CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 337 | R337R | R5661R | syn | cgT | cgC | 2857 | 2669 | 0.934197 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337R | R5661R | syn | cgT | cgA | 2857 | 101 | 0.0353518 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337R | R5661R | syn | cgT | cgG | 2857 | 87 | 0.0304515 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337C | R5661C | nonsyn | Cgt | Tgt | 147 | 147 | 1 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337H | R5661H | nonsyn | cGt | cAt | 36 | 36 | 1 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337L | R5661L | nonsyn | cGt | cTt | 33 | 32 | 0.969697 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337L | R5661L | nonsyn | cGT | cTG | 33 | 1 | 0.030303 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337S | R5661S | nonsyn | Cgt | Agt | 9 | 9 | 1 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337del | R5661del | del | CGT | --- | 9 | 9 | 1 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337P | R5661P | nonsyn | cGT | cCA | 2 | 1 | 0.5 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337P | R5661P | nonsyn | cGt | cCt | 2 | 1 | 0.5 | 17245-17247 |
ORF1ab/nsp13 | 337 | R337N | R5661N | nonsyn | CGt | AAt | 1 | 1 | 1 | 17245-17247 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2669 | 2857 | All | 0.00051 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 101 | 2857 | All | 0.000019 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 87 | 2857 | All | 0.000017 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1509 | 1516 | B | 0.192868 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 7 | 1516 | B | 0.000895 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 423 | 423 | B.39 | 0.986014 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 147 | 147 | All | 0.000028 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 125 | 125 | B.35 | 0.976562 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 86 | 120 | B.1.1.7 | 0.000077 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 32 | 120 | B.1.1.7 | 0.000029 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 2 | 120 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 98 | 98 | B.58 | 1 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 72 | 72 | B.34 | 0.986301 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 53 | 59 | AY.4 | 0.000082 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 5 | 59 | AY.4 | 0.000008 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 1 | 59 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 47 | 47 | B.33 | 1 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 41 | 43 | AY.25 | 0.000247 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 43 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 42 | 42 | B.38 | 1 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 40 | 40 | AY.53 | 0.011501 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 37 | 37 | B.32 | 1 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 36 | 36 | All | 0.000007 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 32 | 33 | All | 0.000006 |
ORF1ab/nsp13 | 337 | R337L | cGT | cTG | 1 | 33 | All | 0 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 30 | 30 | B.37 | 0.857143 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 22 | 22 | AY.110 | 0.002479 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 16 | 17 | B.1.2 | 0.000141 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 17 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 15 | 16 | B.1 | 0.000137 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 1 | 16 | B.1 | 0.000009 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 11 | 15 | B.1.617.2 | 0.000041 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 3 | 15 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 15 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 10 | 10 | B.36 | 0.769231 |
ORF1ab/nsp13 | 337 | R337del | CGT | --- | 9 | 9 | All | 0.000002 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 9 | 9 | All | 0.000002 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 7 | 9 | AY.3 | 0.00007 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 2 | 9 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 6 | 7 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 7 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 4 | 6 | AY.103 | 0.000025 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 6 | AY.103 | 0.000012 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 5 | 5 | A | 0.001935 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 3 | 3 | AE.8 | 0.001467 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 337 | R337L | cGT | cTG | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 2 | 3 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 3 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 337 | R337del | CGT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 337 | R337P | cGT | cCA | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 337 | R337P | cGt | cCt | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 337 | R337del | CGT | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | A.22 | 0.066667 |
ORF1ab/nsp13 | 337 | R337N | CGt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 337 | R337del | CGT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 337 | R337N | CGt | AAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 337 | R337P | cGT | cCA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.1.136 | 0.021277 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 337 | R337P | cGt | cCt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 337 | R337S | Cgt | Agt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 337 | R337del | CGT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | B.47 | 0.020408 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp13 | 337 | R337del | CGT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 337 | R337L | cGt | cTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 337 | R337del | CGT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 337 | R337C | Cgt | Tgt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 337 | R337R | cgT | cgA | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 337 | R337H | cGt | cAt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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