CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 348

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13348V348LV5672LnonsynGtgTtg716970920.98925917278-17280
ORF1ab/nsp13348V348LV5672LnonsynGtgCtg7169570.007950917278-17280
ORF1ab/nsp13348V348LV5672LnonsynGtGCtC7169200.0027897917278-17280
ORF1ab/nsp13348V348VV5672VsyngtGgtT687568020.98938217278-17280
ORF1ab/nsp13348V348VV5672VsyngtGgtA6875380.0055272717278-17280
ORF1ab/nsp13348V348VV5672VsyngtGgtC6875350.0050909117278-17280
ORF1ab/nsp13348V348AV5672AnonsyngTggCg9898117278-17280
ORF1ab/nsp13348V348del1V5672del1delgTgg-g80790.987517278-17280
ORF1ab/nsp13348V348del1V5672del1delGtg-tg8010.012517278-17280
ORF1ab/nsp13348V348MV5672MnonsynGtgAtg4747117278-17280
ORF1ab/nsp13348V348GV5672GnonsyngTggGg22117278-17280
ORF1ab/nsp13348V348delV5672deldelGTG---22117278-17280
ORF1ab/nsp13348V348TV5672TnonsynGTgACg11117278-17280

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13348V348LGtgTtg70927169All0.001356
ORF1ab/nsp13348V348LGtgCtg577169All0.000011
ORF1ab/nsp13348V348LGtGCtC207169All0.000004
ORF1ab/nsp13348V348VgtGgtT68026875All0.001301
ORF1ab/nsp13348V348VgtGgtA386875All0.000007
ORF1ab/nsp13348V348VgtGgtC356875All0.000007
ORF1ab/nsp13348V348LGtgTtg33663369AY.40.005239
ORF1ab/nsp13348V348LGtgCtg33369AY.40.000005
ORF1ab/nsp13348V348VgtGgtT18401846AY.40.002864
ORF1ab/nsp13348V348VgtGgtA61846AY.40.000009
ORF1ab/nsp13348V348VgtGgtT17861797B.1.1.70.001599
ORF1ab/nsp13348V348VgtGgtC71797B.1.1.70.000006
ORF1ab/nsp13348V348VgtGgtA41797B.1.1.70.000004
ORF1ab/nsp13348V348VgtGgtT927927B.1.1.3330.997847
ORF1ab/nsp13348V348LGtgTtg388397B.1.1.70.000347
ORF1ab/nsp13348V348LGtGCtC9397B.1.1.70.000008
ORF1ab/nsp13348V348LGtgTtg357357B.1.1.3030.986188
ORF1ab/nsp13348V348LGtgTtg297297B.1.177.230.961165
ORF1ab/nsp13348V348LGtgTtg224239B.1.617.20.000843
ORF1ab/nsp13348V348LGtgCtg15239B.1.617.20.000056
ORF1ab/nsp13348V348VgtGgtT178178AY.980.014061
ORF1ab/nsp13348V348VgtGgtT165169B.1.617.20.000621
ORF1ab/nsp13348V348VgtGgtA4169B.1.617.20.000015
ORF1ab/nsp13348V348LGtgTtg165165AY.50.003407
ORF1ab/nsp13348V348LGtgTtg143144AY.1030.000888
ORF1ab/nsp13348V348LGtgCtg1144AY.1030.000006
ORF1ab/nsp13348V348VgtGgtT135138AY.1030.000838
ORF1ab/nsp13348V348VgtGgtA3138AY.1030.000019
ORF1ab/nsp13348V348VgtGgtT134134B.1.2430.009324
ORF1ab/nsp13348V348LGtgTtg133134B.1.6210.011773
ORF1ab/nsp13348V348LGtgCtg1134B.1.6210.000089
ORF1ab/nsp13348V348VgtGgtT122124B.1.20.001074
ORF1ab/nsp13348V348VgtGgtA2124B.1.20.000018
ORF1ab/nsp13348V348LGtgTtg99100B.1.1770.001304
ORF1ab/nsp13348V348LGtgCtg1100B.1.1770.000013
ORF1ab/nsp13348V348AgTggCg9898All0.000019
ORF1ab/nsp13348V348VgtGgtT8790AY.430.000385
ORF1ab/nsp13348V348VgtGgtC290AY.430.000009
ORF1ab/nsp13348V348VgtGgtA190AY.430.000004
ORF1ab/nsp13348V348LGtgTtg8889AY.440.000536
ORF1ab/nsp13348V348LGtgCtg189AY.440.000006
ORF1ab/nsp13348V348LGtgTtg8889B.1.20.000775
ORF1ab/nsp13348V348LGtgCtg189B.1.20.000009
ORF1ab/nsp13348V348LGtgTtg8585AY.1020.002254
ORF1ab/nsp13348V348LGtgTtg8385AY.430.000368
ORF1ab/nsp13348V348LGtgCtg285AY.430.000009
ORF1ab/nsp13348V348VgtGgtT8383P.1.70.026501
ORF1ab/nsp13348V348del1gTgg-g7980All0.000015
ORF1ab/nsp13348V348del1Gtg-tg180All0
ORF1ab/nsp13348V348VgtGgtT7879B.1.1770.001027
ORF1ab/nsp13348V348VgtGgtC179B.1.1770.000013
ORF1ab/nsp13348V348LGtgTtg7171AY.290.00112
ORF1ab/nsp13348V348VgtGgtT6870AY.440.000414
ORF1ab/nsp13348V348VgtGgtA170AY.440.000006
ORF1ab/nsp13348V348VgtGgtC170AY.440.000006
ORF1ab/nsp13348V348LGtgTtg6870B.10.000623
ORF1ab/nsp13348V348LGtgCtg270B.10.000018
ORF1ab/nsp13348V348del1gTgg-g6666B.1.1.70.000059
ORF1ab/nsp13348V348LGtgTtg6465AY.30.000637
ORF1ab/nsp13348V348LGtgCtg165AY.30.00001
ORF1ab/nsp13348V348LGtgTtg6060AY.250.000361
ORF1ab/nsp13348V348VgtGgtT5656AY.1070.026095
ORF1ab/nsp13348V348LGtgTtg5151B.1.5890.386364
ORF1ab/nsp13348V348VgtGgtT4850B.10.00044
ORF1ab/nsp13348V348VgtGgtC150B.10.000009
ORF1ab/nsp13348V348VgtGgtA150B.10.000009
ORF1ab/nsp13348V348VgtGgtT4648AY.30.000458
ORF1ab/nsp13348V348VgtGgtA248AY.30.00002
ORF1ab/nsp13348V348MGtgAtg4747All0.000009
ORF1ab/nsp13348V348VgtGgtT4646AY.50.00095
ORF1ab/nsp13348V348LGtgTtg4444P.1.170.007117
ORF1ab/nsp13348V348VgtGgtT4243AY.4.20.000911
ORF1ab/nsp13348V348VgtGgtC143AY.4.20.000022
ORF1ab/nsp13348V348VgtGgtT4343AY.420.00173
ORF1ab/nsp13348V348LGtgTtg4242A.2.50.020958
ORF1ab/nsp13348V348VgtGgtT4040B.1.4290.000941
ORF1ab/nsp13348V348LGtgTtg4040B.1.5591
ORF1ab/nsp13348V348VgtGgtT3939AY.330.002604
ORF1ab/nsp13348V348AgTggCg3838B.1.6230.020386
ORF1ab/nsp13348V348LGtgTtg3737B.1.10.000671
ORF1ab/nsp13348V348LGtgTtg3636AY.330.002404
ORF1ab/nsp13348V348LGtgTtg3636AY.46.40.005922
ORF1ab/nsp13348V348LGtgTtg3434AY.390.00084
ORF1ab/nsp13348V348VgtGgtT3434P.10.000536
ORF1ab/nsp13348V348VgtGgtT3033B.1.10.000544
ORF1ab/nsp13348V348VgtGgtC233B.1.10.000036
ORF1ab/nsp13348V348VgtGgtA133B.1.10.000018
ORF1ab/nsp13348V348MGtgAtg3333B.1.1600.001029
ORF1ab/nsp13348V348VgtGgtT3131AY.9.20.001139
ORF1ab/nsp13348V348LGtgTtg3131P.10.000488
ORF1ab/nsp13348V348VgtGgtT3030B.1.360.004377
ORF1ab/nsp13348V348VgtGgtT2728AY.250.000162
ORF1ab/nsp13348V348VgtGgtC128AY.250.000006
ORF1ab/nsp13348V348LGtgCtg2528AY.910.018262
ORF1ab/nsp13348V348LGtgTtg328AY.910.002191
ORF1ab/nsp13348V348LGtgTtg2727AY.98.10.001308
ORF1ab/nsp13348V348LGtgTtg2626B.1.1.4200.026157
ORF1ab/nsp13348V348VgtGgtT2326P.20.004293
ORF1ab/nsp13348V348VgtGgtC326P.20.00056
ORF1ab/nsp13348V348VgtGgtT2525B.1.5260.000588
ORF1ab/nsp13348V348LGtgTtg2424B.1.1.3770.033149
ORF1ab/nsp13348V348LGtgTtg2424B.1.617.10.003095
ORF1ab/nsp13348V348VgtGgtT2022AY.390.000494
ORF1ab/nsp13348V348VgtGgtA222AY.390.000049
ORF1ab/nsp13348V348LGtgTtg2121AY.200.000816
ORF1ab/nsp13348V348LGtgTtg2121AY.4.50.002257
ORF1ab/nsp13348V348LGtgTtg2121AY.420.000845
ORF1ab/nsp13348V348LGtgTtg2121B.1.6280.0074
ORF1ab/nsp13348V348VgtGgtT2020AY.1020.00053
ORF1ab/nsp13348V348VgtGgtT2020B.1.3690.005705
ORF1ab/nsp13348V348VgtGgtT1919B.1.160.280.055556
ORF1ab/nsp13348V348VgtGgtT1919B.1.3200.023661
ORF1ab/nsp13348V348LGtgTtg1818AY.370.005689
ORF1ab/nsp13348V348LGtgTtg1818AY.99.20.001659
ORF1ab/nsp13348V348LGtgTtg1818B.1.1.5190.000715
ORF1ab/nsp13348V348LGtgTtg1818B.1.4290.000424
ORF1ab/nsp13348V348LGtgTtg1717AY.1200.000632
ORF1ab/nsp13348V348VgtGgtT1717B.1.1600.00053
ORF1ab/nsp13348V348VgtGgtT1717Q.30.002466
ORF1ab/nsp13348V348VgtGgtT1316B.1.1.5190.000516
ORF1ab/nsp13348V348VgtGgtC316B.1.1.5190.000119
ORF1ab/nsp13348V348LGtgTtg1616B.1.5260.000376
ORF1ab/nsp13348V348VgtGgtT1515AY.200.000583
ORF1ab/nsp13348V348LGtgTtg1515AY.4.20.000325
ORF1ab/nsp13348V348VgtGgtT1515B.1.2210.001065
ORF1ab/nsp13348V348LGtgTtg1414AU.30.029536
ORF1ab/nsp13348V348LGtgTtg1414AY.1210.001894
ORF1ab/nsp13348V348AgTggCg1414AY.40.000022
ORF1ab/nsp13348V348LGtgTtg1414AY.470.000435
ORF1ab/nsp13348V348LGtgTtg1414B.1.4270.000707
ORF1ab/nsp13348V348VgtGgtT1313AY.1200.000483
ORF1ab/nsp13348V348VgtGgtT1313AY.60.000535
ORF1ab/nsp13348V348VgtGgtT1212AY.340.001164
ORF1ab/nsp13348V348VgtGgtT1212AY.840.005249
ORF1ab/nsp13348V348LGtgTtg1212AY.90.000811
ORF1ab/nsp13348V348VgtGgtT1212AY.98.10.000581
ORF1ab/nsp13348V348LGtgTtg1212B.1.3510.000357
ORF1ab/nsp13348V348AgTggCg1212B.1.5820.005888
ORF1ab/nsp13348V348LGtgTtg1111AY.4.2.10.001639
ORF1ab/nsp13348V348LGtgTtg1111AY.450.001339
ORF1ab/nsp13348V348LGtgTtg1111AY.740.001272
ORF1ab/nsp13348V348LGtgTtg1111AY.750.000616
ORF1ab/nsp13348V348LGtgTtg1111AY.9.20.000404
ORF1ab/nsp13348V348LGtgTtg1010AY.1170.000845
ORF1ab/nsp13348V348LGtgTtg1010AY.230.000697
ORF1ab/nsp13348V348VgtGgtT1010AY.75.10.001803
ORF1ab/nsp13348V348VgtGgtT1010AY.920.002873
ORF1ab/nsp13348V348LGtgTtg1010B.1.360.001459
ORF1ab/nsp13348V348LGtGCtC910B.1.5250.001018
ORF1ab/nsp13348V348LGtgTtg110B.1.5250.000113
ORF1ab/nsp13348V348LGtgTtg1010C.360.009107
ORF1ab/nsp13348V348VgtGgtT99AY.1000.000414
ORF1ab/nsp13348V348LGtgTtg99AY.1180.000564
ORF1ab/nsp13348V348LGtgTtg99AY.460.000937
ORF1ab/nsp13348V348LGtgTtg99B.1.2430.000626
ORF1ab/nsp13348V348LGtgTtg99B.1.466.20.003521
ORF1ab/nsp13348V348LGtgTtg88AY.1000.000368
ORF1ab/nsp13348V348VgtGgtT88AY.1060.002679
ORF1ab/nsp13348V348LGtgTtg88AY.270.000518
ORF1ab/nsp13348V348VgtGgtT88AY.470.000249
ORF1ab/nsp13348V348LGtgTtg88AY.700.001668
ORF1ab/nsp13348V348LGtgTtg88B.1.1600.00025
ORF1ab/nsp13348V348VgtGgtT88B.1.3510.000238
ORF1ab/nsp13348V348VgtGgtT88B.1.5250.000905
ORF1ab/nsp13348V348LGtgTtg88B.1.6090.003835
ORF1ab/nsp13348V348LGtgTtg67AY.130.000966
ORF1ab/nsp13348V348LGtgCtg17AY.130.000161
ORF1ab/nsp13348V348VgtGgtT77AY.290.00011
ORF1ab/nsp13348V348LGtgTtg77AY.3.10.000597
ORF1ab/nsp13348V348LGtgTtg77AY.300.00277
ORF1ab/nsp13348V348VgtGgtT77AY.46.40.001152
ORF1ab/nsp13348V348LGtgTtg77B.1.177.730.003964
ORF1ab/nsp13348V348VgtGgtT77P.1.140.000335
ORF1ab/nsp13348V348LGtgTtg66AY.1060.002009
ORF1ab/nsp13348V348LGtgTtg66AY.1190.000212
ORF1ab/nsp13348V348VgtGgtT66AY.260.00017
ORF1ab/nsp13348V348VgtGgtT66B.1.1.3180.001811
ORF1ab/nsp13348V348VgtGgtT66B.1.214.20.003597
ORF1ab/nsp13348V348LGtgTtg66B.1.2210.000426
ORF1ab/nsp13348V348VgtGgtT66B.1.2580.000399
ORF1ab/nsp13348V348VgtGgtT66B.1.36.290.003104
ORF1ab/nsp13348V348LGtgTtg66B.1.36.290.003104
ORF1ab/nsp13348V348VgtGgtT66B.1.5770.004124
ORF1ab/nsp13348V348LGtgTtg66B.1.5960.000523
ORF1ab/nsp13348V348VgtGgtT56C.370.00058
ORF1ab/nsp13348V348VgtGgtA16C.370.000116
ORF1ab/nsp13348V348VgtGgtT66P.1.100.001617
ORF1ab/nsp13348V348VgtGgtT55A.10.001409
ORF1ab/nsp13348V348LGtgTtg55A.2.5.30.051546
ORF1ab/nsp13348V348VgtGgtT55AY.1130.000712
ORF1ab/nsp13348V348VgtGgtT55AY.1190.000177
ORF1ab/nsp13348V348VgtGgtT55AY.230.000349
ORF1ab/nsp13348V348LGtgTtg55AY.260.000142
ORF1ab/nsp13348V348LGtgTtg55AY.39.10.000198
ORF1ab/nsp13348V348LGtgTtg55AY.46.60.000361
ORF1ab/nsp13348V348VgtGgtT55AY.640.002976
ORF1ab/nsp13348V348LGtgTtg55AY.840.002187
ORF1ab/nsp13348V348LGtgTtg55AY.850.002136
ORF1ab/nsp13348V348VgtGgtT55AY.880.004421
ORF1ab/nsp13348V348LGtgTtg55AY.9.10.000419
ORF1ab/nsp13348V348VgtGgtT45AY.9.10.000335
ORF1ab/nsp13348V348VgtGgtA15AY.9.10.000084
ORF1ab/nsp13348V348AgTggCg55B.10.000046
ORF1ab/nsp13348V348LGtgTtg55B.1.1.1700.006234
ORF1ab/nsp13348V348LGtgTtg55B.1.1.2220.00102
ORF1ab/nsp13348V348LGtgTtg55B.1.1.2770.003794
ORF1ab/nsp13348V348LGtgTtg55B.1.1.3060.002192
ORF1ab/nsp13348V348VgtGgtT55B.1.110.30.003592
ORF1ab/nsp13348V348VgtGgtC55B.1.2360.010267
ORF1ab/nsp13348V348VgtGgtT55B.1.36.310.008757
ORF1ab/nsp13348V348LGtgTtg55B.1.595.10.02924
ORF1ab/nsp13348V348VgtGgtT55Q.10.000632
ORF1ab/nsp13348V348LGtgTtg55Q.10.000632
ORF1ab/nsp13348V348VgtGgtT55Q.80.000825
ORF1ab/nsp13348V348LGtgTtg44AY.120.10.001284
ORF1ab/nsp13348V348VgtGgtT44AY.3.10.000341
ORF1ab/nsp13348V348VgtGgtT44AY.39.10.000158
ORF1ab/nsp13348V348LGtgTtg44AY.4.40.001637
ORF1ab/nsp13348V348LGtgTtg44AY.5.30.00135
ORF1ab/nsp13348V348VgtGgtT44AY.570.002625
ORF1ab/nsp13348V348LGtgTtg44AY.610.000419
ORF1ab/nsp13348V348VgtGgtT34AY.610.000314
ORF1ab/nsp13348V348VgtGgtA14AY.610.000105
ORF1ab/nsp13348V348LGtgTtg44AY.640.002381
ORF1ab/nsp13348V348LGtgTtg44AY.7.20.002237
ORF1ab/nsp13348V348LGtgTtg44AY.980.000316
ORF1ab/nsp13348V348VgtGgtC44B.1.1.2310.012384
ORF1ab/nsp13348V348VgtGgtT34B.1.1.250.001706
ORF1ab/nsp13348V348VgtGgtA14B.1.1.250.000569
ORF1ab/nsp13348V348LGtgTtg44B.1.1.2840.00043
ORF1ab/nsp13348V348VgtGgtT44B.1.1.3110.001433
ORF1ab/nsp13348V348LGtgTtg44B.1.1.370.000771
ORF1ab/nsp13348V348AgTggCg44B.1.1.70.000004
ORF1ab/nsp13348V348LGtgTtg44B.1.177.320.005398
ORF1ab/nsp13348V348LGtgTtg44B.1.2400.000862
ORF1ab/nsp13348V348VgtGgtT44B.1.3010.023669
ORF1ab/nsp13348V348LGtgTtg44B.1.5090.003463
ORF1ab/nsp13348V348VgtGgtT34B.1.5960.000261
ORF1ab/nsp13348V348VgtGgtA14B.1.5960.000087
ORF1ab/nsp13348V348MGtgAtg44R.10.00036
ORF1ab/nsp13348V348VgtGgtT33AD.20.000657
ORF1ab/nsp13348V348LGtgTtg33AY.1130.000427
ORF1ab/nsp13348V348LGtgTtg33AY.1160.00086
ORF1ab/nsp13348V348VgtGgtT33AY.1160.00086
ORF1ab/nsp13348V348LGtgTtg33AY.120.2.10.001495
ORF1ab/nsp13348V348LGtgTtg33AY.360.000445
ORF1ab/nsp13348V348VgtGgtT33AY.450.000365
ORF1ab/nsp13348V348VgtGgtT33AY.46.60.000217
ORF1ab/nsp13348V348LGtgTtg33AY.480.001395
ORF1ab/nsp13348V348LGtgTtg33AY.510.002727
ORF1ab/nsp13348V348VgtGgtT33AY.520.002443
ORF1ab/nsp13348V348VgtGgtT33AY.690.00056
ORF1ab/nsp13348V348LGtgTtg33AY.710.001425
ORF1ab/nsp13348V348VgtGgtT33AY.730.001996
ORF1ab/nsp13348V348LGtgTtg33AY.75.10.000541
ORF1ab/nsp13348V348LGtgTtg33AY.770.003382
ORF1ab/nsp13348V348LGtgTtg33AY.880.002653
ORF1ab/nsp13348V348LGtgTtg33AY.950.002283
ORF1ab/nsp13348V348LGtgTtg33B0.000383
ORF1ab/nsp13348V348VgtGgtT33B0.000383
ORF1ab/nsp13348V348VgtGgtT33B.1.1.10.00098
ORF1ab/nsp13348V348LGtgTtg33B.1.1.1860.010309
ORF1ab/nsp13348V348LGtgTtg33B.1.1.280.000934
ORF1ab/nsp13348V348VgtGgtT33B.1.1.500.002037
ORF1ab/nsp13348V348VgtGgtT33B.1.1.630.001157
ORF1ab/nsp13348V348LGtgTtg33B.1.1110.003525
ORF1ab/nsp13348V348VgtGgtT33B.1.177.600.000655
ORF1ab/nsp13348V348LGtgTtg33B.1.177.750.003122
ORF1ab/nsp13348V348del1gTgg-g33B.1.177.820.001432
ORF1ab/nsp13348V348VgtGgtT33B.1.3110.000824
ORF1ab/nsp13348V348del1gTgg-g33B.1.3510.000089
ORF1ab/nsp13348V348LGtgTtg33B.1.36.170.001482
ORF1ab/nsp13348V348LGtgCtg23B.1.3690.00057
ORF1ab/nsp13348V348LGtgTtg13B.1.3690.000285
ORF1ab/nsp13348V348VgtGgtT33B.1.3990.005803
ORF1ab/nsp13348V348LGtgTtg33B.1.4970.000944
ORF1ab/nsp13348V348LGtgTtg33B.1.5950.000783
ORF1ab/nsp13348V348LGtgTtg33B.1.5990.010949
ORF1ab/nsp13348V348LGtgTtg33B.1.6370.000219
ORF1ab/nsp13348V348AgTggCg33P.10.000047
ORF1ab/nsp13348V348LGtgTtg33P.1.140.000143
ORF1ab/nsp13348V348LGtgTtg33P.1.70.000958
ORF1ab/nsp13348V348LGtgTtg33P.20.00056
ORF1ab/nsp13348V348LGtgTtg22A.10.000564
ORF1ab/nsp13348V348LGtgTtg22AD.20.000438
ORF1ab/nsp13348V348GgTggGg22All0
ORF1ab/nsp13348V348delGTG---22All0
ORF1ab/nsp13348V348VgtGgtT22AY.1050.001286
ORF1ab/nsp13348V348LGtgTtg22AY.1110.000366
ORF1ab/nsp13348V348LGtgTtg22AY.116.10.000623
ORF1ab/nsp13348V348VgtGgtT22AY.116.10.000623
ORF1ab/nsp13348V348VgtGgtT22AY.1170.000169
ORF1ab/nsp13348V348LGtgTtg22AY.120.000632
ORF1ab/nsp13348V348VgtGgtT22AY.1210.000271
ORF1ab/nsp13348V348LGtgTtg22AY.140.000176
ORF1ab/nsp13348V348LGtgTtg22AY.240.000862
ORF1ab/nsp13348V348AgTggCg22AY.30.00002
ORF1ab/nsp13348V348MGtgAtg22AY.390.000049
ORF1ab/nsp13348V348AgTggCg22AY.390.000049
ORF1ab/nsp13348V348LGtgTtg22AY.46.20.001271
ORF1ab/nsp13348V348del1gTgg-g22AY.520.001629
ORF1ab/nsp13348V348LGtgTtg22AY.580.001815
ORF1ab/nsp13348V348VgtGgtT22AY.600.001876
ORF1ab/nsp13348V348VgtGgtT22AY.740.000231
ORF1ab/nsp13348V348VgtGgtT22AY.790.002421
ORF1ab/nsp13348V348LGtgTtg22AY.870.001665
ORF1ab/nsp13348V348VgtGgtT22AY.90.000135
ORF1ab/nsp13348V348LGtgTtg22AY.920.000575
ORF1ab/nsp13348V348VgtGgtT22AY.950.001522
ORF1ab/nsp13348V348LGtgTtg22AY.99.10.003106
ORF1ab/nsp13348V348VgtGgtT22B.1.1.1280.014184
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2010.04878
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2160.001781
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2200.003717
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2430.008163
ORF1ab/nsp13348V348VgtGgtT22B.1.1.280.000622
ORF1ab/nsp13348V348VgtGgtT22B.1.1.2840.000215
ORF1ab/nsp13348V348VgtGgtT22B.1.1.3220.017544
ORF1ab/nsp13348V348VgtGgtT22B.1.1.390.001019
ORF1ab/nsp13348V348VgtGgtT22B.1.1.4160.00181
ORF1ab/nsp13348V348LGtgTtg22B.1.1.4320.002532
ORF1ab/nsp13348V348VgtGgtT22B.1.1.4480.004065
ORF1ab/nsp13348V348LGtgTtg22B.1.1.5210.010695
ORF1ab/nsp13348V348VgtGgtT22B.1.1.700.000682
ORF1ab/nsp13348V348VgtGgtT22B.1.1260.002551
ORF1ab/nsp13348V348VgtGgtT22B.1.1390.001466
ORF1ab/nsp13348V348del1gTgg-g22B.1.1600.000062
ORF1ab/nsp13348V348LGtgTtg22B.1.160.200.017857
ORF1ab/nsp13348V348AgTggCg22B.1.1770.000026
ORF1ab/nsp13348V348VgtGgtT22B.1.177.330.003289
ORF1ab/nsp13348V348LGtgTtg22B.1.177.440.001038
ORF1ab/nsp13348V348VgtGgtT22B.1.177.520.003515
ORF1ab/nsp13348V348VgtGgtT12B.1.177.730.000566
ORF1ab/nsp13348V348VgtGgtA12B.1.177.730.000566
ORF1ab/nsp13348V348VgtGgtT22B.1.177.760.004988
ORF1ab/nsp13348V348VgtGgtT22B.1.177.770.001452
ORF1ab/nsp13348V348LGtgTtg22B.1.177.810.000379
ORF1ab/nsp13348V348LGtgTtg22B.1.177.850.01087
ORF1ab/nsp13348V348LGtgTtg22B.1.177.860.000367
ORF1ab/nsp13348V348LGtgTtg22B.1.2220.003384
ORF1ab/nsp13348V348VgtGgtT22B.1.2340.000264
ORF1ab/nsp13348V348LGtgTtg22B.1.2390.002442
ORF1ab/nsp13348V348LGtgTtg22B.1.258.160.003273
ORF1ab/nsp13348V348LGtgTtg22B.1.351.50.001199
ORF1ab/nsp13348V348LGtgTtg22B.1.36.90.006431
ORF1ab/nsp13348V348LGtgTtg22B.1.3960.001411
ORF1ab/nsp13348V348LGtgTtg22B.1.4160.002538
ORF1ab/nsp13348V348AgTggCg22B.1.5740.004301
ORF1ab/nsp13348V348LGtgTtg22B.1.5790.022472
ORF1ab/nsp13348V348LGtgTtg22B.1.5820.000981
ORF1ab/nsp13348V348VgtGgtT22B.1.6090.000959
ORF1ab/nsp13348V348MGtgAtg22B.1.617.20.000008
ORF1ab/nsp13348V348VgtGgtT22B.1.6210.000177
ORF1ab/nsp13348V348VgtGgtT22B.1.6370.000146
ORF1ab/nsp13348V348VgtGgtT22B.60.00182
ORF1ab/nsp13348V348VgtGgtT22C.360.001821
ORF1ab/nsp13348V348AgTggCg22C.36.30.001134
ORF1ab/nsp13348V348LGtgTtg22C.370.000232
ORF1ab/nsp13348V348LGtgTtg22D.20.00015
ORF1ab/nsp13348V348VgtGgtC12P.1.120.000484
ORF1ab/nsp13348V348VgtGgtT12P.1.120.000484
ORF1ab/nsp13348V348LGtgTtg22P.1.150.000465
ORF1ab/nsp13348V348VgtGgtT22P.70.008734
ORF1ab/nsp13348V348VgtGgtT11A0.000387
ORF1ab/nsp13348V348VgtGgtT11A.2.40.003367
ORF1ab/nsp13348V348VgtGgtT11A.230.010526
ORF1ab/nsp13348V348LGtgTtg11A.270.001656
ORF1ab/nsp13348V348LGtgTtg11AE.10.011364
ORF1ab/nsp13348V348TGTgACg11All0
ORF1ab/nsp13348V348VgtGgtT11AP.10.001502
ORF1ab/nsp13348V348VgtGgtT11AY.100.00053
ORF1ab/nsp13348V348VgtGgtT11AY.1080.001103
ORF1ab/nsp13348V348LGtgTtg11AY.1090.00074
ORF1ab/nsp13348V348VgtGgtT11AY.1090.00074
ORF1ab/nsp13348V348VgtGgtT11AY.110.001339
ORF1ab/nsp13348V348VgtGgtT11AY.1110.000183
ORF1ab/nsp13348V348VgtGgtT11AY.1180.000063
ORF1ab/nsp13348V348GgTggGg11AY.1180.000063
ORF1ab/nsp13348V348VgtGgtT11AY.120.000316
ORF1ab/nsp13348V348VgtGgtT11AY.160.00038
ORF1ab/nsp13348V348VgtGgtT11AY.190.00114
ORF1ab/nsp13348V348LGtgTtg11AY.210.001898
ORF1ab/nsp13348V348LGtgTtg11AY.220.002092
ORF1ab/nsp13348V348LGtgTtg11AY.23.10.000417
ORF1ab/nsp13348V348VgtGgtT11AY.240.000431
ORF1ab/nsp13348V348LGtgTtg11AY.29.10.000221
ORF1ab/nsp13348V348LGtgTtg11AY.320.000532
ORF1ab/nsp13348V348LGtgTtg11AY.340.000097
ORF1ab/nsp13348V348VgtGgtT11AY.34.10.00051
ORF1ab/nsp13348V348VgtGgtT11AY.350.000233
ORF1ab/nsp13348V348VgtGgtT11AY.370.000316
ORF1ab/nsp13348V348VgtGgtT11AY.380.000499
ORF1ab/nsp13348V348LGtgTtg11AY.4.10.000737
ORF1ab/nsp13348V348VgtGgtT11AY.4.50.000107
ORF1ab/nsp13348V348LGtgTtg11AY.410.000294
ORF1ab/nsp13348V348AgTggCg11AY.450.000122
ORF1ab/nsp13348V348VgtGgtA11AY.46.20.000635
ORF1ab/nsp13348V348VgtGgtT11AY.46.50.000198
ORF1ab/nsp13348V348MGtgAtg11AY.470.000031
ORF1ab/nsp13348V348VgtGgtT11AY.480.000465
ORF1ab/nsp13348V348LGtgTtg11AY.490.003195
ORF1ab/nsp13348V348AgTggCg11AY.50.000021
ORF1ab/nsp13348V348VgtGgtT11AY.5.20.002463
ORF1ab/nsp13348V348VgtGgtT11AY.5.40.000277
ORF1ab/nsp13348V348LGtgTtg11AY.530.000288
ORF1ab/nsp13348V348LGtgTtg11AY.550.000917
ORF1ab/nsp13348V348VgtGgtT11AY.620.000436
ORF1ab/nsp13348V348LGtgTtg11AY.650.000533
ORF1ab/nsp13348V348LGtgTtg11AY.680.000274
ORF1ab/nsp13348V348MGtgAtg11AY.680.000274
ORF1ab/nsp13348V348VgtGgtT11AY.680.000274
ORF1ab/nsp13348V348LGtgTtg11AY.690.000187
ORF1ab/nsp13348V348VgtGgtT11AY.7.10.000113
ORF1ab/nsp13348V348LGtgTtg11AY.7.10.000113
ORF1ab/nsp13348V348VgtGgtT11AY.710.000475
ORF1ab/nsp13348V348LGtgTtg11AY.720.001361
ORF1ab/nsp13348V348VgtGgtT11AY.720.001361
ORF1ab/nsp13348V348LGtgTtg11AY.730.000665
ORF1ab/nsp13348V348LGtgTtg11AY.780.001541
ORF1ab/nsp13348V348LGtgTtg11AY.80.000606
ORF1ab/nsp13348V348VgtGgtT11AY.870.000833
ORF1ab/nsp13348V348LGtgTtg11AY.900.000684
ORF1ab/nsp13348V348VgtGgtT11AY.930.000273
ORF1ab/nsp13348V348LGtgTtg11AY.940.000443
ORF1ab/nsp13348V348LGtgTtg11AY.960.002075
ORF1ab/nsp13348V348LGtgTtg11AY.990.001049
ORF1ab/nsp13348V348VgtGgtT11AZ.10.000867
ORF1ab/nsp13348V348VgtGgtT11AZ.50.003509
ORF1ab/nsp13348V348GgTggGg11B0.000128
ORF1ab/nsp13348V348MGtgAtg11B.10.000009
ORF1ab/nsp13348V348AgTggCg11B.1.10.000018
ORF1ab/nsp13348V348LGtgTtg11B.1.1.1130.006993
ORF1ab/nsp13348V348LGtgTtg11B.1.1.1170.009709
ORF1ab/nsp13348V348VgtGgtA11B.1.1.1590.004673
ORF1ab/nsp13348V348LGtgTtg11B.1.1.1870.00885
ORF1ab/nsp13348V348LGtgTtg11B.1.1.2140.000055
ORF1ab/nsp13348V348VgtGgtT11B.1.1.2170.003636
ORF1ab/nsp13348V348VgtGgtA11B.1.1.2220.000204
ORF1ab/nsp13348V348LGtgTtg11B.1.1.30.008696
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3060.000438
ORF1ab/nsp13348V348LGtgTtg11B.1.1.3110.000358
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3260.001761
ORF1ab/nsp13348V348VgtGgtT11B.1.1.330.000421
ORF1ab/nsp13348V348LGtgTtg11B.1.1.330.000421
ORF1ab/nsp13348V348LGtgTtg11B.1.1.3540.004386
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3690.000446
ORF1ab/nsp13348V348VgtGgtT11B.1.1.370.000193
ORF1ab/nsp13348V348VgtGgtT11B.1.1.3880.045455
ORF1ab/nsp13348V348LGtgTtg11B.1.1.4250.045455
ORF1ab/nsp13348V348LGtgTtg11B.1.1.4290.004608
ORF1ab/nsp13348V348LGtgTtg11B.1.1.440.00241
ORF1ab/nsp13348V348VgtGgtT11B.1.1.440.00241
ORF1ab/nsp13348V348AgTggCg11B.1.1.450.014085
ORF1ab/nsp13348V348LGtgTtg11B.1.1.500.000679
ORF1ab/nsp13348V348VgtGgtT11B.1.1.510.001718
ORF1ab/nsp13348V348LGtgTtg11B.1.1.510.001718
ORF1ab/nsp13348V348LGtgTtg11B.1.1.5230.001563
ORF1ab/nsp13348V348LGtgTtg11B.1.1.5260.003546
ORF1ab/nsp13348V348VgtGgtT11B.1.1.80.003584
ORF1ab/nsp13348V348LGtgTtg11B.1.110.30.000718
ORF1ab/nsp13348V348LGtgTtg11B.1.1150.021739
ORF1ab/nsp13348V348LGtgTtg11B.1.1260.001276
ORF1ab/nsp13348V348LGtgTtg11B.1.160.150.00495
ORF1ab/nsp13348V348LGtgTtg11B.1.160.160.000929
ORF1ab/nsp13348V348LGtgTtg11B.1.177.110.001698
ORF1ab/nsp13348V348VgtGgtT11B.1.177.120.000152
ORF1ab/nsp13348V348VgtGgtT11B.1.177.140.006098
ORF1ab/nsp13348V348LGtgTtg11B.1.177.170.000821
ORF1ab/nsp13348V348AgTggCg11B.1.177.350.000691
ORF1ab/nsp13348V348VgtGgtT11B.1.177.40.000211
ORF1ab/nsp13348V348LGtgTtg11B.1.177.450.000381
ORF1ab/nsp13348V348VgtGgtT11B.1.177.570.000281
ORF1ab/nsp13348V348LGtgTtg11B.1.177.580.001332
ORF1ab/nsp13348V348VgtGgtT11B.1.177.580.001332
ORF1ab/nsp13348V348VgtGgtC11B.1.177.60.000977
ORF1ab/nsp13348V348del1gTgg-g11B.1.177.60.000977
ORF1ab/nsp13348V348LGtgTtg11B.1.177.650.000665
ORF1ab/nsp13348V348LGtgTtg11B.1.177.70.000165
ORF1ab/nsp13348V348VgtGgtT11B.1.177.750.001041
ORF1ab/nsp13348V348LGtgTtg11B.1.177.790.002342
ORF1ab/nsp13348V348AgTggCg11B.1.177.830.001481
ORF1ab/nsp13348V348VgtGgtT11B.1.177.860.000183
ORF1ab/nsp13348V348LGtgTtg11B.1.1790.003759
ORF1ab/nsp13348V348LGtgTtg11B.1.1920.009259
ORF1ab/nsp13348V348LGtgTtg11B.1.1990.004132
ORF1ab/nsp13348V348AgTggCg11B.1.20.000009
ORF1ab/nsp13348V348MGtgAtg11B.1.20.000009
ORF1ab/nsp13348V348LGtgTtg11B.1.214.20.0006
ORF1ab/nsp13348V348VgtGgtT11B.1.220.001318
ORF1ab/nsp13348V348LGtgTtg11B.1.220.001318
ORF1ab/nsp13348V348VgtGgtT11B.1.2320.000537
ORF1ab/nsp13348V348LGtgTtg11B.1.2340.000132
ORF1ab/nsp13348V348LGtgTtg11B.1.2350.002519
ORF1ab/nsp13348V348LGtgTtg11B.1.2360.002053
ORF1ab/nsp13348V348VgtGgtT11B.1.2400.000216
ORF1ab/nsp13348V348AgTggCg11B.1.2430.00007
ORF1ab/nsp13348V348VgtGgtT11B.1.243.10.022222
ORF1ab/nsp13348V348VgtGgtT11B.1.2470.014925
ORF1ab/nsp13348V348LGtgTtg11B.1.2580.000067
ORF1ab/nsp13348V348LGtgTtg11B.1.3010.005917
ORF1ab/nsp13348V348LGtGCtC11B.1.3110.000275
ORF1ab/nsp13348V348LGtgTtg11B.1.3330.010526
ORF1ab/nsp13348V348LGtgTtg11B.1.3360.002439
ORF1ab/nsp13348V348MGtgAtg11B.1.3510.00003
ORF1ab/nsp13348V348VgtGgtT11B.1.351.30.000876
ORF1ab/nsp13348V348LGtgTtg11B.1.351.30.000876
ORF1ab/nsp13348V348VgtGgtT11B.1.351.50.0006
ORF1ab/nsp13348V348del1gTgg-g11B.1.36.10.00114
ORF1ab/nsp13348V348LGtgCtg11B.1.36.360.000602
ORF1ab/nsp13348V348LGtgTtg11B.1.36.80.001
ORF1ab/nsp13348V348VgtGgtT11B.1.3660.004878
ORF1ab/nsp13348V348VgtGgtT11B.1.3670.000792
ORF1ab/nsp13348V348LGtgTtg11B.1.3670.000792
ORF1ab/nsp13348V348VgtGgtT11B.1.3890.001002
ORF1ab/nsp13348V348LGtgTtg11B.1.3980.002976
ORF1ab/nsp13348V348LGtgTtg11B.1.4000.000429
ORF1ab/nsp13348V348LGtgTtg11B.1.416.10.001563
ORF1ab/nsp13348V348AgTggCg11B.1.4170.028571
ORF1ab/nsp13348V348AgTggCg11B.1.4270.00005
ORF1ab/nsp13348V348LGtgTtg11B.1.4360.001029
ORF1ab/nsp13348V348VgtGgtT11B.1.4360.001029
ORF1ab/nsp13348V348VgtGgtT11B.1.438.10.000107
ORF1ab/nsp13348V348LGtgTtg11B.1.438.10.000107
ORF1ab/nsp13348V348VgtGgtT11B.1.4410.009615
ORF1ab/nsp13348V348LGtgTtg11B.1.4460.02
ORF1ab/nsp13348V348VgtGgtT11B.1.4620.007246
ORF1ab/nsp13348V348LGtgTtg11B.1.4740.001901
ORF1ab/nsp13348V348LGtgTtg11B.1.4800.002488
ORF1ab/nsp13348V348VgtGgtT11B.1.4970.000315
ORF1ab/nsp13348V348LGtgTtg11B.1.4990.00105
ORF1ab/nsp13348V348VgtGgtT11B.1.5170.000427
ORF1ab/nsp13348V348LGtgTtg11B.1.5210.004975
ORF1ab/nsp13348V348AgTggCg11B.1.5260.000024
ORF1ab/nsp13348V348LGtgTtg11B.1.5320.006211
ORF1ab/nsp13348V348VgtGgtT11B.1.5420.03125
ORF1ab/nsp13348V348VgtGgtT11B.1.5560.007519
ORF1ab/nsp13348V348LGtgTtg11B.1.5600.00463
ORF1ab/nsp13348V348del1Gtg-tg11B.1.5640.000426
ORF1ab/nsp13348V348LGtgTtg11B.1.564.10.001577
ORF1ab/nsp13348V348VgtGgtT11B.1.5730.006098
ORF1ab/nsp13348V348LGtgTtg11B.1.5760.000907
ORF1ab/nsp13348V348MGtgAtg11B.1.5760.000907
ORF1ab/nsp13348V348LGtgTtg11B.1.5770.000687
ORF1ab/nsp13348V348VgtGgtT11B.1.5820.000491
ORF1ab/nsp13348V348VgtGgtA11B.1.5950.000261
ORF1ab/nsp13348V348AgTggCg11B.1.5960.000087
ORF1ab/nsp13348V348VgtGgtT11B.1.6040.017241
ORF1ab/nsp13348V348LGtgTtg11B.1.6120.002653
ORF1ab/nsp13348V348VgtGgtT11B.1.617.10.000129
ORF1ab/nsp13348V348TGTgACg11B.1.617.20.000004
ORF1ab/nsp13348V348LGtgTtg11B.1.6190.000871
ORF1ab/nsp13348V348LGtgTtg11B.1.621.10.000506
ORF1ab/nsp13348V348VgtGgtT11B.1.6230.000536
ORF1ab/nsp13348V348LGtgTtg11B.1.6250.002353
ORF1ab/nsp13348V348LGtGCtC11B.1.6360.006711
ORF1ab/nsp13348V348LGtgTtg11B.1.80.001972
ORF1ab/nsp13348V348delGTG---11B.340.013699
ORF1ab/nsp13348V348LGtgTtg11B.400.000364
ORF1ab/nsp13348V348VgtGgtA11C.160.00106
ORF1ab/nsp13348V348LGtgTtg11C.2.10.006667
ORF1ab/nsp13348V348VgtGgtT11C.36.30.000567
ORF1ab/nsp13348V348VgtGgtT11C.37.10.002618
ORF1ab/nsp13348V348VgtGgtC11D.20.000075
ORF1ab/nsp13348V348VgtGgtT11N.50.001767
ORF1ab/nsp13348V348LGtgTtg11N.80.03125
ORF1ab/nsp13348V348delGTG---11P.10.000016
ORF1ab/nsp13348V348LGtgTtg11P.1.10.000318
ORF1ab/nsp13348V348VgtGgtT11P.1.10.000318
ORF1ab/nsp13348V348LGtgTtg11P.1.110.010204
ORF1ab/nsp13348V348LGtgTtg11P.1.120.000484
ORF1ab/nsp13348V348VgtGgtT11P.1.130.000898
ORF1ab/nsp13348V348VgtGgtT11P.1.150.000232
ORF1ab/nsp13348V348LGtgTtg11P.1.20.001156
ORF1ab/nsp13348V348LGtgTtg11Q.30.000145
ORF1ab/nsp13348V348LGtgTtg11Q.80.000165
ORF1ab/nsp13348V348del1gTgg-g11R.10.00009
ORF1ab/nsp13348V348VgtGgtC11R.10.00009