CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 348

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13348V348LV5672LnonsynGtgTtg716970920.98925917278-17280
ORF1ab/nsp13348V348LV5672LnonsynGtgCtg7169570.007950917278-17280
ORF1ab/nsp13348V348LV5672LnonsynGtGCtC7169200.0027897917278-17280
ORF1ab/nsp13348V348VV5672VsyngtGgtT687568020.98938217278-17280
ORF1ab/nsp13348V348VV5672VsyngtGgtA6875380.0055272717278-17280
ORF1ab/nsp13348V348VV5672VsyngtGgtC6875350.0050909117278-17280
ORF1ab/nsp13348V348AV5672AnonsyngTggCg9898117278-17280
ORF1ab/nsp13348V348del1V5672del1delgTgg-g80790.987517278-17280
ORF1ab/nsp13348V348del1V5672del1delGtg-tg8010.012517278-17280
ORF1ab/nsp13348V348MV5672MnonsynGtgAtg4747117278-17280
ORF1ab/nsp13348V348GV5672GnonsyngTggGg22117278-17280
ORF1ab/nsp13348V348delV5672deldelGTG---22117278-17280
ORF1ab/nsp13348V348TV5672TnonsynGTgACg11117278-17280

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13348V348LGtgTtg70927169All0.001356
ORF1ab/nsp13348V348LGtgCtg577169All0.000011
ORF1ab/nsp13348V348LGtGCtC207169All0.000004
ORF1ab/nsp13348V348VgtGgtT68026875All0.001301
ORF1ab/nsp13348V348VgtGgtA386875All0.000007
ORF1ab/nsp13348V348VgtGgtC356875All0.000007
ORF1ab/nsp13348V348LGtgTtg33663369AY.40.005239
ORF1ab/nsp13348V348LGtgCtg33369AY.40.000005
ORF1ab/nsp13348V348VgtGgtT18401846AY.40.002864
ORF1ab/nsp13348V348VgtGgtA61846AY.40.000009
ORF1ab/nsp13348V348VgtGgtT17861797B.1.1.70.001599
ORF1ab/nsp13348V348VgtGgtC71797B.1.1.70.000006
ORF1ab/nsp13348V348VgtGgtA41797B.1.1.70.000004
ORF1ab/nsp13348V348VgtGgtT927927B.1.1.3330.997847
ORF1ab/nsp13348V348LGtgTtg388397B.1.1.70.000347
ORF1ab/nsp13348V348LGtGCtC9397B.1.1.70.000008
ORF1ab/nsp13348V348LGtgTtg357357B.1.1.3030.986188
ORF1ab/nsp13348V348LGtgTtg297297B.1.177.230.961165
ORF1ab/nsp13348V348LGtgTtg224239B.1.617.20.000843
ORF1ab/nsp13348V348LGtgCtg15239B.1.617.20.000056
ORF1ab/nsp13348V348VgtGgtT178178AY.980.014061
ORF1ab/nsp13348V348VgtGgtT165169B.1.617.20.000621
ORF1ab/nsp13348V348VgtGgtA4169B.1.617.20.000015
ORF1ab/nsp13348V348LGtgTtg165165AY.50.003407
ORF1ab/nsp13348V348LGtgTtg143144AY.1030.000888
ORF1ab/nsp13348V348LGtgCtg1144AY.1030.000006
ORF1ab/nsp13348V348VgtGgtT135138AY.1030.000838
ORF1ab/nsp13348V348VgtGgtA3138AY.1030.000019
ORF1ab/nsp13348V348VgtGgtT134134B.1.2430.009324
ORF1ab/nsp13348V348LGtgTtg133134B.1.6210.011773
ORF1ab/nsp13348V348LGtgCtg1134B.1.6210.000089
ORF1ab/nsp13348V348VgtGgtT122124B.1.20.001074
ORF1ab/nsp13348V348VgtGgtA2124B.1.20.000018
ORF1ab/nsp13348V348LGtgTtg99100B.1.1770.001304
ORF1ab/nsp13348V348LGtgCtg1100B.1.1770.000013
ORF1ab/nsp13348V348AgTggCg9898All0.000019
ORF1ab/nsp13348V348VgtGgtT8790AY.430.000385
ORF1ab/nsp13348V348VgtGgtC290AY.430.000009
ORF1ab/nsp13348V348VgtGgtA190AY.430.000004
ORF1ab/nsp13348V348LGtgTtg8889AY.440.000536
ORF1ab/nsp13348V348LGtgCtg189AY.440.000006
ORF1ab/nsp13348V348LGtgTtg8889B.1.20.000775
ORF1ab/nsp13348V348LGtgCtg189B.1.20.000009
ORF1ab/nsp13348V348LGtgTtg8585AY.1020.002254
ORF1ab/nsp13348V348LGtgTtg8385AY.430.000368
ORF1ab/nsp13348V348LGtgCtg285AY.430.000009
ORF1ab/nsp13348V348VgtGgtT8383P.1.70.026501
ORF1ab/nsp13348V348del1gTgg-g7980All0.000015
ORF1ab/nsp13348V348del1Gtg-tg180All0
ORF1ab/nsp13348V348VgtGgtT7879B.1.1770.001027
ORF1ab/nsp13348V348VgtGgtC179B.1.1770.000013
ORF1ab/nsp13348V348LGtgTtg7171AY.290.00112
ORF1ab/nsp13348V348VgtGgtT6870AY.440.000414
ORF1ab/nsp13348V348VgtGgtA170AY.440.000006
ORF1ab/nsp13348V348VgtGgtC170AY.440.000006
ORF1ab/nsp13348V348LGtgTtg6870B.10.000623
ORF1ab/nsp13348V348LGtgCtg270B.10.000018
ORF1ab/nsp13348V348del1gTgg-g6666B.1.1.70.000059
ORF1ab/nsp13348V348LGtgTtg6465AY.30.000637
ORF1ab/nsp13348V348LGtgCtg165AY.30.00001
ORF1ab/nsp13348V348LGtgTtg6060AY.250.000361
ORF1ab/nsp13348V348VgtGgtT5656AY.1070.026095
ORF1ab/nsp13348V348LGtgTtg5151B.1.5890.386364
ORF1ab/nsp13348V348VgtGgtT4850B.10.00044
ORF1ab/nsp13348V348VgtGgtC150B.10.000009
ORF1ab/nsp13348V348VgtGgtA150B.10.000009
ORF1ab/nsp13348V348VgtGgtT4648AY.30.000458
ORF1ab/nsp13348V348VgtGgtA248AY.30.00002
ORF1ab/nsp13348V348MGtgAtg4747All0.000009
ORF1ab/nsp13348V348VgtGgtT4646AY.50.00095
ORF1ab/nsp13348V348LGtgTtg4444P.1.170.007117
ORF1ab/nsp13348V348VgtGgtT4243AY.4.20.000911
ORF1ab/nsp13348V348VgtGgtC143AY.4.20.000022
ORF1ab/nsp13348V348VgtGgtT4343AY.420.00173
ORF1ab/nsp13348V348LGtgTtg4242A.2.50.020958
ORF1ab/nsp13348V348VgtGgtT4040B.1.4290.000941
ORF1ab/nsp13348V348LGtgTtg4040B.1.5591
ORF1ab/nsp13348V348VgtGgtT3939AY.330.002604
ORF1ab/nsp13348V348AgTggCg3838B.1.6230.020386
ORF1ab/nsp13348V348LGtgTtg3737B.1.10.000671
ORF1ab/nsp13348V348LGtgTtg3636AY.330.002404
ORF1ab/nsp13348V348LGtgTtg3636AY.46.40.005922
ORF1ab/nsp13348V348LGtgTtg3434AY.390.00084
ORF1ab/nsp13348V348VgtGgtT3434P.10.000536
ORF1ab/nsp13348V348VgtGgtT3033B.1.10.000544
ORF1ab/nsp13348V348VgtGgtC233B.1.10.000036
ORF1ab/nsp13348V348VgtGgtA133B.1.10.000018
ORF1ab/nsp13348V348MGtgAtg3333B.1.1600.001029
ORF1ab/nsp13348V348VgtGgtT3131AY.9.20.001139
ORF1ab/nsp13348V348LGtgTtg3131P.10.000488
ORF1ab/nsp13348V348VgtGgtT3030B.1.360.004377
ORF1ab/nsp13348V348VgtGgtT2728AY.250.000162
ORF1ab/nsp13348V348VgtGgtC128AY.250.000006
ORF1ab/nsp13348V348LGtgCtg2528AY.910.018262
ORF1ab/nsp13348V348LGtgTtg328AY.910.002191
ORF1ab/nsp13348V348LGtgTtg2727AY.98.10.001308
ORF1ab/nsp13348V348LGtgTtg2626B.1.1.4200.026157
ORF1ab/nsp13348V348VgtGgtT2326P.20.004293
ORF1ab/nsp13348V348VgtGgtC326P.20.00056
ORF1ab/nsp13348V348VgtGgtT2525B.1.5260.000588
ORF1ab/nsp13348V348LGtgTtg2424B.1.1.3770.033149
ORF1ab/nsp13348V348LGtgTtg2424B.1.617.10.003095
ORF1ab/nsp13348V348VgtGgtT2022AY.390.000494
ORF1ab/nsp13348V348VgtGgtA222AY.390.000049
ORF1ab/nsp13348V348LGtgTtg2121AY.200.000816
ORF1ab/nsp13348V348LGtgTtg2121AY.4.50.002257
ORF1ab/nsp13348V348LGtgTtg2121AY.420.000845
ORF1ab/nsp13348V348LGtgTtg2121B.1.6280.0074
ORF1ab/nsp13348V348VgtGgtT2020AY.1020.00053
ORF1ab/nsp13348V348VgtGgtT2020B.1.3690.005705
ORF1ab/nsp13348V348VgtGgtT1919B.1.160.280.055556
ORF1ab/nsp13348V348VgtGgtT1919B.1.3200.023661
ORF1ab/nsp13348V348LGtgTtg1818AY.370.005689
ORF1ab/nsp13348V348LGtgTtg1818AY.99.20.001659
ORF1ab/nsp13348V348LGtgTtg1818B.1.1.5190.000715
ORF1ab/nsp13348V348LGtgTtg1818B.1.4290.000424
ORF1ab/nsp13348V348LGtgTtg1717AY.1200.000632
ORF1ab/nsp13348V348VgtGgtT1717B.1.1600.00053
ORF1ab/nsp13348V348VgtGgtT1717Q.30.002466
ORF1ab/nsp13348V348VgtGgtT1316B.1.1.5190.000516
ORF1ab/nsp13348V348VgtGgtC316B.1.1.5190.000119
ORF1ab/nsp13348V348LGtgTtg1616B.1.5260.000376
ORF1ab/nsp13348V348VgtGgtT1515AY.200.000583
ORF1ab/nsp13348V348LGtgTtg1515AY.4.20.000325
ORF1ab/nsp13348V348VgtGgtT1515B.1.2210.001065
ORF1ab/nsp13348V348LGtgTtg1414AU.30.029536
ORF1ab/nsp13348V348LGtgTtg1414AY.1210.001894
ORF1ab/nsp13348V348AgTggCg1414AY.40.000022
ORF1ab/nsp13348V348LGtgTtg1414AY.470.000435
ORF1ab/nsp13348V348LGtgTtg1414B.1.4270.000707
ORF1ab/nsp13348V348VgtGgtT1313AY.1200.000483
ORF1ab/nsp13348V348VgtGgtT1313AY.60.000535
ORF1ab/nsp13348V348VgtGgtT1212AY.340.001164
ORF1ab/nsp13348V348VgtGgtT1212AY.840.005249
ORF1ab/nsp13348V348LGtgTtg1212AY.90.000811
ORF1ab/nsp13348V348VgtGgtT1212AY.98.10.000581
ORF1ab/nsp13348V348LGtgTtg1212B.1.3510.000357
ORF1ab/nsp13348V348AgTggCg1212B.1.5820.005888
ORF1ab/nsp13348V348LGtgTtg1111AY.4.2.10.001639
ORF1ab/nsp13348V348LGtgTtg1111AY.450.001339
ORF1ab/nsp13348V348LGtgTtg1111AY.740.001272
ORF1ab/nsp13348V348LGtgTtg1111AY.750.000616
ORF1ab/nsp13348V348LGtgTtg1111AY.9.20.000404
ORF1ab/nsp13348V348LGtgTtg1010AY.1170.000845
ORF1ab/nsp13348V348LGtgTtg1010AY.230.000697
ORF1ab/nsp13348V348VgtGgtT1010AY.75.10.001803
ORF1ab/nsp13348V348VgtGgtT1010AY.920.002873
ORF1ab/nsp13348V348LGtgTtg1010B.1.360.001459
ORF1ab/nsp13348V348LGtGCtC910B.1.5250.001018
ORF1ab/nsp13348V348LGtgTtg110B.1.5250.000113
ORF1ab/nsp13348V348LGtgTtg1010C.360.009107
ORF1ab/nsp13348V348VgtGgtT99AY.1000.000414
ORF1ab/nsp13348V348LGtgTtg99AY.1180.000564
ORF1ab/nsp13348V348LGtgTtg99AY.460.000937
ORF1ab/nsp13348V348LGtgTtg99B.1.2430.000626
ORF1ab/nsp13348V348LGtgTtg99B.1.466.20.003521
ORF1ab/nsp13348V348LGtgTtg88AY.1000.000368
ORF1ab/nsp13348V348VgtGgtT88AY.1060.002679
ORF1ab/nsp13348V348LGtgTtg88AY.270.000518
ORF1ab/nsp13348V348VgtGgtT88AY.470.000249
ORF1ab/nsp13348V348LGtgTtg88AY.700.001668
ORF1ab/nsp13348V348LGtgTtg88B.1.1600.00025
ORF1ab/nsp13348V348VgtGgtT88B.1.3510.000238
ORF1ab/nsp13348V348VgtGgtT88B.1.5250.000905
ORF1ab/nsp13348V348LGtgTtg88B.1.6090.003835
ORF1ab/nsp13348V348LGtgTtg67AY.130.000966
ORF1ab/nsp13348V348LGtgCtg17AY.130.000161
ORF1ab/nsp13348V348VgtGgtT77AY.290.00011
ORF1ab/nsp13348V348LGtgTtg77AY.3.10.000597
ORF1ab/nsp13348V348LGtgTtg77AY.300.00277
ORF1ab/nsp13348V348VgtGgtT77AY.46.40.001152
ORF1ab/nsp13348V348LGtgTtg77B.1.177.730.003964
ORF1ab/nsp13348V348VgtGgtT77P.1.140.000335
ORF1ab/nsp13348V348LGtgTtg66AY.1060.002009
ORF1ab/nsp13348V348LGtgTtg66AY.1190.000212
ORF1ab/nsp13348V348VgtGgtT66AY.260.00017
ORF1ab/nsp13348V348VgtGgtT66B.1.1.3180.001811
ORF1ab/nsp13348V348VgtGgtT66B.1.214.20.003597
ORF1ab/nsp13348V348LGtgTtg66B.1.2210.000426
ORF1ab/nsp13348V348VgtGgtT66B.1.2580.000399
ORF1ab/nsp13348V348VgtGgtT66B.1.36.290.003104
ORF1ab/nsp13348V348LGtgTtg66B.1.36.290.003104
ORF1ab/nsp13348V348VgtGgtT66B.1.5770.004124
ORF1ab/nsp13348V348LGtgTtg66B.1.5960.000523
ORF1ab/nsp13348V348VgtGgtT56C.370.00058
ORF1ab/nsp13348V348VgtGgtA16C.370.000116
ORF1ab/nsp13348V348VgtGgtT66P.1.100.001617
ORF1ab/nsp13348V348VgtGgtT55A.10.001409
ORF1ab/nsp13348V348LGtgTtg55A.2.5.30.051546
ORF1ab/nsp13348V348VgtGgtT55AY.1130.000712
ORF1ab/nsp13348V348VgtGgtT55AY.1190.000177
ORF1ab/nsp13348V348VgtGgtT55AY.230.000349
ORF1ab/nsp13348V348LGtgTtg55AY.260.000142
ORF1ab/nsp13348V348LGtgTtg55AY.39.10.000198
ORF1ab/nsp13348V348LGtgTtg55AY.46.60.000361
ORF1ab/nsp13348V348VgtGgtT55AY.640.002976
ORF1ab/nsp13348V348LGtgTtg55AY.840.002187
ORF1ab/nsp13348V348LGtgTtg55AY.850.002136
ORF1ab/nsp13348V348VgtGgtT55AY.880.004421
ORF1ab/nsp13348V348LGtgTtg55AY.9.10.000419
ORF1ab/nsp13348V348VgtGgtT45AY.9.10.000335
ORF1ab/nsp13348V348VgtGgtA15AY.9.10.000084
ORF1ab/nsp13348V348AgTggCg55B.10.000046
ORF1ab/nsp13348V348LGtgTtg55B.1.1.1700.006234
ORF1ab/nsp13348V348LGtgTtg55B.1.1.2220.00102
ORF1ab/nsp13348V348LGtgTtg55B.1.1.2770.003794
ORF1ab/nsp13348V348LGtgTtg55B.1.1.3060.002192
ORF1ab/nsp13348V348VgtGgtT55B.1.110.30.003592
ORF1ab/nsp13348V348VgtGgtC55B.1.2360.010267
ORF1ab/nsp13348V348VgtGgtT55B.1.36.310.008757
ORF1ab/nsp13348V348LGtgTtg55B.1.595.10.02924
ORF1ab/nsp13348V348VgtGgtT55Q.10.000632
ORF1ab/nsp13348V348LGtgTtg55Q.10.000632
ORF1ab/nsp13348V348VgtGgtT55Q.80.000825
ORF1ab/nsp13348V348LGtgTtg44AY.120.10.001284
ORF1ab/nsp13348V348VgtGgtT44AY.3.10.000341
ORF1ab/nsp13348V348VgtGgtT44AY.39.10.000158
ORF1ab/nsp13348V348LGtgTtg44AY.4.40.001637
ORF1ab/nsp13348V348LGtgTtg44AY.5.30.00135
ORF1ab/nsp13348V348VgtGgtT44AY.570.002625
ORF1ab/nsp13348V348LGtgTtg44AY.610.000419
ORF1ab/nsp13348V348VgtGgtT34AY.610.000314
ORF1ab/nsp13348V348VgtGgtA14AY.610.000105
ORF1ab/nsp13348V348LGtgTtg44AY.640.002381
ORF1ab/nsp13348V348LGtgTtg44AY.7.20.002237
ORF1ab/nsp13348V348LGtgTtg44AY.980.000316
ORF1ab/nsp13348V348VgtGgtC44B.1.1.2310.012384
ORF1ab/nsp13348V348VgtGgtT34B.1.1.250.001706
ORF1ab/nsp13348V348VgtGgtA14B.1.1.250.000569
ORF1ab/nsp13348V348LGtgTtg44B.1.1.2840.00043
ORF1ab/nsp13348V348VgtGgtT44B.1.1.3110.001433
ORF1ab/nsp13348V348LGtgTtg44B.1.1.370.000771
ORF1ab/nsp13348V348AgTggCg44B.1.1.70.000004
ORF1ab/nsp13348V348LGtgTtg44B.1.177.320.005398
ORF1ab/nsp13348V348LGtgTtg44B.1.2400.000862
ORF1ab/nsp13348V348VgtGgtT44B.1.3010.023669
ORF1ab/nsp13348V348LGtgTtg44B.1.5090.003463
ORF1ab/nsp13348V348VgtGgtT34B.1.5960.000261
ORF1ab/nsp13348V348VgtGgtA14B.1.5960.000087
ORF1ab/nsp13348V348MGtgAtg44R.10.00036
ORF1ab/nsp13348V348VgtGgtT33AD.20.000657
ORF1ab/nsp13348V348LGtgTtg33AY.1130.000427
ORF1ab/nsp13348V348LGtgTtg33AY.1160.00086
ORF1ab/nsp13348V348VgtGgtT33AY.1160.00086
ORF1ab/nsp13348V348LGtgTtg33AY.120.2.10.001495
ORF1ab/nsp13348V348LGtgTtg33AY.360.000445
ORF1ab/nsp13348V348VgtGgtT33AY.450.000365
ORF1ab/nsp13348V348VgtGgtT33AY.46.60.000217
ORF1ab/nsp13348V348LGtgTtg33AY.480.001395
ORF1ab/nsp13348V348LGtgTtg33AY.510.002727
ORF1ab/nsp13348V348VgtGgtT33AY.520.002443
ORF1ab/nsp13348V348VgtGgtT33AY.690.00056
ORF1ab/nsp13348V348LGtgTtg33AY.710.001425
ORF1ab/nsp13348V348VgtGgtT33AY.730.001996
ORF1ab/nsp13348V348LGtgTtg33AY.75.10.000541
ORF1ab/nsp13348V348LGtgTtg33AY.770.003382
ORF1ab/nsp13348V348LGtgTtg33AY.880.002653
ORF1ab/nsp13348V348LGtgTtg33AY.950.002283
ORF1ab/nsp13348V348LGtgTtg33B0.000383
ORF1ab/nsp13348V348VgtGgtT33B0.000383
ORF1ab/nsp13348V348VgtGgtT33B.1.1.10.00098
ORF1ab/nsp13348V348LGtgTtg33B.1.1.1860.010309
ORF1ab/nsp13348V348LGtgTtg33B.1.1.280.000934
ORF1ab/nsp13348V348VgtGgtT33B.1.1.500.002037
ORF1ab/nsp13348V348VgtGgtT33B.1.1.630.001157
ORF1ab/nsp13348V348LGtgTtg33B.1.1110.003525
ORF1ab/nsp13348V348VgtGgtT33B.1.177.600.000655
ORF1ab/nsp13348V348LGtgTtg33B.1.177.750.003122
ORF1ab/nsp13348V348del1gTgg-g33B.1.177.820.001432
ORF1ab/nsp13348V348VgtGgtT33B.1.3110.000824
ORF1ab/nsp13348V348del1gTgg-g33B.1.3510.000089
ORF1ab/nsp13348V348LGtgTtg33B.1.36.170.001482
ORF1ab/nsp13348V348LGtgCtg23B.1.3690.00057
ORF1ab/nsp13348V348LGtgTtg13B.1.3690.000285
ORF1ab/nsp13348V348VgtGgtT33B.1.3990.005803
ORF1ab/nsp13348V348LGtgTtg33B.1.4970.000944
ORF1ab/nsp13348V348LGtgTtg33B.1.5950.000783
ORF1ab/nsp13348V348LGtgTtg33B.1.5990.010949
ORF1ab/nsp13348V348LGtgTtg33B.1.6370.000219
ORF1ab/nsp13348V348AgTggCg33P.10.000047
ORF1ab/nsp13348V348LGtgTtg33P.1.140.000143
ORF1ab/nsp13348V348LGtgTtg33P.1.70.000958
ORF1ab/nsp13348V348LGtgTtg33P.20.00056
ORF1ab/nsp13348V348LGtgTtg22A.10.000564
ORF1ab/nsp13348V348LGtgTtg22AD.20.000438
ORF1ab/nsp13348V348GgTggGg22All0
ORF1ab/nsp13348V348delGTG---22All0
ORF1ab/nsp13348V348VgtGgtT22AY.1050.001286
ORF1ab/nsp13348V348LGtgTtg22AY.1110.000366
ORF1ab/nsp13348V348LGtgTtg22AY.116.10.000623
ORF1ab/nsp13348V348VgtGgtT22AY.116.10.000623
ORF1ab/nsp13348V348VgtGgtT22AY.1170.000169
ORF1ab/nsp13348V348LGtgTtg22AY.120.000632
ORF1ab/nsp13348V348VgtGgtT22AY.1210.000271
ORF1ab/nsp13348V348LGtgTtg22AY.140.000176
ORF1ab/nsp13348V348LGtgTtg22AY.240.000862
ORF1ab/nsp13348V348AgTggCg22AY.30.00002
ORF1ab/nsp13348V348MGtgAtg22AY.390.000049
ORF1ab/nsp13348V348AgTggCg22AY.390.000049
ORF1ab/nsp13348V348LGtgTtg22AY.46.20.001271
ORF1ab/nsp13348V348del1gTgg-g22AY.520.001629
ORF1ab/nsp13348V348LGtgTtg22AY.580.001815
ORF1ab/nsp13348V348VgtGgtT22AY.600.001876
ORF1ab/nsp13348V348VgtGgtT22AY.740.000231
ORF1ab/nsp13348V348VgtGgtT22AY.790.002421
ORF1ab/nsp13348V348LGtgTtg22AY.870.001665
ORF1ab/nsp13348V348VgtGgtT22AY.90.000135
ORF1ab/nsp13348V348LGtgTtg22AY.920.000575
ORF1ab/nsp13348V348VgtGgtT22AY.950.001522
ORF1ab/nsp13348V348LGtgTtg22AY.99.10.003106
ORF1ab/nsp13348V348VgtGgtT22B.1.1.1280.014184
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2010.04878
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2160.001781
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2200.003717
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2430.008163
ORF1ab/nsp13348V348VgtGgtT22B.1.1.280.000622
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2840.000215
ORF1ab/nsp13348V348VgtGgtT22B.1.1.3220.017544
ORF1ab/nsp13348V348VgtGgtT22B.1.1.390.001019
ORF1ab/nsp13348V348VgtGgtT22B.1.1.4160.00181
ORF1ab/nsp13348V348LGtgTtg22B.1.1.4320.002532
ORF1ab/nsp13348V348VgtGgtT22B.1.1.4480.004065
ORF1ab/nsp13348V348LGtgTtg22B.1.1.5210.010695
ORF1ab/nsp13348V348VgtGgtT22B.1.1.700.000682
ORF1ab/nsp13348V348VgtGgtT22B.1.1260.002551
ORF1ab/nsp13348V348VgtGgtT22B.1.1390.001466
ORF1ab/nsp13348V348del1gTgg-g22B.1.1600.000062
ORF1ab/nsp13348V348LGtgTtg22B.1.160.200.017857
ORF1ab/nsp13348V348AgTggCg22B.1.1770.000026
ORF1ab/nsp13348V348VgtGgtT22B.1.177.330.003289
ORF1ab/nsp13348V348LGtgTtg22B.1.177.440.001038
ORF1ab/nsp13348V348VgtGgtT22B.1.177.520.003515
ORF1ab/nsp13348V348VgtGgtT12B.1.177.730.000566
ORF1ab/nsp13348V348VgtGgtA12B.1.177.730.000566
ORF1ab/nsp13348V348VgtGgtT22B.1.177.760.004988
ORF1ab/nsp13348V348VgtGgtT22B.1.177.770.001452
ORF1ab/nsp13348V348LGtgTtg22B.1.177.810.000379
ORF1ab/nsp13348V348LGtgTtg22B.1.177.850.01087
ORF1ab/nsp13348V348LGtgTtg22B.1.177.860.000367
ORF1ab/nsp13348V348LGtgTtg22B.1.2220.003384
ORF1ab/nsp13348V348VgtGgtT22B.1.2340.000264
ORF1ab/nsp13348V348LGtgTtg22B.1.2390.002442
ORF1ab/nsp13348V348LGtgTtg22B.1.258.160.003273
ORF1ab/nsp13348V348LGtgTtg22B.1.351.50.001199
ORF1ab/nsp13348V348LGtgTtg22B.1.36.90.006431
ORF1ab/nsp13348V348LGtgTtg22B.1.3960.001411
ORF1ab/nsp13348V348LGtgTtg22B.1.4160.002538
ORF1ab/nsp13348V348AgTggCg22B.1.5740.004301
ORF1ab/nsp13348V348LGtgTtg22B.1.5790.022472
ORF1ab/nsp13348V348LGtgTtg22B.1.5820.000981
ORF1ab/nsp13348V348VgtGgtT22B.1.6090.000959
ORF1ab/nsp13348V348MGtgAtg22B.1.617.20.000008
ORF1ab/nsp13348V348VgtGgtT22B.1.6210.000177
ORF1ab/nsp13348V348VgtGgtT22B.1.6370.000146
ORF1ab/nsp13348V348VgtGgtT22B.60.00182
ORF1ab/nsp13348V348VgtGgtT22C.360.001821
ORF1ab/nsp13348V348AgTggCg22C.36.30.001134
ORF1ab/nsp13348V348LGtgTtg22C.370.000232
ORF1ab/nsp13348V348LGtgTtg22D.20.00015
ORF1ab/nsp13348V348VgtGgtC12P.1.120.000484
ORF1ab/nsp13348V348VgtGgtT12P.1.120.000484
ORF1ab/nsp13348V348LGtgTtg22P.1.150.000465
ORF1ab/nsp13348V348VgtGgtT22P.70.008734
ORF1ab/nsp13348V348VgtGgtT11A0.000387
ORF1ab/nsp13348V348VgtGgtT11A.2.40.003367
ORF1ab/nsp13348V348VgtGgtT11A.230.010526
ORF1ab/nsp13348V348LGtgTtg11A.270.001656
ORF1ab/nsp13348V348LGtgTtg11AE.10.011364
ORF1ab/nsp13348V348TGTgACg11All0
ORF1ab/nsp13348V348VgtGgtT11AP.10.001502
ORF1ab/nsp13348V348VgtGgtT11AY.100.00053
ORF1ab/nsp13348V348VgtGgtT11AY.1080.001103
ORF1ab/nsp13348V348LGtgTtg11AY.1090.00074
ORF1ab/nsp13348V348VgtGgtT11AY.1090.00074
ORF1ab/nsp13348V348VgtGgtT11AY.110.001339
ORF1ab/nsp13348V348VgtGgtT11AY.1110.000183
ORF1ab/nsp13348V348VgtGgtT11AY.1180.000063
ORF1ab/nsp13348V348GgTggGg11AY.1180.000063
ORF1ab/nsp13348V348VgtGgtT11AY.120.000316
ORF1ab/nsp13348V348VgtGgtT11AY.160.00038
ORF1ab/nsp13348V348VgtGgtT11AY.190.00114
ORF1ab/nsp13348V348LGtgTtg11AY.210.001898
ORF1ab/nsp13348V348LGtgTtg11AY.220.002092
ORF1ab/nsp13348V348LGtgTtg11AY.23.10.000417
ORF1ab/nsp13348V348VgtGgtT11AY.240.000431
ORF1ab/nsp13348V348LGtgTtg11AY.29.10.000221
ORF1ab/nsp13348V348LGtgTtg11AY.320.000532
ORF1ab/nsp13348V348LGtgTtg11AY.340.000097
ORF1ab/nsp13348V348VgtGgtT11AY.34.10.00051
ORF1ab/nsp13348V348VgtGgtT11AY.350.000233
ORF1ab/nsp13348V348VgtGgtT11AY.370.000316
ORF1ab/nsp13348V348VgtGgtT11AY.380.000499
ORF1ab/nsp13348V348LGtgTtg11AY.4.10.000737
ORF1ab/nsp13348V348VgtGgtT11AY.4.50.000107
ORF1ab/nsp13348V348LGtgTtg11AY.410.000294
ORF1ab/nsp13348V348AgTggCg11AY.450.000122
ORF1ab/nsp13348V348VgtGgtA11AY.46.20.000635
ORF1ab/nsp13348V348VgtGgtT11AY.46.50.000198
ORF1ab/nsp13348V348MGtgAtg11AY.470.000031
ORF1ab/nsp13348V348VgtGgtT11AY.480.000465
ORF1ab/nsp13348V348LGtgTtg11AY.490.003195
ORF1ab/nsp13348V348AgTggCg11AY.50.000021
ORF1ab/nsp13348V348VgtGgtT11AY.5.20.002463
ORF1ab/nsp13348V348VgtGgtT11AY.5.40.000277
ORF1ab/nsp13348V348LGtgTtg11AY.530.000288
ORF1ab/nsp13348V348LGtgTtg11AY.550.000917
ORF1ab/nsp13348V348VgtGgtT11AY.620.000436
ORF1ab/nsp13348V348LGtgTtg11AY.650.000533
ORF1ab/nsp13348V348LGtgTtg11AY.680.000274
ORF1ab/nsp13348V348MGtgAtg11AY.680.000274
ORF1ab/nsp13348V348VgtGgtT11AY.680.000274
ORF1ab/nsp13348V348LGtgTtg11AY.690.000187
ORF1ab/nsp13348V348VgtGgtT11AY.7.10.000113
ORF1ab/nsp13348V348LGtgTtg11AY.7.10.000113
ORF1ab/nsp13348V348VgtGgtT11AY.710.000475
ORF1ab/nsp13348V348LGtgTtg11AY.720.001361
ORF1ab/nsp13348V348VgtGgtT11AY.720.001361
ORF1ab/nsp13348V348LGtgTtg11AY.730.000665
ORF1ab/nsp13348V348LGtgTtg11AY.780.001541
ORF1ab/nsp13348V348LGtgTtg11AY.80.000606
ORF1ab/nsp13348V348VgtGgtT11AY.870.000833
ORF1ab/nsp13348V348LGtgTtg11AY.900.000684
ORF1ab/nsp13348V348VgtGgtT11AY.930.000273
ORF1ab/nsp13348V348LGtgTtg11AY.940.000443
ORF1ab/nsp13348V348LGtgTtg11AY.960.002075
ORF1ab/nsp13348V348LGtgTtg11AY.990.001049
ORF1ab/nsp13348V348VgtGgtT11AZ.10.000867
ORF1ab/nsp13348V348VgtGgtT11AZ.50.003509
ORF1ab/nsp13348V348GgTggGg11B0.000128
ORF1ab/nsp13348V348MGtgAtg11B.10.000009
ORF1ab/nsp13348V348AgTggCg11B.1.10.000018
ORF1ab/nsp13348V348LGtgTtg11B.1.1.1130.006993
ORF1ab/nsp13348V348LGtgTtg11B.1.1.1170.009709
ORF1ab/nsp13348V348VgtGgtA11B.1.1.1590.004673
ORF1ab/nsp13348V348LGtgTtg11B.1.1.1870.00885
ORF1ab/nsp13348V348LGtgTtg11B.1.1.2140.000055
ORF1ab/nsp13348V348VgtGgtT11B.1.1.2170.003636
ORF1ab/nsp13348V348VgtGgtA11B.1.1.2220.000204
ORF1ab/nsp13348V348LGtgTtg11B.1.1.30.008696
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3060.000438
ORF1ab/nsp13348V348LGtgTtg11B.1.1.3110.000358
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3260.001761
ORF1ab/nsp13348V348VgtGgtT11B.1.1.330.000421
ORF1ab/nsp13348V348LGtgTtg11B.1.1.330.000421
ORF1ab/nsp13348V348LGtgTtg11B.1.1.3540.004386
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3690.000446
ORF1ab/nsp13348V348VgtGgtT11B.1.1.370.000193
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3880.045455
ORF1ab/nsp13348V348LGtgTtg11B.1.1.4250.045455
ORF1ab/nsp13348V348LGtgTtg11B.1.1.4290.004608
ORF1ab/nsp13348V348LGtgTtg11B.1.1.440.00241
ORF1ab/nsp13348V348VgtGgtT11B.1.1.440.00241
ORF1ab/nsp13348V348AgTggCg11B.1.1.450.014085
ORF1ab/nsp13348V348LGtgTtg11B.1.1.500.000679
ORF1ab/nsp13348V348VgtGgtT11B.1.1.510.001718
ORF1ab/nsp13348V348LGtgTtg11B.1.1.510.001718
ORF1ab/nsp13348V348LGtgTtg11B.1.1.5230.001563
ORF1ab/nsp13348V348LGtgTtg11B.1.1.5260.003546
ORF1ab/nsp13348V348VgtGgtT11B.1.1.80.003584
ORF1ab/nsp13348V348LGtgTtg11B.1.110.30.000718
ORF1ab/nsp13348V348LGtgTtg11B.1.1150.021739
ORF1ab/nsp13348V348LGtgTtg11B.1.1260.001276
ORF1ab/nsp13348V348LGtgTtg11B.1.160.150.00495
ORF1ab/nsp13348V348LGtgTtg11B.1.160.160.000929
ORF1ab/nsp13348V348LGtgTtg11B.1.177.110.001698
ORF1ab/nsp13348V348VgtGgtT11B.1.177.120.000152
ORF1ab/nsp13348V348VgtGgtT11B.1.177.140.006098
ORF1ab/nsp13348V348LGtgTtg11B.1.177.170.000821
ORF1ab/nsp13348V348AgTggCg11B.1.177.350.000691
ORF1ab/nsp13348V348VgtGgtT11B.1.177.40.000211
ORF1ab/nsp13348V348LGtgTtg11B.1.177.450.000381
ORF1ab/nsp13348V348VgtGgtT11B.1.177.570.000281
ORF1ab/nsp13348V348LGtgTtg11B.1.177.580.001332
ORF1ab/nsp13348V348VgtGgtT11B.1.177.580.001332
ORF1ab/nsp13348V348VgtGgtC11B.1.177.60.000977
ORF1ab/nsp13348V348del1gTgg-g11B.1.177.60.000977
ORF1ab/nsp13348V348LGtgTtg11B.1.177.650.000665
ORF1ab/nsp13348V348LGtgTtg11B.1.177.70.000165
ORF1ab/nsp13348V348VgtGgtT11B.1.177.750.001041
ORF1ab/nsp13348V348LGtgTtg11B.1.177.790.002342
ORF1ab/nsp13348V348AgTggCg11B.1.177.830.001481
ORF1ab/nsp13348V348VgtGgtT11B.1.177.860.000183
ORF1ab/nsp13348V348LGtgTtg11B.1.1790.003759
ORF1ab/nsp13348V348LGtgTtg11B.1.1920.009259
ORF1ab/nsp13348V348LGtgTtg11B.1.1990.004132
ORF1ab/nsp13348V348AgTggCg11B.1.20.000009
ORF1ab/nsp13348V348MGtgAtg11B.1.20.000009
ORF1ab/nsp13348V348LGtgTtg11B.1.214.20.0006
ORF1ab/nsp13348V348VgtGgtT11B.1.220.001318
ORF1ab/nsp13348V348LGtgTtg11B.1.220.001318
ORF1ab/nsp13348V348VgtGgtT11B.1.2320.000537
ORF1ab/nsp13348V348LGtgTtg11B.1.2340.000132
ORF1ab/nsp13348V348LGtgTtg11B.1.2350.002519
ORF1ab/nsp13348V348LGtgTtg11B.1.2360.002053
ORF1ab/nsp13348V348VgtGgtT11B.1.2400.000216
ORF1ab/nsp13348V348AgTggCg11B.1.2430.00007
ORF1ab/nsp13348V348VgtGgtT11B.1.243.10.022222
ORF1ab/nsp13348V348VgtGgtT11B.1.2470.014925
ORF1ab/nsp13348V348LGtgTtg11B.1.2580.000067
ORF1ab/nsp13348V348LGtgTtg11B.1.3010.005917
ORF1ab/nsp13348V348LGtGCtC11B.1.3110.000275
ORF1ab/nsp13348V348LGtgTtg11B.1.3330.010526
ORF1ab/nsp13348V348LGtgTtg11B.1.3360.002439
ORF1ab/nsp13348V348MGtgAtg11B.1.3510.00003
ORF1ab/nsp13348V348VgtGgtT11B.1.351.30.000876
ORF1ab/nsp13348V348LGtgTtg11B.1.351.30.000876
ORF1ab/nsp13348V348VgtGgtT11B.1.351.50.0006
ORF1ab/nsp13348V348del1gTgg-g11B.1.36.10.00114
ORF1ab/nsp13348V348LGtgCtg11B.1.36.360.000602
ORF1ab/nsp13348V348LGtgTtg11B.1.36.80.001
ORF1ab/nsp13348V348VgtGgtT11B.1.3660.004878
ORF1ab/nsp13348V348VgtGgtT11B.1.3670.000792
ORF1ab/nsp13348V348LGtgTtg11B.1.3670.000792
ORF1ab/nsp13348V348VgtGgtT11B.1.3890.001002
ORF1ab/nsp13348V348LGtgTtg11B.1.3980.002976
ORF1ab/nsp13348V348LGtgTtg11B.1.4000.000429
ORF1ab/nsp13348V348LGtgTtg11B.1.416.10.001563
ORF1ab/nsp13348V348AgTggCg11B.1.4170.028571
ORF1ab/nsp13348V348AgTggCg11B.1.4270.00005
ORF1ab/nsp13348V348LGtgTtg11B.1.4360.001029
ORF1ab/nsp13348V348VgtGgtT11B.1.4360.001029
ORF1ab/nsp13348V348VgtGgtT11B.1.438.10.000107
ORF1ab/nsp13348V348LGtgTtg11B.1.438.10.000107
ORF1ab/nsp13348V348VgtGgtT11B.1.4410.009615
ORF1ab/nsp13348V348LGtgTtg11B.1.4460.02
ORF1ab/nsp13348V348VgtGgtT11B.1.4620.007246
ORF1ab/nsp13348V348LGtgTtg11B.1.4740.001901
ORF1ab/nsp13348V348LGtgTtg11B.1.4800.002488
ORF1ab/nsp13348V348VgtGgtT11B.1.4970.000315
ORF1ab/nsp13348V348LGtgTtg11B.1.4990.00105
ORF1ab/nsp13348V348VgtGgtT11B.1.5170.000427
ORF1ab/nsp13348V348LGtgTtg11B.1.5210.004975
ORF1ab/nsp13348V348AgTggCg11B.1.5260.000024
ORF1ab/nsp13348V348LGtgTtg11B.1.5320.006211
ORF1ab/nsp13348V348VgtGgtT11B.1.5420.03125
ORF1ab/nsp13348V348VgtGgtT11B.1.5560.007519
ORF1ab/nsp13348V348LGtgTtg11B.1.5600.00463
ORF1ab/nsp13348V348del1Gtg-tg11B.1.5640.000426
ORF1ab/nsp13348V348LGtgTtg11B.1.564.10.001577
ORF1ab/nsp13348V348VgtGgtT11B.1.5730.006098
ORF1ab/nsp13348V348LGtgTtg11B.1.5760.000907
ORF1ab/nsp13348V348MGtgAtg11B.1.5760.000907
ORF1ab/nsp13348V348LGtgTtg11B.1.5770.000687
ORF1ab/nsp13348V348VgtGgtT11B.1.5820.000491
ORF1ab/nsp13348V348VgtGgtA11B.1.5950.000261
ORF1ab/nsp13348V348AgTggCg11B.1.5960.000087
ORF1ab/nsp13348V348VgtGgtT11B.1.6040.017241
ORF1ab/nsp13348V348LGtgTtg11B.1.6120.002653
ORF1ab/nsp13348V348VgtGgtT11B.1.617.10.000129
ORF1ab/nsp13348V348TGTgACg11B.1.617.20.000004
ORF1ab/nsp13348V348LGtgTtg11B.1.6190.000871
ORF1ab/nsp13348V348LGtgTtg11B.1.621.10.000506
ORF1ab/nsp13348V348VgtGgtT11B.1.6230.000536
ORF1ab/nsp13348V348LGtgTtg11B.1.6250.002353
ORF1ab/nsp13348V348LGtGCtC11B.1.6360.006711
ORF1ab/nsp13348V348LGtgTtg11B.1.80.001972
ORF1ab/nsp13348V348delGTG---11B.340.013699
ORF1ab/nsp13348V348LGtgTtg11B.400.000364
ORF1ab/nsp13348V348VgtGgtA11C.160.00106
ORF1ab/nsp13348V348LGtgTtg11C.2.10.006667
ORF1ab/nsp13348V348VgtGgtT11C.36.30.000567
ORF1ab/nsp13348V348VgtGgtT11C.37.10.002618
ORF1ab/nsp13348V348VgtGgtC11D.20.000075
ORF1ab/nsp13348V348VgtGgtT11N.50.001767
ORF1ab/nsp13348V348LGtgTtg11N.80.03125
ORF1ab/nsp13348V348delGTG---11P.10.000016
ORF1ab/nsp13348V348LGtgTtg11P.1.10.000318
ORF1ab/nsp13348V348VgtGgtT11P.1.10.000318
ORF1ab/nsp13348V348LGtgTtg11P.1.110.010204
ORF1ab/nsp13348V348LGtgTtg11P.1.120.000484
ORF1ab/nsp13348V348VgtGgtT11P.1.130.000898
ORF1ab/nsp13348V348VgtGgtT11P.1.150.000232
ORF1ab/nsp13348V348LGtgTtg11P.1.20.001156
ORF1ab/nsp13348V348LGtgTtg11Q.30.000145
ORF1ab/nsp13348V348LGtgTtg11Q.80.000165
ORF1ab/nsp13348V348del1gTgg-g11R.10.00009
ORF1ab/nsp13348V348VgtGgtC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.