CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 356

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13356V356VV5680VsyngtCgtT982493150.94818817302-17304
ORF1ab/nsp13356V356VV5680VsyngtCgtG98243730.037968217302-17304
ORF1ab/nsp13356V356VV5680VsyngtCgtA98241360.013843617302-17304
ORF1ab/nsp13356V356FV5680FnonsynGtcTtc183818370.99945617302-17304
ORF1ab/nsp13356V356FV5680FnonsynGtCTtT183810.0005440717302-17304
ORF1ab/nsp13356V356IV5680InonsynGtcAtc65640.98461517302-17304
ORF1ab/nsp13356V356IV5680InonsynGtCAtT6510.015384617302-17304
ORF1ab/nsp13356V356AV5680AnonsyngTcgCc5454117302-17304
ORF1ab/nsp13356V356LV5680LnonsynGtcCtc1010117302-17304
ORF1ab/nsp13356V356GV5680GnonsyngTcgGc88117302-17304
ORF1ab/nsp13356V356del1V5680del1delgtCgt-650.83333317302-17304
ORF1ab/nsp13356V356del1V5680del1delGtc-tc610.16666717302-17304
ORF1ab/nsp13356V356delV5680deldelGTC---22117302-17304
ORF1ab/nsp13356V356DV5680DnonsyngTcgAc11117302-17304
ORF1ab/nsp13356V356CV5680CnonsynGTcTGc11117302-17304

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13356V356VgtCgtT93159824All0.001782
ORF1ab/nsp13356V356VgtCgtG3739824All0.000071
ORF1ab/nsp13356V356VgtCgtA1369824All0.000026
ORF1ab/nsp13356V356VgtCgtT19271937B.1.1.70.001725
ORF1ab/nsp13356V356VgtCgtA71937B.1.1.70.000006
ORF1ab/nsp13356V356VgtCgtG31937B.1.1.70.000003
ORF1ab/nsp13356V356FGtcTtc18371838All0.000351
ORF1ab/nsp13356V356FGtCTtT11838All0
ORF1ab/nsp13356V356VgtCgtT11771194AY.40.001832
ORF1ab/nsp13356V356VgtCgtA141194AY.40.000022
ORF1ab/nsp13356V356VgtCgtG31194AY.40.000005
ORF1ab/nsp13356V356FGtcTtc987987AY.40.001536
ORF1ab/nsp13356V356VgtCgtT565570B.1.617.20.002127
ORF1ab/nsp13356V356VgtCgtG3570B.1.617.20.000011
ORF1ab/nsp13356V356VgtCgtA2570B.1.617.20.000008
ORF1ab/nsp13356V356VgtCgtT457460AY.430.002025
ORF1ab/nsp13356V356VgtCgtA3460AY.430.000013
ORF1ab/nsp13356V356VgtCgtT375423B.1.20.003302
ORF1ab/nsp13356V356VgtCgtA48423B.1.20.000423
ORF1ab/nsp13356V356VgtCgtG319319AY.770.359639
ORF1ab/nsp13356V356VgtCgtT243246AY.1030.001509
ORF1ab/nsp13356V356VgtCgtA3246AY.1030.000019
ORF1ab/nsp13356V356VgtCgtT225225B.1.5050.986842
ORF1ab/nsp13356V356VgtCgtT205206AY.30.002039
ORF1ab/nsp13356V356VgtCgtG1206AY.30.00001
ORF1ab/nsp13356V356VgtCgtT203203Q.10.025644
ORF1ab/nsp13356V356VgtCgtT196197AY.440.001193
ORF1ab/nsp13356V356VgtCgtA1197AY.440.000006
ORF1ab/nsp13356V356VgtCgtT172190AY.250.001035
ORF1ab/nsp13356V356VgtCgtA18190AY.250.000108
ORF1ab/nsp13356V356VgtCgtT190190P.10.002993
ORF1ab/nsp13356V356VgtCgtT162163B.10.001484
ORF1ab/nsp13356V356VgtCgtG1163B.10.000009
ORF1ab/nsp13356V356VgtCgtT150152B.1.1770.001975
ORF1ab/nsp13356V356VgtCgtA1152B.1.1770.000013
ORF1ab/nsp13356V356VgtCgtG1152B.1.1770.000013
ORF1ab/nsp13356V356VgtCgtT123123B.1.2210.008737
ORF1ab/nsp13356V356VgtCgtT116116B.1.3510.003448
ORF1ab/nsp13356V356VgtCgtT109109AY.1140.025191
ORF1ab/nsp13356V356VgtCgtT104104AY.290.00164
ORF1ab/nsp13356V356VgtCgtT9091B.1.4290.002118
ORF1ab/nsp13356V356VgtCgtA191B.1.4290.000024
ORF1ab/nsp13356V356FGtcTtc8989B.1.1.70.00008
ORF1ab/nsp13356V356FGtcTtc8585B.1.617.20.00032
ORF1ab/nsp13356V356VgtCgtT8183B.1.10.001469
ORF1ab/nsp13356V356VgtCgtA283B.1.10.000036
ORF1ab/nsp13356V356FGtcTtc8383B.1.3560.143351
ORF1ab/nsp13356V356VgtCgtT7676AY.460.00791
ORF1ab/nsp13356V356VgtCgtT7373B.1.1.1760.032074
ORF1ab/nsp13356V356VgtCgtT6767B.1.5090.058009
ORF1ab/nsp13356V356IGtcAtc6465All0.000012
ORF1ab/nsp13356V356IGtCAtT165All0
ORF1ab/nsp13356V356VgtCgtT5555B.1.1.2050.204461
ORF1ab/nsp13356V356AgTcgCc5454All0.00001
ORF1ab/nsp13356V356VgtCgtT4949B.1.1.5190.001946
ORF1ab/nsp13356V356VgtCgtT4748AY.390.001161
ORF1ab/nsp13356V356VgtCgtA148AY.390.000025
ORF1ab/nsp13356V356VgtCgtT4848AY.50.000991
ORF1ab/nsp13356V356VgtCgtT4747B.1.160.210.959184
ORF1ab/nsp13356V356VgtCgtT4646AY.1020.00122
ORF1ab/nsp13356V356VgtCgtT4646AY.470.001431
ORF1ab/nsp13356V356VgtCgtT4445AY.260.001246
ORF1ab/nsp13356V356VgtCgtG145AY.260.000028
ORF1ab/nsp13356V356VgtCgtT4141B.1.5260.000964
ORF1ab/nsp13356V356VgtCgtT4141B.1.5750.012439
ORF1ab/nsp13356V356VgtCgtT3739AY.1190.001306
ORF1ab/nsp13356V356VgtCgtA239AY.1190.000071
ORF1ab/nsp13356V356FGtcTtc3939B.1.1.5190.001549
ORF1ab/nsp13356V356VgtCgtT3939B.1.2340.005146
ORF1ab/nsp13356V356VgtCgtT3838B.1.360.005544
ORF1ab/nsp13356V356FGtcTtc3636AY.250.000217
ORF1ab/nsp13356V356VgtCgtG3636B.1.214.10.72
ORF1ab/nsp13356V356FGtcTtc3535B.1.20.000308
ORF1ab/nsp13356V356VgtCgtT3434B.1.214.20.020384
ORF1ab/nsp13356V356VgtCgtT3434B.1.2650.043202
ORF1ab/nsp13356V356VgtCgtT3034B.1.4270.001515
ORF1ab/nsp13356V356VgtCgtA434B.1.4270.000202
ORF1ab/nsp13356V356FGtcTtc3333AY.430.000146
ORF1ab/nsp13356V356FGtcTtc3333B.1.5640.014055
ORF1ab/nsp13356V356VgtCgtT3232AY.1000.001472
ORF1ab/nsp13356V356VgtCgtT3030B.1.2430.002088
ORF1ab/nsp13356V356VgtCgtT3030N.100.882353
ORF1ab/nsp13356V356VgtCgtT2929B.1.1.1700.03616
ORF1ab/nsp13356V356VgtCgtT2929B.1.177.810.00549
ORF1ab/nsp13356V356VgtCgtT2929B.1.4360.029835
ORF1ab/nsp13356V356FGtcTtc2828AY.290.000442
ORF1ab/nsp13356V356VgtCgtT2828B.1.1.2220.005712
ORF1ab/nsp13356V356VgtCgtT2626AY.4.20.000564
ORF1ab/nsp13356V356FGtcTtc2425B.1.10.000435
ORF1ab/nsp13356V356FGtCTtT125B.1.10.000018
ORF1ab/nsp13356V356VgtCgtT2424AY.46.60.001733
ORF1ab/nsp13356V356VgtCgtT2424B.1.1.3260.042254
ORF1ab/nsp13356V356FGtcTtc2323AY.440.00014
ORF1ab/nsp13356V356FGtcTtc2121AY.1020.000557
ORF1ab/nsp13356V356VgtCgtT2121AY.46.10.021561
ORF1ab/nsp13356V356VgtCgtT2121AY.540.002002
ORF1ab/nsp13356V356VgtCgtT2121B.1.351.20.006354
ORF1ab/nsp13356V356VgtCgtT2121B.1.5250.002376
ORF1ab/nsp13356V356VgtCgtT2121P.1.140.001004
ORF1ab/nsp13356V356VgtCgtT2020AD.20.004379
ORF1ab/nsp13356V356VgtCgtT2020AY.240.008621
ORF1ab/nsp13356V356VgtCgtT2020AY.7.20.011186
ORF1ab/nsp13356V356VgtCgtT2020B.1.5960.001743
ORF1ab/nsp13356V356VgtCgtT1719AY.340.001648
ORF1ab/nsp13356V356VgtCgtA219AY.340.000194
ORF1ab/nsp13356V356VgtCgtT1919B.1.1.1890.028744
ORF1ab/nsp13356V356VgtCgtT1818AY.1170.001521
ORF1ab/nsp13356V356VgtCgtT1818AY.950.013699
ORF1ab/nsp13356V356VgtCgtT1818B.1.1600.000561
ORF1ab/nsp13356V356VgtCgtT1818P.1.170.002912
ORF1ab/nsp13356V356IGtcAtc1717AY.1030.000106
ORF1ab/nsp13356V356VgtCgtT1717B.1.177.860.003119
ORF1ab/nsp13356V356VgtCgtT1616AY.1200.000595
ORF1ab/nsp13356V356VgtCgtT1616AY.200.000622
ORF1ab/nsp13356V356FGtcTtc1616AY.4.20.000347
ORF1ab/nsp13356V356VgtCgtT1616AY.980.001264
ORF1ab/nsp13356V356VgtCgtA1616B.1.1.10.005227
ORF1ab/nsp13356V356VgtCgtT1616B.1.2580.001065
ORF1ab/nsp13356V356VgtCgtT1316C.370.001509
ORF1ab/nsp13356V356VgtCgtA316C.370.000348
ORF1ab/nsp13356V356FGtcTtc1515AY.540.00143
ORF1ab/nsp13356V356VgtCgtT1515AY.98.10.000726
ORF1ab/nsp13356V356FGtcTtc1414AY.330.000935
ORF1ab/nsp13356V356FGtcTtc1414B.1.36.180.005882
ORF1ab/nsp13356V356VgtCgtT1313AY.39.10.000515
ORF1ab/nsp13356V356FGtcTtc1313B.1.1.270.073446
ORF1ab/nsp13356V356VgtCgtT1313B.1.6210.001151
ORF1ab/nsp13356V356VgtCgtT1212AY.1180.000752
ORF1ab/nsp13356V356VgtCgtT1212AY.230.000837
ORF1ab/nsp13356V356VgtCgtT1212AY.840.005249
ORF1ab/nsp13356V356VgtCgtT1212B.1.1.2910.008909
ORF1ab/nsp13356V356VgtCgtT1212B.1.1.330.005051
ORF1ab/nsp13356V356VgtCgtT1212B.1.1470.00907
ORF1ab/nsp13356V356VgtCgtT1212B.1.6370.000877
ORF1ab/nsp13356V356VgtCgtT1111AY.330.000735
ORF1ab/nsp13356V356VgtCgtT1111AY.750.000616
ORF1ab/nsp13356V356VgtCgtT1111AY.890.053922
ORF1ab/nsp13356V356VgtCgtT1111B.1.160.320.04721
ORF1ab/nsp13356V356VgtCgtT1011B.1.5950.00261
ORF1ab/nsp13356V356VgtCgtA111B.1.5950.000261
ORF1ab/nsp13356V356VgtCgtT1010A.20.006618
ORF1ab/nsp13356V356LGtcCtc1010All0.000002
ORF1ab/nsp13356V356VgtCgtT1010AY.160.003797
ORF1ab/nsp13356V356FGtcTtc1010AY.5.40.002767
ORF1ab/nsp13356V356FGtcTtc1010B.10.000092
ORF1ab/nsp13356V356VgtCgtT1010B.1.1.3060.004384
ORF1ab/nsp13356V356VgtCgtT1010B.1.160.160.009294
ORF1ab/nsp13356V356VgtCgtT1010B.1.177.40.002111
ORF1ab/nsp13356V356AgTcgCc1010B.1.4090.007812
ORF1ab/nsp13356V356VgtCgtT1010D.20.00075
ORF1ab/nsp13356V356VgtCgtT1010P.1.10.003177
ORF1ab/nsp13356V356VgtCgtT1010P.20.001866
ORF1ab/nsp13356V356VgtCgtT99AY.530.002588
ORF1ab/nsp13356V356FGtcTtc99AY.99.20.000829
ORF1ab/nsp13356V356VgtCgtT99B.1.1.4340.003137
ORF1ab/nsp13356V356VgtCgtT99B.1.177.820.004296
ORF1ab/nsp13356V356IGtcAtc99B.1.617.20.000034
ORF1ab/nsp13356V356VgtCgtT99Q.80.001484
ORF1ab/nsp13356V356GgTcgGc88All0.000002
ORF1ab/nsp13356V356VgtCgtT88AY.1050.005145
ORF1ab/nsp13356V356VgtCgtT88AY.420.000322
ORF1ab/nsp13356V356IGtcAtc88AY.430.000035
ORF1ab/nsp13356V356FGtcTtc88AY.50.000165
ORF1ab/nsp13356V356VgtCgtT88B.1.1.2140.000444
ORF1ab/nsp13356V356VgtCgtT88B.1.177.330.013158
ORF1ab/nsp13356V356VgtCgtT88B.1.3960.005646
ORF1ab/nsp13356V356VgtCgtT77AY.1160.002007
ORF1ab/nsp13356V356FGtcTtc77AY.260.000198
ORF1ab/nsp13356V356VgtCgtT77AY.60.000288
ORF1ab/nsp13356V356VgtCgtT67B0.000767
ORF1ab/nsp13356V356VgtCgtG17B0.000128
ORF1ab/nsp13356V356VgtCgtT77B.1.2800.05
ORF1ab/nsp13356V356FGtcTtc77P.10.00011
ORF1ab/nsp13356V356VgtCgtT77P.1.150.001626
ORF1ab/nsp13356V356VgtCgtT77P.70.030568
ORF1ab/nsp13356V356del1gtCgt-56All0.000001
ORF1ab/nsp13356V356del1Gtc-tc16All0
ORF1ab/nsp13356V356FGtcTtc66AY.100.00318
ORF1ab/nsp13356V356VgtCgtT66AY.116.10.001869
ORF1ab/nsp13356V356FGtcTtc66AY.1200.000223
ORF1ab/nsp13356V356VgtCgtT66AY.130.000966
ORF1ab/nsp13356V356VgtCgtT66AY.270.000388
ORF1ab/nsp13356V356AgTcgCc66AY.40.000009
ORF1ab/nsp13356V356FGtcTtc66AY.470.000187
ORF1ab/nsp13356V356VgtCgtT66AY.5.40.00166
ORF1ab/nsp13356V356FGtcTtc66AY.9.20.00022
ORF1ab/nsp13356V356FGtcTtc66AY.98.10.000291
ORF1ab/nsp13356V356FGtcTtc66B.1.1.1410.012072
ORF1ab/nsp13356V356VgtCgtT66B.1.1.280.001867
ORF1ab/nsp13356V356FGtcTtc66B.1.2210.000426
ORF1ab/nsp13356V356VgtCgtT66B.1.258.170.000624
ORF1ab/nsp13356V356FGtcTtc66B.1.360.000875
ORF1ab/nsp13356V356VgtCgtT56B.1.3610.006443
ORF1ab/nsp13356V356VgtCgtA16B.1.3610.001289
ORF1ab/nsp13356V356VgtCgtT66B.1.617.10.000774
ORF1ab/nsp13356V356VgtCgtT55A.10.001409
ORF1ab/nsp13356V356VgtCgtT55AY.1060.001674
ORF1ab/nsp13356V356FGtcTtc55AY.200.000194
ORF1ab/nsp13356V356VgtCgtT55AY.360.000741
ORF1ab/nsp13356V356IGtcAtc55AY.40.000008
ORF1ab/nsp13356V356VgtCgtT55AY.4.2.10.000745
ORF1ab/nsp13356V356FGtcTtc55AY.46.60.000361
ORF1ab/nsp13356V356VgtCgtT55AY.740.000578
ORF1ab/nsp13356V356VgtCgtT55AY.90.000338
ORF1ab/nsp13356V356VgtCgtT55AY.9.20.000184
ORF1ab/nsp13356V356VgtCgtT55AY.99.20.000461
ORF1ab/nsp13356V356VgtCgtT55AZ.20.004105
ORF1ab/nsp13356V356AgTcgCc55B.10.000046
ORF1ab/nsp13356V356VgtCgtT55B.1.1.250.002843
ORF1ab/nsp13356V356VgtCgtT55B.1.1.340.065789
ORF1ab/nsp13356V356VgtCgtT55B.1.1.4860.007886
ORF1ab/nsp13356V356VgtCgtT55B.1.3110.001373
ORF1ab/nsp13356V356VgtCgtT55B.1.4280.005102
ORF1ab/nsp13356V356VgtCgtT55B.1.5170.002135
ORF1ab/nsp13356V356VgtCgtT55B.1.5650.004052
ORF1ab/nsp13356V356VgtCgtT55B.1.5670.016667
ORF1ab/nsp13356V356AgTcgCc55B.1.617.20.000019
ORF1ab/nsp13356V356VgtCgtT55B.1.6200.00473
ORF1ab/nsp13356V356VgtCgtT55C.37.10.013089
ORF1ab/nsp13356V356VgtCgtT55R.10.00045
ORF1ab/nsp13356V356VgtCgtT44A.270.006623
ORF1ab/nsp13356V356AgTcgCc44AY.1030.000025
ORF1ab/nsp13356V356VgtCgtT44AY.1130.00057
ORF1ab/nsp13356V356VgtCgtT44AY.370.001264
ORF1ab/nsp13356V356FGtcTtc44AY.46.10.004107
ORF1ab/nsp13356V356VgtCgtT44AY.46.30.003735
ORF1ab/nsp13356V356VgtCgtT44AY.5.30.00135
ORF1ab/nsp13356V356VgtCgtT44AY.590.002119
ORF1ab/nsp13356V356VgtCgtT44AY.610.000419
ORF1ab/nsp13356V356VgtCgtT44AY.650.002132
ORF1ab/nsp13356V356VgtCgtT34AY.680.000821
ORF1ab/nsp13356V356VgtCgtA14AY.680.000274
ORF1ab/nsp13356V356VgtCgtT44AZ.50.014035
ORF1ab/nsp13356V356IGtcAtc44B.10.000037
ORF1ab/nsp13356V356VgtCgtT44B.1.1.3170.001647
ORF1ab/nsp13356V356FGtcTtc44B.1.1.470.02139
ORF1ab/nsp13356V356LGtcCtc44B.1.1.70.000004
ORF1ab/nsp13356V356FGtcTtc44B.1.1770.000053
ORF1ab/nsp13356V356VgtCgtT44B.1.177.210.000306
ORF1ab/nsp13356V356VgtCgtT44B.1.220.00527
ORF1ab/nsp13356V356VgtCgtT44B.1.3460.005242
ORF1ab/nsp13356V356VgtCgtT44B.1.3890.004008
ORF1ab/nsp13356V356VgtCgtT44B.1.4000.001716
ORF1ab/nsp13356V356VgtCgtT44B.1.4160.005076
ORF1ab/nsp13356V356VgtCgtT44C.80.017857
ORF1ab/nsp13356V356VgtCgtT44Q.30.00058
ORF1ab/nsp13356V356VgtCgtT33A.2.50.001497
ORF1ab/nsp13356V356FGtcTtc33A.300.428571
ORF1ab/nsp13356V356VgtCgtT33AY.140.000264
ORF1ab/nsp13356V356AgTcgCc33AY.290.000047
ORF1ab/nsp13356V356FGtcTtc33AY.340.000291
ORF1ab/nsp13356V356IGtcAtc33AY.440.000018
ORF1ab/nsp13356V356FGtcTtc33AY.450.000365
ORF1ab/nsp13356V356VgtCgtT33AY.560.004815
ORF1ab/nsp13356V356FGtcTtc33AY.590.001589
ORF1ab/nsp13356V356VgtCgtT33AY.620.001307
ORF1ab/nsp13356V356FGtcTtc33AY.70.000588
ORF1ab/nsp13356V356VgtCgtT33AY.70.000588
ORF1ab/nsp13356V356VgtCgtG23AY.730.001331
ORF1ab/nsp13356V356VgtCgtT13AY.730.000665
ORF1ab/nsp13356V356FGtcTtc33AY.770.003382
ORF1ab/nsp13356V356VgtCgtT33AY.860.00249
ORF1ab/nsp13356V356VgtCgtT33AY.880.002653
ORF1ab/nsp13356V356FGtcTtc33B.1.1.2140.000166
ORF1ab/nsp13356V356FGtcTtc33B.1.1.3050.011583
ORF1ab/nsp13356V356FGtcTtc33B.1.1.3120.005736
ORF1ab/nsp13356V356VgtCgtT33B.1.1.3160.002775
ORF1ab/nsp13356V356VgtCgtT33B.1.1.3890.018182
ORF1ab/nsp13356V356IGtcAtc33B.1.1.70.000003
ORF1ab/nsp13356V356AgTcgCc33B.1.1.70.000003
ORF1ab/nsp13356V356VgtCgtT33B.1.1.700.001023
ORF1ab/nsp13356V356FGtcTtc33B.1.1620.015075
ORF1ab/nsp13356V356GgTcgGc33B.1.1640.044776
ORF1ab/nsp13356V356VgtCgtT33B.1.177.120.000455
ORF1ab/nsp13356V356VgtCgtT33B.1.221.30.0025
ORF1ab/nsp13356V356VgtCgtT33B.1.2390.003663
ORF1ab/nsp13356V356VgtCgtT33B.1.2400.000647
ORF1ab/nsp13356V356VgtCgtT33B.1.3490.002144
ORF1ab/nsp13356V356GgTcgGc33B.1.360.000438
ORF1ab/nsp13356V356VgtCgtT33B.1.36.310.005254
ORF1ab/nsp13356V356VgtCgtT33B.1.3670.002377
ORF1ab/nsp13356V356VgtCgtT33B.1.3690.000856
ORF1ab/nsp13356V356VgtCgtT33B.1.3980.008929
ORF1ab/nsp13356V356VgtCgtT33B.1.4090.002344
ORF1ab/nsp13356V356VgtCgtT33B.1.4200.03125
ORF1ab/nsp13356V356AgTcgCc33B.1.4290.000071
ORF1ab/nsp13356V356VgtCgtT33B.1.4620.021739
ORF1ab/nsp13356V356VgtCgtT33B.1.466.20.001174
ORF1ab/nsp13356V356LGtcCtc33B.1.5250.000339
ORF1ab/nsp13356V356VgtCgtT33B.1.5370.06
ORF1ab/nsp13356V356VgtCgtT33B.1.5890.022727
ORF1ab/nsp13356V356IGtcAtc33B.1.6210.000266
ORF1ab/nsp13356V356FGtcTtc33B.1.6210.000266
ORF1ab/nsp13356V356VgtCgtT33B.1.621.10.001517
ORF1ab/nsp13356V356VgtCgtT33B.400.001093
ORF1ab/nsp13356V356VgtCgtT33C.160.003181
ORF1ab/nsp13356V356VgtCgtT33P.1.100.000808
ORF1ab/nsp13356V356VgtCgtT33P.1.20.003468
ORF1ab/nsp13356V356VgtCgtT33P.1.70.000958
ORF1ab/nsp13356V356VgtCgtT33W.30.015789
ORF1ab/nsp13356V356FGtcTtc22A.10.000564
ORF1ab/nsp13356V356delGTC---22All0
ORF1ab/nsp13356V356VgtCgtT22AY.1100.000225
ORF1ab/nsp13356V356FGtcTtc22AY.1170.000169
ORF1ab/nsp13356V356VgtCgtT22AY.1210.000271
ORF1ab/nsp13356V356VgtCgtT22AY.210.003795
ORF1ab/nsp13356V356FGtcTtc22AY.230.000139
ORF1ab/nsp13356V356FGtcTtc22AY.29.10.000441
ORF1ab/nsp13356V356VgtCgtT22AY.300.000791
ORF1ab/nsp13356V356VgtCgtT22AY.350.000466
ORF1ab/nsp13356V356VgtCgtT22AY.380.000999
ORF1ab/nsp13356V356FGtcTtc22AY.4.30.001684
ORF1ab/nsp13356V356VgtCgtT22AY.4.50.000215
ORF1ab/nsp13356V356VgtCgtT22AY.410.000588
ORF1ab/nsp13356V356VgtCgtT22AY.550.001835
ORF1ab/nsp13356V356VgtCgtT22AY.580.001815
ORF1ab/nsp13356V356FGtcTtc22AY.610.00021
ORF1ab/nsp13356V356VgtCgtT22AY.7.10.000225
ORF1ab/nsp13356V356VgtCgtT22AY.830.003448
ORF1ab/nsp13356V356VgtCgtT22AY.900.001369
ORF1ab/nsp13356V356VgtCgtT22B.1.1.1610.007067
ORF1ab/nsp13356V356VgtCgtT22B.1.1.1860.006873
ORF1ab/nsp13356V356FGtcTtc22B.1.1.2220.000408
ORF1ab/nsp13356V356FGtcTtc22B.1.1.2840.000215
ORF1ab/nsp13356V356VgtCgtT22B.1.1.3740.004751
ORF1ab/nsp13356V356VgtCgtT22B.1.1.3970.004505
ORF1ab/nsp13356V356VgtCgtT22B.1.1.4040.031746
ORF1ab/nsp13356V356VgtCgtT22B.1.1.4090.005666
ORF1ab/nsp13356V356VgtCgtT22B.1.1640.029851
ORF1ab/nsp13356V356FGtcTtc22B.1.177.330.003289
ORF1ab/nsp13356V356VgtCgtT22B.1.177.440.001038
ORF1ab/nsp13356V356VgtCgtT22B.1.177.600.000437
ORF1ab/nsp13356V356VgtCgtT22B.1.177.750.002081
ORF1ab/nsp13356V356VgtCgtT22B.1.1990.008264
ORF1ab/nsp13356V356AgTcgCc22B.1.20.000018
ORF1ab/nsp13356V356FGtcTtc22B.1.2060.001631
ORF1ab/nsp13356V356VgtCgtT22B.1.221.40.008333
ORF1ab/nsp13356V356VgtCgtT22B.1.258.70.003824
ORF1ab/nsp13356V356FGtcTtc22B.1.3110.000549
ORF1ab/nsp13356V356VgtCgtT22B.1.36.120.019231
ORF1ab/nsp13356V356VgtCgtT22B.1.36.180.00084
ORF1ab/nsp13356V356VgtCgtT22B.1.36.210.00432
ORF1ab/nsp13356V356VgtCgtT22B.1.36.220.002415
ORF1ab/nsp13356V356VgtCgtT22B.1.362.20.009434
ORF1ab/nsp13356V356FGtcTtc22B.1.4270.000101
ORF1ab/nsp13356V356VgtCgtT22B.1.4330.00639
ORF1ab/nsp13356V356VgtCgtT22B.1.4380.013072
ORF1ab/nsp13356V356VgtCgtT22B.1.4410.019231
ORF1ab/nsp13356V356FGtcTtc22B.1.5270.007407
ORF1ab/nsp13356V356VgtCgtT22B.1.5380.016129
ORF1ab/nsp13356V356VgtCgtT22B.1.5770.001375
ORF1ab/nsp13356V356VgtCgtT22B.1.6270.00404
ORF1ab/nsp13356V356FGtcTtc22B.1.9.50.011364
ORF1ab/nsp13356V356VgtCgtT22B.3.10.003317
ORF1ab/nsp13356V356IGtcAtc12P.10.000016
ORF1ab/nsp13356V356IGtCAtT12P.10.000016
ORF1ab/nsp13356V356VgtCgtT22P.1.120.000968
ORF1ab/nsp13356V356FGtcTtc22P.1.140.000096
ORF1ab/nsp13356V356FGtcTtc22R.10.00018
ORF1ab/nsp13356V356VgtCgtT11A0.000387
ORF1ab/nsp13356V356FGtcTtc11A0.000387
ORF1ab/nsp13356V356FGtcTtc11A.23.10.000704
ORF1ab/nsp13356V356VgtCgtT11A.280.002646
ORF1ab/nsp13356V356VgtCgtT11A.290.005319
ORF1ab/nsp13356V356VgtCgtT11A.30.002096
ORF1ab/nsp13356V356VgtCgtT11A.50.001923
ORF1ab/nsp13356V356FGtcTtc11A.50.001923
ORF1ab/nsp13356V356VgtCgtT11AA.50.016129
ORF1ab/nsp13356V356VgtCgtT11AA.60.016129
ORF1ab/nsp13356V356VgtCgtT11AE.80.000489
ORF1ab/nsp13356V356CGTcTGc11All0
ORF1ab/nsp13356V356DgTcgAc11All0
ORF1ab/nsp13356V356VgtCgtT11AY.1010.00049
ORF1ab/nsp13356V356IGtcAtc11AY.1020.000027
ORF1ab/nsp13356V356FGtcTtc11AY.1030.000006
ORF1ab/nsp13356V356AgTcgCc11AY.1070.000466
ORF1ab/nsp13356V356VgtCgtT11AY.1080.001103
ORF1ab/nsp13356V356VgtCgtT11AY.1090.00074
ORF1ab/nsp13356V356FGtcTtc11AY.1110.000183
ORF1ab/nsp13356V356FGtcTtc11AY.1130.000142
ORF1ab/nsp13356V356IGtcAtc11AY.1130.000142
ORF1ab/nsp13356V356FGtcTtc11AY.1160.000287
ORF1ab/nsp13356V356FGtcTtc11AY.1190.000035
ORF1ab/nsp13356V356IGtcAtc11AY.120.20.001285
ORF1ab/nsp13356V356FGtcTtc11AY.1210.000135
ORF1ab/nsp13356V356FGtcTtc11AY.140.000088
ORF1ab/nsp13356V356FGtcTtc11AY.16.10.00047
ORF1ab/nsp13356V356VgtCgtT11AY.190.00114
ORF1ab/nsp13356V356IGtcAtc11AY.200.000039
ORF1ab/nsp13356V356FGtcTtc11AY.210.001898
ORF1ab/nsp13356V356GgTcgGc11AY.290.000016
ORF1ab/nsp13356V356IGtcAtc11AY.290.000016
ORF1ab/nsp13356V356VgtCgtT11AY.29.10.000221
ORF1ab/nsp13356V356FGtcTtc11AY.30.00001
ORF1ab/nsp13356V356VgtCgtT11AY.3.10.000085
ORF1ab/nsp13356V356VgtCgtT11AY.34.10.00051
ORF1ab/nsp13356V356FGtcTtc11AY.390.000025
ORF1ab/nsp13356V356IGtcAtc11AY.390.000025
ORF1ab/nsp13356V356FGtcTtc11AY.39.10.00004
ORF1ab/nsp13356V356VgtCgtT11AY.39.20.001541
ORF1ab/nsp13356V356LGtcCtc11AY.40.000002
ORF1ab/nsp13356V356FGtcTtc11AY.4.2.10.000149
ORF1ab/nsp13356V356VgtCgtT11AY.4.30.000842
ORF1ab/nsp13356V356FGtcTtc11AY.4.40.000409
ORF1ab/nsp13356V356FGtcTtc11AY.4.50.000107
ORF1ab/nsp13356V356AgTcgCc11AY.400.000964
ORF1ab/nsp13356V356FGtcTtc11AY.410.000294
ORF1ab/nsp13356V356AgTcgCc11AY.440.000006
ORF1ab/nsp13356V356VgtCgtT11AY.450.000122
ORF1ab/nsp13356V356LGtcCtc11AY.460.000104
ORF1ab/nsp13356V356FGtcTtc11AY.460.000104
ORF1ab/nsp13356V356VgtCgtT11AY.46.20.000635
ORF1ab/nsp13356V356VgtCgtT11AY.46.40.000165
ORF1ab/nsp13356V356IGtcAtc11AY.540.000095
ORF1ab/nsp13356V356VgtCgtT11AY.570.000656
ORF1ab/nsp13356V356AgTcgCc11AY.590.00053
ORF1ab/nsp13356V356VgtCgtT11AY.700.000209
ORF1ab/nsp13356V356VgtCgtT11AY.710.000475
ORF1ab/nsp13356V356AgTcgCc11AY.750.000056
ORF1ab/nsp13356V356FGtcTtc11AY.750.000056
ORF1ab/nsp13356V356VgtCgtT11AY.75.10.00018
ORF1ab/nsp13356V356VgtCgtT11AY.790.001211
ORF1ab/nsp13356V356VgtCgtA11AY.80.000606
ORF1ab/nsp13356V356VgtCgtT11AY.800.001129
ORF1ab/nsp13356V356VgtCgtT11AY.820.001357
ORF1ab/nsp13356V356FGtcTtc11AY.840.000437
ORF1ab/nsp13356V356FGtcTtc11AY.850.000427
ORF1ab/nsp13356V356FGtcTtc11AY.90.000068
ORF1ab/nsp13356V356FGtcTtc11AY.9.10.000084
ORF1ab/nsp13356V356VgtCgtT11AY.910.00073
ORF1ab/nsp13356V356AgTcgCc11AY.930.000273
ORF1ab/nsp13356V356VgtCgtT11AY.930.000273
ORF1ab/nsp13356V356FGtcTtc11AY.930.000273
ORF1ab/nsp13356V356FGtcTtc11AY.940.000443
ORF1ab/nsp13356V356FGtcTtc11AY.980.000079
ORF1ab/nsp13356V356FGtcTtc11AY.990.001049
ORF1ab/nsp13356V356AgTcgCc11AY.99.20.000092
ORF1ab/nsp13356V356FGtcTtc11AZ.20.000821
ORF1ab/nsp13356V356VgtCgtT11AZ.40.003356
ORF1ab/nsp13356V356DgTcgAc11B.10.000009
ORF1ab/nsp13356V356del1Gtc-tc11B.10.000009
ORF1ab/nsp13356V356AgTcgCc11B.1.10.000018
ORF1ab/nsp13356V356AgTcgCc11B.1.1.10.000327
ORF1ab/nsp13356V356FGtcTtc11B.1.1.10.000327
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1420.017544
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1530.001095
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1630.007634
ORF1ab/nsp13356V356FGtcTtc11B.1.1.1910.004762
ORF1ab/nsp13356V356VgtCgtT11B.1.1.1980.001468
ORF1ab/nsp13356V356AgTcgCc11B.1.1.2140.000055
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2190.005
ORF1ab/nsp13356V356FGtcTtc11B.1.1.2250.007194
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2540.011236
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2840.000107
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2890.002083
ORF1ab/nsp13356V356FGtcTtc11B.1.1.2910.000742
ORF1ab/nsp13356V356VgtCgtT11B.1.1.2940.001266
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3050.003861
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3120.001912
ORF1ab/nsp13356V356FGtcTtc11B.1.1.3160.000925
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3400.045455
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3440.010753
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3630.005988
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3660.015873
ORF1ab/nsp13356V356VgtCgtT11B.1.1.3720.000689
ORF1ab/nsp13356V356VgtCgtT11B.1.1.4120.007634
ORF1ab/nsp13356V356FGtcTtc11B.1.1.4120.007634
ORF1ab/nsp13356V356IGtcAtc11B.1.1.4250.045455
ORF1ab/nsp13356V356VgtCgtT11B.1.1.4280.009434
ORF1ab/nsp13356V356VgtCgtT11B.1.1.4460.076923
ORF1ab/nsp13356V356AgTcgCc11B.1.1.4640.001473
ORF1ab/nsp13356V356VgtCgtT11B.1.1.500.000679
ORF1ab/nsp13356V356FGtcTtc11B.1.1.500.000679
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5230.001563
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5250.005464
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5260.003546
ORF1ab/nsp13356V356VgtCgtT11B.1.1.5280.004808
ORF1ab/nsp13356V356VgtCgtT11B.1.1.540.003021
ORF1ab/nsp13356V356FGtcTtc11B.1.1.570.011494
ORF1ab/nsp13356V356VgtCgtA11B.1.1.630.000386
ORF1ab/nsp13356V356del1gtCgt-11B.1.1.70.000001
ORF1ab/nsp13356V356CGTcTGc11B.1.1.70.000001
ORF1ab/nsp13356V356GgTcgGc11B.1.1.70.000001
ORF1ab/nsp13356V356VgtCgtT11B.1.1310.008772
ORF1ab/nsp13356V356VgtCgtT11B.1.1430.021277
ORF1ab/nsp13356V356VgtCgtT11B.1.1460.004237
ORF1ab/nsp13356V356VgtCgtT11B.1.160.140.002119
ORF1ab/nsp13356V356VgtCgtT11B.1.177.110.001698
ORF1ab/nsp13356V356FGtcTtc11B.1.177.120.000152
ORF1ab/nsp13356V356VgtCgtT11B.1.177.170.000821
ORF1ab/nsp13356V356FGtcTtc11B.1.177.180.00116
ORF1ab/nsp13356V356FGtcTtc11B.1.177.40.000211
ORF1ab/nsp13356V356VgtCgtT11B.1.177.510.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.177.520.001757
ORF1ab/nsp13356V356FGtcTtc11B.1.177.600.000218
ORF1ab/nsp13356V356VgtCgtT11B.1.177.790.002342
ORF1ab/nsp13356V356FGtcTtc11B.1.177.820.000477
ORF1ab/nsp13356V356FGtcTtc11B.1.177.830.001481
ORF1ab/nsp13356V356VgtCgtT11B.1.177.830.001481
ORF1ab/nsp13356V356FGtcTtc11B.1.177.90.001332
ORF1ab/nsp13356V356VgtCgtT11B.1.1940.04
ORF1ab/nsp13356V356del1gtCgt-11B.1.20.000009
ORF1ab/nsp13356V356VgtCgtT11B.1.221.20.004016
ORF1ab/nsp13356V356FGtcTtc11B.1.2230.002778
ORF1ab/nsp13356V356AgTcgCc11B.1.2230.002778
ORF1ab/nsp13356V356VgtCgtT11B.1.230.006061
ORF1ab/nsp13356V356FGtcTtc11B.1.2340.000132
ORF1ab/nsp13356V356VgtCgtT11B.1.2360.002053
ORF1ab/nsp13356V356VgtCgtT11B.1.2370.004975
ORF1ab/nsp13356V356VgtCgtT11B.1.258.140.00098
ORF1ab/nsp13356V356VgtCgtT11B.1.258.40.003448
ORF1ab/nsp13356V356VgtCgtT11B.1.2980.002114
ORF1ab/nsp13356V356FGtcTtc11B.1.3200.001245
ORF1ab/nsp13356V356VgtCgtT11B.1.3250.006897
ORF1ab/nsp13356V356VgtCgtT11B.1.3340.018182
ORF1ab/nsp13356V356VgtCgtG11B.1.351.30.000876
ORF1ab/nsp13356V356VgtCgtT11B.1.3560.001727
ORF1ab/nsp13356V356VgtCgtT11B.1.36.160.001425
ORF1ab/nsp13356V356VgtCgtT11B.1.36.240.006173
ORF1ab/nsp13356V356VgtCgtT11B.1.36.290.000517
ORF1ab/nsp13356V356VgtCgtA11B.1.36.80.001
ORF1ab/nsp13356V356FGtcTtc11B.1.3620.001541
ORF1ab/nsp13356V356FGtcTtc11B.1.3690.000285
ORF1ab/nsp13356V356IGtcAtc11B.1.3770.004566
ORF1ab/nsp13356V356FGtcTtc11B.1.3770.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.3770.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.3800.006623
ORF1ab/nsp13356V356VgtCgtA11B.1.3990.001934
ORF1ab/nsp13356V356VgtCgtT11B.1.4250.002994
ORF1ab/nsp13356V356FGtcTtc11B.1.4290.000024
ORF1ab/nsp13356V356VgtCgtT11B.1.438.10.000107
ORF1ab/nsp13356V356VgtCgtT11B.1.438.40.021277
ORF1ab/nsp13356V356VgtCgtT11B.1.4590.004082
ORF1ab/nsp13356V356VgtCgtT11B.1.4700.001404
ORF1ab/nsp13356V356VgtCgtT11B.1.4740.001901
ORF1ab/nsp13356V356IGtcAtc11B.1.4780.011765
ORF1ab/nsp13356V356VgtCgtT11B.1.4970.000315
ORF1ab/nsp13356V356FGtcTtc11B.1.4990.00105
ORF1ab/nsp13356V356VgtCgtT11B.1.5040.03125
ORF1ab/nsp13356V356FGtcTtc11B.1.5260.000024
ORF1ab/nsp13356V356VgtCgtT11B.1.5340.0125
ORF1ab/nsp13356V356VgtCgtT11B.1.5440.006024
ORF1ab/nsp13356V356VgtCgtT11B.1.5580.004566
ORF1ab/nsp13356V356VgtCgtT11B.1.5610.000397
ORF1ab/nsp13356V356VgtCgtT11B.1.5820.000491
ORF1ab/nsp13356V356FGtcTtc11B.1.5960.000087
ORF1ab/nsp13356V356AgTcgCc11B.1.6090.000479
ORF1ab/nsp13356V356FGtcTtc11B.1.617.10.000129
ORF1ab/nsp13356V356del1gtCgt-11B.1.617.20.000004
ORF1ab/nsp13356V356LGtcCtc11B.1.617.20.000004
ORF1ab/nsp13356V356VgtCgtT11B.1.6190.000871
ORF1ab/nsp13356V356VgtCgtT11B.1.619.10.000641
ORF1ab/nsp13356V356del1gtCgt-11B.1.6200.000946
ORF1ab/nsp13356V356VgtCgtT11B.1.6280.000352
ORF1ab/nsp13356V356VgtCgtT11B.1.6290.013333
ORF1ab/nsp13356V356VgtCgtT11B.1.6340.003425
ORF1ab/nsp13356V356VgtCgtT11B.1.690.035714
ORF1ab/nsp13356V356VgtCgtT11B.1.910.002075
ORF1ab/nsp13356V356FGtcTtc11B.3.10.001658
ORF1ab/nsp13356V356delGTC---11B.340.013699
ORF1ab/nsp13356V356VgtCgtT11B.390.002331
ORF1ab/nsp13356V356VgtCgtT11B.4.70.010101
ORF1ab/nsp13356V356VgtCgtT11B.6.60.000889
ORF1ab/nsp13356V356VgtCgtT11C.140.004329
ORF1ab/nsp13356V356VgtCgtT11C.170.055556
ORF1ab/nsp13356V356VgtCgtT11C.180.002591
ORF1ab/nsp13356V356VgtCgtT11C.230.005814
ORF1ab/nsp13356V356VgtCgtT11C.300.001727
ORF1ab/nsp13356V356VgtCgtT11C.360.000911
ORF1ab/nsp13356V356FGtcTtc11C.360.000911
ORF1ab/nsp13356V356FGtcTtc11C.36.30.000567
ORF1ab/nsp13356V356FGtcTtc11D.20.000075
ORF1ab/nsp13356V356delGTC---11P.10.000016
ORF1ab/nsp13356V356IGtcAtc11P.1.150.000232
ORF1ab/nsp13356V356FGtcTtc11P.20.000187
ORF1ab/nsp13356V356VgtCgtA11P.30.001595
ORF1ab/nsp13356V356FGtcTtc11Q.10.000126
ORF1ab/nsp13356V356VgtCgtT11Q.20.000613
ORF1ab/nsp13356V356VgtCgtG11Q.40.000455
ORF1ab/nsp13356V356del1gtCgt-11R.10.00009
ORF1ab/nsp13356V356FGtcTtc11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.