCgtT9091B.1.4290.002118
ORF1ab/nsp13356V356VgtCgtA191B.1.4290.000024
ORF1ab/nsp13356V356FGtcTtc8989B.1.1.70.00008
ORF1ab/nsp13356V356FGtcTtc8585B.1.617.20.00032
ORF1ab/nsp13356V356VgtCgtT8183B.1.10.001469
ORF1ab/nsp13356V356VgtCgtA283B.1.10.000036
ORF1ab/nsp13356V356FGtcTtc8383B.1.3560.143351
ORF1ab/nsp13356V356VgtCgtT7676AY.460.00791
ORF1ab/nsp13356V356VgtCgtT7373B.1.1.1760.032074
ORF1ab/nsp13356V356VgtCgtT6767B.1.5090.058009
ORF1ab/nsp13356V356IGtcAtc6465All0.000012
ORF1ab/nsp13356V356IGtCAtT165All0
ORF1ab/nsp13356V356VgtCgtT5555B.1.1.2050.204461
ORF1ab/nsp13356V356AgTcgCc5454All0.00001
ORF1ab/nsp13356V356VgtCgtT4949B.1.1.5190.001946
ORF1ab/nsp13356V356VgtCgtT4748AY.390.001161
ORF1ab/nsp13356V356VgtCgtA148AY.390.000025
ORF1ab/nsp13356V356VgtCgtT4848AY.50.000991
ORF1ab/nsp13356V356VgtCgtT4747B.1.160.210.959184
ORF1ab/nsp13356V356VgtCgtT4646AY.1020.00122
ORF1ab/nsp13356V356VgtCgtT4646AY.470.001431
ORF1ab/nsp13356V356VgtCgtT4445AY.260.001246
ORF1ab/nsp13356V356VgtCgtG145AY.260.000028
ORF1ab/nsp13356V356VgtCgtT4141B.1.5260.000964
ORF1ab/nsp13356V356VgtCgtT4141B.1.5750.012439
ORF1ab/nsp13356V356VgtCgtT3739AY.1190.001306
ORF1ab/nsp13356V356VgtCgtA239AY.1190.000071
ORF1ab/nsp13356V356FGtcTtc3939B.1.1.5190.001549
ORF1ab/nsp13356V356VgtCgtT3939B.1.2340.005146
ORF1ab/nsp13356V356VgtCgtT3838B.1.360.005544
ORF1ab/nsp13356V356FGtcTtc3636AY.250.000217
ORF1ab/nsp13356V356VgtCgtG3636B.1.214.10.72
ORF1ab/nsp13356V356FGtcTtc3535B.1.20.000308
ORF1ab/nsp13356V356VgtCgtT3434B.1.214.20.020384
ORF1ab/nsp13356V356VgtCgtT3434B.1.2650.043202
ORF1ab/nsp13356V356VgtCgtT3034B.1.4270.001515
ORF1ab/nsp13356V356VgtCgtA434B.1.4270.000202
ORF1ab/nsp13356V356FGtcTtc3333AY.430.000146
ORF1ab/nsp13356V356FGtcTtc3333B.1.5640.014055
ORF1ab/nsp13356V356VgtCgtT3232AY.1000.001472
ORF1ab/nsp13356V356VgtCgtT3030B.1.2430.002088
ORF1ab/nsp13356V356VgtCgtT3030N.100.882353
ORF1ab/nsp13356V356VgtCgtT2929B.1.1.1700.03616
ORF1ab/nsp13356V356VgtCgtT2929B.1.177.810.00549
ORF1ab/nsp13356V356VgtCgtT2929B.1.4360.029835
ORF1ab/nsp13356V356FGtcTtc2828AY.290.000442
ORF1ab/nsp13356V356VgtCgtT2828B.1.1.2220.005712
ORF1ab/nsp13356V356VgtCgtT2626AY.4.20.000564
ORF1ab/nsp13356V356FGtcTtc2425B.1.10.000435
ORF1ab/nsp13356V356FGtCTtT125B.1.10.000018
ORF1ab/nsp13356V356VgtCgtT2424AY.46.60.001733
ORF1ab/nsp13356V356VgtCgtT2424B.1.1.3260.042254
ORF1ab/nsp13356V356FGtcTtc2323AY.440.00014
ORF1ab/nsp13356V356FGtcTtc2121AY.1020.000557
ORF1ab/nsp13356V356VgtCgtT2121AY.46.10.021561
ORF1ab/nsp13356V356VgtCgtT2121AY.540.002002
ORF1ab/nsp13356V356VgtCgtT2121B.1.351.20.006354
ORF1ab/nsp13356V356VgtCgtT2121B.1.5250.002376
ORF1ab/nsp13356V356VgtCgtT2121P.1.140.001004
ORF1ab/nsp13356V356VgtCgtT2020AD.20.004379
ORF1ab/nsp13356V356VgtCgtT2020AY.240.008621
ORF1ab/nsp13356V356VgtCgtT2020AY.7.20.011186
ORF1ab/nsp13356V356VgtCgtT2020B.1.5960.001743
ORF1ab/nsp13356V356VgtCgtT1719AY.340.001648
ORF1ab/nsp13356V356VgtCgtA219AY.340.000194
ORF1ab/nsp13356V356VgtCgtT1919B.1.1.1890.028744
ORF1ab/nsp13356V356VgtCgtT1818AY.1170.001521
ORF1ab/nsp13356V356VgtCgtT1818AY.950.013699
ORF1ab/nsp13356V356VgtCgtT1818B.1.1600.000561
ORF1ab/nsp13356V356VgtCgtT1818P.1.170.002912
ORF1ab/nsp13356V356IGtcAtc1717AY.1030.000106
ORF1ab/nsp13356V356VgtCgtT1717B.1.177.860.003119
ORF1ab/nsp13356V356VgtCgtT1616AY.1200.000595
ORF1ab/nsp13356V356VgtCgtT1616AY.200.000622
ORF1ab/nsp13356V356FGtcTtc1616AY.4.20.000347
ORF1ab/nsp13356V356VgtCgtT1616AY.980.001264
ORF1ab/nsp13356V356VgtCgtA1616B.1.1.10.005227
ORF1ab/nsp13356V356VgtCgtT1616B.1.2580.001065
ORF1ab/nsp13356V356VgtCgtT1316C.370.001509
ORF1ab/nsp13356V356VgtCgtA316C.370.000348
ORF1ab/nsp13356V356FGtcTtc1515AY.540.00143
ORF1ab/nsp13356V356VgtCgtT1515AY.98.10.000726
ORF1ab/nsp13356V356FGtcTtc1414AY.330.000935
ORF1ab/nsp13356V356FGtcTtc1414B.1.36.180.005882
ORF1ab/nsp13356V356VgtCgtT1313AY.39.10.000515
ORF1ab/nsp13356V356FGtcTtc1313B.1.1.270.073446
ORF1ab/nsp13356V356VgtCgtT1313B.1.6210.001151
ORF1ab/nsp13356V356VgtCgtT1212AY.1180.000752
ORF1ab/nsp13356V356VgtCgtT1212AY.230.000837
ORF1ab/nsp13356V356VgtCgtT1212AY.840.005249
ORF1ab/nsp13356V356VgtCgtT1212B.1.1.2910.008909
ORF1ab/nsp13356V356VgtCgtT1212B.1.1.330.005051
ORF1ab/nsp13356V356VgtCgtT1212B.1.1470.00907
ORF1ab/nsp13356V356VgtCgtT1212B.1.6370.000877
ORF1ab/nsp13356V356VgtCgtT1111AY.330.000735
ORF1ab/nsp13356V356VgtCgtT1111AY.750.000616
ORF1ab/nsp13356V356VgtCgtT1111AY.890.053922
ORF1ab/nsp13356V356VgtCgtT1111B.1.160.320.04721
ORF1ab/nsp13356V356VgtCgtT1011B.1.5950.00261
ORF1ab/nsp13356V356VgtCgtA111B.1.5950.000261
ORF1ab/nsp13356V356VgtCgtT1010A.20.006618
ORF1ab/nsp13356V356LGtcCtc1010All0.000002
ORF1ab/nsp13356V356VgtCgtT1010AY.160.003797
ORF1ab/nsp13356V356FGtcTtc1010AY.5.40.002767
ORF1ab/nsp13356V356FGtcTtc1010B.10.000092
ORF1ab/nsp13356V356VgtCgtT1010B.1.1.3060.004384
ORF1ab/nsp13356V356VgtCgtT1010B.1.160.160.009294
ORF1ab/nsp13356V356VgtCgtT1010B.1.177.40.002111
ORF1ab/nsp13356V356AgTcgCc1010B.1.4090.007812
ORF1ab/nsp13356V356VgtCgtT1010D.20.00075
ORF1ab/nsp13356V356VgtCgtT1010P.1.10.003177
ORF1ab/nsp13356V356VgtCgtT1010P.20.001866
ORF1ab/nsp13356V356VgtCgtT99AY.530.002588
ORF1ab/nsp13356V356FGtcTtc99AY.99.20.000829
ORF1ab/nsp13356V356VgtCgtT99B.1.1.4340.003137
ORF1ab/nsp13356V356VgtCgtT99B.1.177.820.004296
ORF1ab/nsp13356V356IGtcAtc99B.1.617.20.000034
ORF1ab/nsp13356V356VgtCgtT99Q.80.001484
ORF1ab/nsp13356V356GgTcgGc88All0.000002
ORF1ab/nsp13356V356VgtCgtT88AY.1050.005145
ORF1ab/nsp13356V356VgtCgtT88AY.420.000322
ORF1ab/nsp13356V356IGtcAtc88AY.430.000035
ORF1ab/nsp13356V356FGtcTtc88AY.50.000165
ORF1ab/nsp13356V356VgtCgtT88B.1.1.2140.000444
ORF1ab/nsp13356V356VgtCgtT88B.1.177.330.013158
ORF1ab/nsp13356V356VgtCgtT88B.1.3960.005646
ORF1ab/nsp13356V356VgtCgtT77AY.1160.002007
ORF1ab/nsp13356V356FGtcTtc77AY.260.000198
ORF1ab/nsp13356V356VgtCgtT77AY.60.000288
ORF1ab/nsp13356V356VgtCgtT67B0.000767
ORF1ab/nsp13356V356VgtCgtG17B0.000128
ORF1ab/nsp13356V356VgtCgtT77B.1.2800.05
ORF1ab/nsp13356V356FGtcTtc77P.10.00011
ORF1ab/nsp13356V356VgtCgtT77P.1.150.001626
ORF1ab/nsp13356V356VgtCgtT77P.70.030568
ORF1ab/nsp13356V356del1gtCgt-56All0.000001
ORF1ab/nsp13356V356del1Gtc-tc16All0
ORF1ab/nsp13356V356FGtcTtc66AY.100.00318
ORF1ab/nsp13356V356VgtCgtT66AY.116.10.001869
ORF1ab/nsp13356V356FGtcTtc66AY.1200.000223
ORF1ab/nsp13356V356VgtCgtT66AY.130.000966
ORF1ab/nsp13356V356VgtCgtT66AY.270.000388
ORF1ab/nsp13356V356AgTcgCc66AY.40.000009
ORF1ab/nsp13356V356FGtcTtc66AY.470.000187
ORF1ab/nsp13356V356VgtCgtT66AY.5.40.00166
ORF1ab/nsp13356V356FGtcTtc66AY.9.20.00022
ORF1ab/nsp13356V356FGtcTtc66AY.98.10.000291
ORF1ab/nsp13356V356FGtcTtc66B.1.1.1410.012072
ORF1ab/nsp13356V356VgtCgtT66B.1.1.280.001867
ORF1ab/nsp13356V356FGtcTtc66B.1.2210.000426
ORF1ab/nsp13356V356VgtCgtT66B.1.258.170.000624
ORF1ab/nsp13356V356FGtcTtc66B.1.360.000875
ORF1ab/nsp13356V356VgtCgtT56B.1.3610.006443
ORF1ab/nsp13356V356VgtCgtA16B.1.3610.001289
ORF1ab/nsp13356V356VgtCgtT66B.1.617.10.000774
ORF1ab/nsp13356V356VgtCgtT55A.10.001409
ORF1ab/nsp13356V356VgtCgtT55AY.1060.001674
ORF1ab/nsp13356V356FGtcTtc55AY.200.000194
ORF1ab/nsp13356V356VgtCgtT55AY.360.000741
ORF1ab/nsp13356V356IGtcAtc55AY.40.000008
ORF1ab/nsp13356V356VgtCgtT55AY.4.2.10.000745
ORF1ab/nsp13356V356FGtcTtc55AY.46.60.000361
ORF1ab/nsp13356V356VgtCgtT55AY.740.000578
ORF1ab/nsp13356V356VgtCgtT55AY.90.000338
ORF1ab/nsp13356V356VgtCgtT55AY.9.20.000184
ORF1ab/nsp13356V356VgtCgtT55AY.99.20.000461
ORF1ab/nsp13356V356VgtCgtT55AZ.20.004105
ORF1ab/nsp13356V356AgTcgCc55B.10.000046
ORF1ab/nsp13356V356VgtCgtT55B.1.1.250.002843
ORF1ab/nsp13356V356VgtCgtT55B.1.1.340.065789
ORF1ab/nsp13356V356VgtCgtT55B.1.1.4860.007886
ORF1ab/nsp13356V356VgtCgtT55B.1.3110.001373
ORF1ab/nsp13356V356VgtCgtT55B.1.4280.005102
ORF1ab/nsp13356V356VgtCgtT55B.1.5170.002135
ORF1ab/nsp13356V356VgtCgtT55B.1.5650.004052
ORF1ab/nsp13356V356VgtCgtT55B.1.5670.016667
ORF1ab/nsp13356V356AgTcgCc55B.1.617.20.000019
ORF1ab/nsp13356V356VgtCgtT55B.1.6200.00473
ORF1ab/nsp13356V356VgtCgtT55C.37.10.013089
ORF1ab/nsp13356V356VgtCgtT55R.10.00045
ORF1ab/nsp13356V356VgtCgtT44A.270.006623
ORF1ab/nsp13356V356AgTcgCc44AY.1030.000025
ORF1ab/nsp13356V356VgtCgtT44AY.1130.00057
ORF1ab/nsp13356V356VgtCgtT44AY.370.001264
ORF1ab/nsp13356V356FGtcTtc44AY.46.10.004107
ORF1ab/nsp13356V356VgtCgtT44AY.46.30.003735
ORF1ab/nsp13356V356VgtCgtT44AY.5.30.00135
ORF1ab/nsp13356V356VgtCgtT44AY.590.002119
ORF1ab/nsp13356V356VgtCgtT44AY.610.000419
ORF1ab/nsp13356V356VgtCgtT44AY.650.002132
ORF1ab/nsp13356V356VgtCgtT34AY.680.000821
ORF1ab/nsp13356V356VgtCgtA14AY.680.000274
ORF1ab/nsp13356V356VgtCgtT44AZ.50.014035
ORF1ab/nsp13356V356IGtcAtc44B.10.000037
ORF1ab/nsp13356V356VgtCgtT44B.1.1.3170.001647
ORF1ab/nsp13356V356FGtcTtc44B.1.1.470.02139
ORF1ab/nsp13356V356LGtcCtc44B.1.1.70.000004
ORF1ab/nsp13356V356FGtcTtc44B.1.1770.000053
ORF1ab/nsp13356V356VgtCgtT44B.1.177.210.000306
ORF1ab/nsp13356V356VgtCgtT44B.1.220.00527
ORF1ab/nsp13356V356VgtCgtT44B.1.3460.005242
ORF1ab/nsp13356V356VgtCgtT44B.1.3890.004008
ORF1ab/nsp13356V356VgtCgtT44B.1.4000.001716
ORF1ab/nsp13356V356VgtCgtT44B.1.4160.005076
ORF1ab/nsp13356V356VgtCgtT44C.80.017857
ORF1ab/nsp13356V356VgtCgtT44Q.30.00058
ORF1ab/nsp13356V356VgtCgtT33A.2.50.001497
ORF1ab/nsp13356V356FGtcTtc33A.300.428571
ORF1ab/nsp13356V356VgtCgtT33AY.140.000264
ORF1ab/nsp13356V356AgTcgCc33AY.290.000047
ORF1ab/nsp13356V356FGtcTtc33AY.340.000291
ORF1ab/nsp13356V356IGtcAtc33AY.440.000018
ORF1ab/nsp13356V356FGtcTtc33AY.450.000365
ORF1ab/nsp13356V356VgtCgtT33AY.560.004815
ORF1ab/nsp13356V356FGtcTtc33AY.590.001589
ORF1ab/nsp13356V356VgtCgtT33AY.620.001307
ORF1ab/nsp13356V356FGtcTtc33AY.70.000588
ORF1ab/nsp13356V356VgtCgtT33AY.70.000588
ORF1ab/nsp13356V356VgtCgtG23AY.730.001331
ORF1ab/nsp13356V356VgtCgtT13AY.730.000665
ORF1ab/nsp13356V356FGtcTtc33AY.770.003382
ORF1ab/nsp13356V356VgtCgtT33AY.860.00249
ORF1ab/nsp13356V356VgtCgtT33AY.880.002653
ORF1ab/nsp13356V356FGtcTtc33B.1.1.2140.000166
ORF1ab/nsp13356V356FGtcTtc33B.1.1.3050.011583
ORF1ab/nsp13356V356FGtcTtc33B.1.1.3120.005736
ORF1ab/nsp13356V356VgtCgtT33B.1.1.3160.002775
ORF1ab/nsp13356V356VgtCgtT33B.1.1.3890.018182
ORF1ab/nsp13356V356IGtcAtc33B.1.1.70.000003
ORF1ab/nsp13356V356AgTcgCc33B.1.1.70.000003
ORF1ab/nsp13356V356VgtCgtT33B.1.1.700.001023
ORF1ab/nsp13356V356FGtcTtc33B.1.1620.015075
ORF1ab/nsp13356V356GgTcgGc33B.1.1640.044776
ORF1ab/nsp13356V356VgtCgtT33B.1.177.120.000455
ORF1ab/nsp13356V356VgtCgtT33B.1.221.30.0025
ORF1ab/nsp13356V356VgtCgtT33B.1.2390.003663
ORF1ab/nsp13356V356VgtCgtT33B.1.2400.000647
ORF1ab/nsp13356V356VgtCgtT33B.1.3490.002144
ORF1ab/nsp13356V356GgTcgGc33B.1.360.000438
ORF1ab/nsp13356V356VgtCgtT33B.1.36.310.005254
ORF1ab/nsp13356V356VgtCgtT33B.1.3670.002377
ORF1ab/nsp13356V356VgtCgtT33B.1.3690.000856
ORF1ab/nsp13356V356VgtCgtT33B.1.3980.008929
ORF1ab/nsp13356V356VgtCgtT33B.1.4090.002344
ORF1ab/nsp13356V356VgtCgtT33B.1.4200.03125
ORF1ab/nsp13356V356AgTcgCc33B.1.4290.000071
ORF1ab/nsp13356V356VgtCgtT33B.1.4620.021739
ORF1ab/nsp13356V356VgtCgtT33B.1.466.20.001174
ORF1ab/nsp13356V356LGtcCtc33B.1.5250.000339
ORF1ab/nsp13356V356VgtCgtT33B.1.5370.06
ORF1ab/nsp13356V356VgtCgtT33B.1.5890.022727
ORF1ab/nsp13356V356IGtcAtc33B.1.6210.000266
ORF1ab/nsp13356V356FGtcTtc33B.1.6210.000266
ORF1ab/nsp13356V356VgtCgtT33B.1.621.10.001517
ORF1ab/nsp13356V356VgtCgtT33B.400.001093
ORF1ab/nsp13356V356VgtCgtT33C.160.003181
ORF1ab/nsp13356V356VgtCgtT33P.1.100.000808
ORF1ab/nsp13356V356VgtCgtT33P.1.20.003468
ORF1ab/nsp13356V356VgtCgtT33P.1.70.000958
ORF1ab/nsp13356V356VgtCgtT33W.30.015789
ORF1ab/nsp13356V356FGtcTtc22A.10.000564
ORF1ab/nsp13356V356delGTC---22All0
ORF1ab/nsp13356V356VgtCgtT22AY.1100.000225
ORF1ab/nsp13356V356FGtcTtc22AY.1170.000169
ORF1ab/nsp13356V356VgtCgtT22AY.1210.000271
ORF1ab/nsp13356V356VgtCgtT22AY.210.003795
ORF1ab/nsp13356V356FGtcTtc22AY.230.000139
ORF1ab/nsp13356V356FGtcTtc22AY.29.10.000441
ORF1ab/nsp13356V356VgtCgtT22AY.300.000791
ORF1ab/nsp13356V356VgtCgtT22AY.350.000466
ORF1ab/nsp13356V356VgtCgtT22AY.380.000999
ORF1ab/nsp13356V356FGtcTtc22AY.4.30.001684
ORF1ab/nsp13356V356VgtCgtT22AY.4.50.000215
ORF1ab/nsp13356V356VgtCgtT22AY.410.000588
ORF1ab/nsp13356V356VgtCgtT22AY.550.001835
ORF1ab/nsp13356V356VgtCgtT22AY.580.001815
ORF1ab/nsp13356V356FGtcTtc22AY.610.00021
ORF1ab/nsp13356V356VgtCgtT22AY.7.10.000225
ORF1ab/nsp13356V356VgtCgtT22AY.830.003448
ORF1ab/nsp13356V356VgtCgtT22AY.900.001369
ORF1ab/nsp13356V356VgtCgtT22B.1.1.1610.007067
ORF1ab/nsp13356V356VgtCgtT22B.1.1.1860.006873
ORF1ab/nsp13356V356FGtcTtc22B.1.1.2220.000408
ORF1ab/nsp13356V356FGtcTtc22B.1.1.2840.000215
ORF1ab/nsp13356V356VgtCgtT22B.1.1.3740.004751
ORF1ab/nsp13356V356VgtCgtT22B.1.1.3970.004505
ORF1ab/nsp13356V356VgtCgtT22B.1.1.4040.031746
ORF1ab/nsp13356V356VgtCgtT22B.1.1.4090.005666
ORF1ab/nsp13356V356VgtCgtT22B.1.1640.029851
ORF1ab/nsp13356V356FGtcTtc22B.1.177.330.003289
ORF1ab/nsp13356V356VgtCgtT22B.1.177.440.001038
ORF1ab/nsp13356V356VgtCgtT22B.1.177.600.000437
ORF1ab/nsp13356V356VgtCgtT22B.1.177.750.002081
ORF1ab/nsp13356V356VgtCgtT22B.1.1990.008264
ORF1ab/nsp13356V356AgTcgCc22B.1.20.000018
ORF1ab/nsp13356V356FGtcTtc22B.1.2060.001631
ORF1ab/nsp13356V356VgtCgtT22B.1.221.40.008333
ORF1ab/nsp13356V356VgtCgtT22B.1.258.70.003824
ORF1ab/nsp13356V356FGtcTtc22B.1.3110.000549
ORF1ab/nsp13356V356VgtCgtT22B.1.36.120.019231
ORF1ab/nsp13356V356VgtCgtT22B.1.36.180.00084
ORF1ab/nsp13356V356VgtCgtT22B.1.36.210.00432
ORF1ab/nsp13356V356VgtCgtT22B.1.36.220.002415
ORF1ab/nsp13356V356VgtCgtT22B.1.362.20.009434
ORF1ab/nsp13356V356FGtcTtc22B.1.4270.000101
ORF1ab/nsp13356V356VgtCgtT22B.1.4330.00639
ORF1ab/nsp13356V356VgtCgtT22B.1.4380.013072
ORF1ab/nsp13356V356VgtCgtT22B.1.4410.019231
ORF1ab/nsp13356V356FGtcTtc22B.1.5270.007407
ORF1ab/nsp13356V356VgtCgtT22B.1.5380.016129
ORF1ab/nsp13356V356VgtCgtT22B.1.5770.001375
ORF1ab/nsp13356V356VgtCgtT22B.1.6270.00404
ORF1ab/nsp13356V356FGtcTtc22B.1.9.50.011364
ORF1ab/nsp13356V356VgtCgtT22B.3.10.003317
ORF1ab/nsp13356V356IGtcAtc12P.10.000016
ORF1ab/nsp13356V356IGtCAtT12P.10.000016
ORF1ab/nsp13356V356VgtCgtT22P.1.120.000968
ORF1ab/nsp13356V356FGtcTtc22P.1.140.000096
ORF1ab/nsp13356V356FGtcTtc22R.10.00018
ORF1ab/nsp13356V356VgtCgtT11A0.000387
ORF1ab/nsp13356V356FGtcTtc11A0.000387
ORF1ab/nsp13356V356FGtcTtc11A.23.10.000704
ORF1ab/nsp13356V356VgtCgtT11A.280.002646
ORF1ab/nsp13356V356VgtCgtT11A.290.005319
ORF1ab/nsp13356V356VgtCgtT11A.30.002096
ORF1ab/nsp13356V356VgtCgtT11A.50.001923
ORF1ab/nsp13356V356FGtcTtc11A.50.001923
ORF1ab/nsp13356V356VgtCgtT11AA.50.016129
ORF1ab/nsp13356V356VgtCgtT11AA.60.016129
ORF1ab/nsp13356V356VgtCgtT11AE.80.000489
ORF1ab/nsp13356V356CGTcTGc11All0
ORF1ab/nsp13356V356DgTcgAc11All0
ORF1ab/nsp13356V356VgtCgtT11AY.1010.00049
ORF1ab/nsp13356V356IGtcAtc11AY.1020.000027
ORF1ab/nsp13356V356FGtcTtc11AY.1030.000006
ORF1ab/nsp13356V356AgTcgCc11AY.1070.000466
ORF1ab/nsp13356V356VgtCgtT11AY.1080.001103
ORF1ab/nsp13356V356VgtCgtT11AY.1090.00074
ORF1ab/nsp13356V356FGtcTtc11AY.1110.000183
ORF1ab/nsp13356V356FGtcTtc11AY.1130.000142
ORF1ab/nsp13356V356IGtcAtc11AY.1130.000142
ORF1ab/nsp13356V356FGtcTtc11AY.1160.000287
ORF1ab/nsp13356V356FGtcTtc11AY.1190.000035
ORF1ab/nsp13356V356IGtcAtc11AY.120.20.001285
ORF1ab/nsp13356V356FGtcTtc11AY.1210.000135
ORF1ab/nsp13356V356FGtcTtc11AY.140.000088
ORF1ab/nsp13356V356FGtcTtc11AY.16.10.00047
ORF1ab/nsp13356V356VgtCgtT11AY.190.00114
ORF1ab/nsp13356V356IGtcAtc11AY.200.000039
ORF1ab/nsp13356V356FGtcTtc11AY.210.001898
ORF1ab/nsp13356V356GgTcgGc11AY.290.000016
ORF1ab/nsp13356V356IGtcAtc11AY.290.000016
ORF1ab/nsp13356V356VgtCgtT11AY.29.10.000221
ORF1ab/nsp13356V356FGtcTtc11AY.30.00001
ORF1ab/nsp13356V356VgtCgtT11AY.3.10.000085
ORF1ab/nsp13356V356VgtCgtT11AY.34.10.00051
ORF1ab/nsp13356V356FGtcTtc11AY.390.000025
ORF1ab/nsp13356V356IGtcAtc11AY.390.000025
ORF1ab/nsp13356V356FGtcTtc11AY.39.10.00004
ORF1ab/nsp13356V356VgtCgtT11AY.39.20.001541
ORF1ab/nsp13356V356LGtcCtc11AY.40.000002
ORF1ab/nsp13356V356FGtcTtc11AY.4.2.10.000149
ORF1ab/nsp13356V356VgtCgtT11AY.4.30.000842
ORF1ab/nsp13356V356FGtcTtc11AY.4.40.000409
ORF1ab/nsp13356V356FGtcTtc11AY.4.50.000107
ORF1ab/nsp13356V356AgTcgCc11AY.400.000964
ORF1ab/nsp13356V356FGtcTtc11AY.410.000294
ORF1ab/nsp13356V356AgTcgCc11AY.440.000006
ORF1ab/nsp13356V356VgtCgtT11AY.450.000122
ORF1ab/nsp13356V356LGtcCtc11AY.460.000104
ORF1ab/nsp13356V356FGtcTtc11AY.460.000104
ORF1ab/nsp13356V356VgtCgtT11AY.46.20.000635
ORF1ab/nsp13356V356VgtCgtT11AY.46.40.000165
ORF1ab/nsp13356V356IGtcAtc11AY.540.000095
ORF1ab/nsp13356V356VgtCgtT11AY.570.000656
ORF1ab/nsp13356V356AgTcgCc11AY.590.00053
ORF1ab/nsp13356V356VgtCgtT11AY.700.000209
ORF1ab/nsp13356V356VgtCgtT11AY.710.000475
ORF1ab/nsp13356V356AgTcgCc11AY.750.000056
ORF1ab/nsp13356V356FGtcTtc11AY.750.000056
ORF1ab/nsp13356V356VgtCgtT11AY.75.10.00018
ORF1ab/nsp13356V356VgtCgtT11AY.790.001211
ORF1ab/nsp13356V356VgtCgtA11AY.80.000606
ORF1ab/nsp13356V356VgtCgtT11AY.800.001129
ORF1ab/nsp13356V356VgtCgtT11AY.820.001357
ORF1ab/nsp13356V356FGtcTtc11AY.840.000437
ORF1ab/nsp13356V356FGtcTtc11AY.850.000427
ORF1ab/nsp13356V356FGtcTtc11AY.90.000068
ORF1ab/nsp13356V356FGtcTtc11AY.9.10.000084
ORF1ab/nsp13356V356VgtCgtT11AY.910.00073
ORF1ab/nsp13356V356AgTcgCc11AY.930.000273
ORF1ab/nsp13356V356VgtCgtT11AY.930.000273
ORF1ab/nsp13356V356FGtcTtc11AY.930.000273
ORF1ab/nsp13356V356FGtcTtc11AY.940.000443
ORF1ab/nsp13356V356FGtcTtc11AY.980.000079
ORF1ab/nsp13356V356FGtcTtc11AY.990.001049
ORF1ab/nsp13356V356AgTcgCc11AY.99.20.000092
ORF1ab/nsp13356V356FGtcTtc11AZ.20.000821
ORF1ab/nsp13356V356VgtCgtT11AZ.40.003356
ORF1ab/nsp13356V356DgTcgAc11B.10.000009
ORF1ab/nsp13356V356del1Gtc-tc11B.10.000009
ORF1ab/nsp13356V356AgTcgCc11B.1.10.000018
ORF1ab/nsp13356V356AgTcgCc11B.1.1.10.000327
ORF1ab/nsp13356V356FGtcTtc11B.1.1.10.000327
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1420.017544
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1530.001095
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1630.007634
ORF1ab/nsp13356V356FGtcTtc11B.1.1.1910.004762
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1980.001468
ORF1ab/nsp13356V356AgTcgCc11B.1.1.2140.000055
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2190.005
ORF1ab/nsp13356V356FGtcTtc11B.1.1.2250.007194
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2540.011236
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2840.000107
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2890.002083
ORF1ab/nsp13356V356FGtcTtc11B.1.1.2910.000742
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2940.001266
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3050.003861
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3120.001912
ORF1ab/nsp13356V356FGtcTtc11B.1.1.3160.000925
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3400.045455
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3440.010753
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3630.005988
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3660.015873
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3720.000689
ORF1ab/nsp13356V356VgtCgtT11B.1.1.4120.007634
ORF1ab/nsp13356V356FGtcTtc11B.1.1.4120.007634
ORF1ab/nsp13356V356IGtcAtc11B.1.1.4250.045455
ORF1ab/nsp13356V356VgtCgtT11B.1.1.4280.009434
ORF1ab/nsp13356V356VgtCgtT11B.1.1.4460.076923
ORF1ab/nsp13356V356AgTcgCc11B.1.1.4640.001473
ORF1ab/nsp13356V356VgtCgtT11B.1.1.500.000679
ORF1ab/nsp13356V356FGtcTtc11B.1.1.500.000679
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5230.001563
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5250.005464
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5260.003546
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5280.004808
ORF1ab/nsp13356V356VgtCgtT11B.1.1.540.003021
ORF1ab/nsp13356V356FGtcTtc11B.1.1.570.011494
ORF1ab/nsp13356V356VgtCgtA11B.1.1.630.000386
ORF1ab/nsp13356V356del1gtCgt-11B.1.1.70.000001
ORF1ab/nsp13356V356CGTcTGc11B.1.1.70.000001
ORF1ab/nsp13356V356GgTcgGc11B.1.1.70.000001
ORF1ab/nsp13356V356VgtCgtT11B.1.1310.008772
ORF1ab/nsp13356V356VgtCgtT11B.1.1430.021277
ORF1ab/nsp13356V356VgtCgtT11B.1.1460.004237
ORF1ab/nsp13356V356VgtCgtT11B.1.160.140.002119
ORF1ab/nsp13356V356VgtCgtT11B.1.177.110.001698
ORF1ab/nsp13356V356FGtcTtc11B.1.177.120.000152
ORF1ab/nsp13356V356VgtCgtT11B.1.177.170.000821
ORF1ab/nsp13356V356FGtcTtc11B.1.177.180.00116
ORF1ab/nsp13356V356FGtcTtc11B.1.177.40.000211
ORF1ab/nsp13356V356VgtCgtT11B.1.177.510.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.177.520.001757
ORF1ab/nsp13356V356FGtcTtc11B.1.177.600.000218
ORF1ab/nsp13356V356VgtCgtT11B.1.177.790.002342
ORF1ab/nsp13356V356FGtcTtc11B.1.177.820.000477
ORF1ab/nsp13356V356FGtcTtc11B.1.177.830.001481
ORF1ab/nsp13356V356VgtCgtT11B.1.177.830.001481
ORF1ab/nsp13356V356FGtcTtc11B.1.177.90.001332
ORF1ab/nsp13356V356VgtCgtT11B.1.1940.04
ORF1ab/nsp13356V356del1gtCgt-11B.1.20.000009
ORF1ab/nsp13356V356VgtCgtT11B.1.221.20.004016
ORF1ab/nsp13356V356FGtcTtc11B.1.2230.002778
ORF1ab/nsp13356V356AgTcgCc11B.1.2230.002778
ORF1ab/nsp13356V356VgtCgtT11B.1.230.006061
ORF1ab/nsp13356V356FGtcTtc11B.1.2340.000132
ORF1ab/nsp13356V356VgtCgtT11B.1.2360.002053
ORF1ab/nsp13356V356VgtCgtT11B.1.2370.004975
ORF1ab/nsp13356V356VgtCgtT11B.1.258.140.00098
ORF1ab/nsp13356V356VgtCgtT11B.1.258.40.003448
ORF1ab/nsp13356V356VgtCgtT11B.1.2980.002114
ORF1ab/nsp13356V356FGtcTtc11B.1.3200.001245
ORF1ab/nsp13356V356VgtCgtT11B.1.3250.006897
ORF1ab/nsp13356V356VgtCgtT11B.1.3340.018182
ORF1ab/nsp13356V356VgtCgtG11B.1.351.30.000876
ORF1ab/nsp13356V356VgtCgtT11B.1.3560.001727
ORF1ab/nsp13356V356VgtCgtT11B.1.36.160.001425
ORF1ab/nsp13356V356VgtCgtT11B.1.36.240.006173
ORF1ab/nsp13356V356VgtCgtT11B.1.36.290.000517
ORF1ab/nsp13356V356VgtCgtA11B.1.36.80.001
ORF1ab/nsp13356V356FGtcTtc11B.1.3620.001541
ORF1ab/nsp13356V356FGtcTtc11B.1.3690.000285
ORF1ab/nsp13356V356IGtcAtc11B.1.3770.004566
ORF1ab/nsp13356V356FGtcTtc11B.1.3770.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.3770.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.3800.006623
ORF1ab/nsp13356V356VgtCgtA11B.1.3990.001934
ORF1ab/nsp13356V356VgtCgtT11B.1.4250.002994
ORF1ab/nsp13356V356FGtcTtc11B.1.4290.000024
ORF1ab/nsp13356V356VgtCgtT11B.1.438.10.000107
ORF1ab/nsp13356V356VgtCgtT11B.1.438.40.021277
ORF1ab/nsp13356V356VgtCgtT11B.1.4590.004082
ORF1ab/nsp13356V356VgtCgtT11B.1.4700.001404
ORF1ab/nsp13356V356VgtCgtT11B.1.4740.001901
ORF1ab/nsp13356V356IGtcAtc11B.1.4780.011765
ORF1ab/nsp13356V356VgtCgtT11B.1.4970.000315
ORF1ab/nsp13356V356FGtcTtc11B.1.4990.00105
ORF1ab/nsp13356V356VgtCgtT11B.1.5040.03125
ORF1ab/nsp13356V356FGtcTtc11B.1.5260.000024
ORF1ab/nsp13356V356VgtCgtT11B.1.5340.0125
ORF1ab/nsp13356V356VgtCgtT11B.1.5440.006024
ORF1ab/nsp13356V356VgtCgtT11B.1.5580.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.5610.000397
ORF1ab/nsp13356V356VgtCgtT11B.1.5820.000491
ORF1ab/nsp13356V356FGtcTtc11B.1.5960.000087
ORF1ab/nsp13356V356AgTcgCc11B.1.6090.000479
ORF1ab/nsp13356V356FGtcTtc11B.1.617.10.000129
ORF1ab/nsp13356V356del1gtCgt-11B.1.617.20.000004
ORF1ab/nsp13356V356LGtcCtc11B.1.617.20.000004
ORF1ab/nsp13356V356VgtCgtT11B.1.6190.000871
ORF1ab/nsp13356V356VgtCgtT11B.1.619.10.000641
ORF1ab/nsp13356V356del1gtCgt-11B.1.6200.000946
ORF1ab/nsp13356V356VgtCgtT11B.1.6280.000352
ORF1ab/nsp13356V356VgtCgtT11B.1.6290.013333
ORF1ab/nsp13356V356VgtCgtT11B.1.6340.003425
ORF1ab/nsp13356V356VgtCgtT11B.1.690.035714
ORF1ab/nsp13356V356VgtCgtT11B.1.910.002075
ORF1ab/nsp13356V356FGtcTtc11B.3.10.001658
ORF1ab/nsp13356V356delGTC---11B.340.013699
ORF1ab/nsp13356V356VgtCgtT11B.390.002331
ORF1ab/nsp13356V356VgtCgtT11B.4.70.010101
ORF1ab/nsp13356V356VgtCgtT11B.6.60.000889
ORF1ab/nsp13356V356VgtCgtT11C.140.004329
ORF1ab/nsp13356V356VgtCgtT11C.170.055556
ORF1ab/nsp13356V356VgtCgtT11C.180.002591
ORF1ab/nsp13356V356VgtCgtT11C.230.005814
ORF1ab/nsp13356V356VgtCgtT11C.300.001727
ORF1ab/nsp13356V356VgtCgtT11C.360.000911
ORF1ab/nsp13356V356FGtcTtc11C.360.000911
ORF1ab/nsp13356V356FGtcTtc11C.36.30.000567
ORF1ab/nsp13356V356FGtcTtc11D.20.000075
ORF1ab/nsp13356V356delGTC---11P.10.000016
ORF1ab/nsp13356V356IGtcAtc11P.1.150.000232
ORF1ab/nsp13356V356FGtcTtc11P.20.000187
ORF1ab/nsp13356V356VgtCgtA11P.30.001595
ORF1ab/nsp13356V356FGtcTtc11Q.10.000126
ORF1ab/nsp13356V356VgtCgtT11Q.20.000613
ORF1ab/nsp13356V356VgtCgtG11Q.40.000455
ORF1ab/nsp13356V356del1gtCgt-11R.10.00009
ORF1ab/nsp13356V356FGtcTtc11Z.10.00289