CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 350 | S350L | S5674L | nonsyn | tCa | tTa | 4769 | 4767 | 0.999581 | 17284-17286 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4767 | 4769 | All | 0.000912 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 657 | 657 | AY.4 | 0.001023 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 358 | 358 | B.1.1.417 | 0.967568 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 335 | 335 | B.1.1.7 | 0.0003 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 301 | 301 | B.1.617.2 | 0.001133 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 281 | 281 | B.1 | 0.002574 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 229 | 231 | B.1.2 | 0.002016 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 160 | 160 | AY.120 | 0.005949 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 160 | 160 | AY.3 | 0.001591 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 158 | 158 | AY.44 | 0.000962 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 148 | 148 | AY.4.5 | 0.015909 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 140 | 140 | B.1.1 | 0.00254 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 116 | 116 | AY.43 | 0.000514 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 112 | 112 | B.1.621 | 0.009914 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 76 | 76 | B.1.603 | 0.808511 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 69 | 69 | AY.25 | 0.000415 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 64 | 64 | B.1.243 | 0.004453 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 63 | 63 | AY.29 | 0.000994 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 59 | 59 | A.2.5 | 0.029441 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 39 | 39 | AY.4.2 | 0.000846 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 38 | 38 | AY.119 | 0.001342 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 36 | 36 | B.1.429 | 0.000847 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 34 | 34 | P.1 | 0.000536 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 33 | 33 | AY.33 | 0.002204 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 33 | 33 | AY.5 | 0.000681 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 33 | 33 | B.1.177 | 0.000435 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 26 | 26 | AY.39 | 0.000642 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 23 | 23 | AY.92 | 0.006607 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 22 | 22 | AY.118 | 0.001378 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 22 | 22 | B.1.596 | 0.001917 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 21 | 21 | AY.86 | 0.017427 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 19 | 19 | B.1.177.84 | 0.126667 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 18 | 18 | AY.3.1 | 0.001535 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 16 | 16 | B.1.637 | 0.001169 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 15 | 15 | AY.8 | 0.009091 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 15 | 15 | B.1.36 | 0.002189 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 13 | 13 | AY.4.2.1 | 0.001937 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 13 | 13 | AY.6 | 0.000535 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 13 | 13 | B.1.177.65 | 0.008649 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 12 | 12 | B.1.1.70 | 0.004093 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 10 | 10 | AY.84 | 0.004374 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 10 | 10 | B.1.177.60 | 0.002184 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 10 | 10 | B.1.214.2 | 0.005995 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 10 | 10 | D.2 | 0.00075 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | AT.1 | 0.046154 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | AY.94 | 0.003984 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | B.1.1.230 | 0.082569 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 9 | 9 | B.1.604 | 0.155172 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 8 | 8 | AY.46.2 | 0.005083 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 8 | 8 | B | 0.001022 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 8 | 8 | B.1.1.219 | 0.04 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 7 | 7 | B.1.1.305 | 0.027027 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 6 | 6 | B.1.600 | 0.035088 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | AY.23.1 | 0.002087 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | B.1.1.207 | 0.00591 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | B.1.1.523 | 0.007812 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | A.2 | 0.002647 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.1.368 | 0.009259 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.36.10 | 0.014354 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.433 | 0.009585 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.204 | 0.006079 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.1.71 | 0.012121 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.595.1 | 0.011696 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | C.36.3.1 | 0.005435 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.447 | 0.035714 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.6.3 | 0.026316 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | N.8 | 0.03125 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp13 | 350 | S350L | tCa | tTa | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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