CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 336

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13336A336TA5660TnonsynGcaAca519519117242-17244
ORF1ab/nsp13336A336AA5660AsyngcAgcG4254200.98823517242-17244
ORF1ab/nsp13336A336AA5660AsyngcAgcC42530.0070588217242-17244
ORF1ab/nsp13336A336AA5660AsyngcAgcT42520.0047058817242-17244
ORF1ab/nsp13336A336VA5660VnonsyngCagTa313313117242-17244
ORF1ab/nsp13336A336SA5660SnonsynGcaTca4242117242-17244
ORF1ab/nsp13336A336del2A5660del2delgCAg--650.83333317242-17244
ORF1ab/nsp13336A336del2A5660del2delGCAC--610.16666717242-17244
ORF1ab/nsp13336A336delA5660deldelGCA---33117242-17244
ORF1ab/nsp13336A336PA5660PnonsynGcaCca22117242-17244
ORF1ab/nsp13336A336del1A5660del1delGca-ca210.517242-17244
ORF1ab/nsp13336A336LA5660LnonsynGCaTTa210.517242-17244
ORF1ab/nsp13336A336LA5660LnonsynGCaCTa210.517242-17244
ORF1ab/nsp13336A336del1A5660del1delgcAgc-210.517242-17244
ORF1ab/nsp13336A336QA5660QnonsynGCaCAa11117242-17244
ORF1ab/nsp13336A336GA5660GnonsyngCagGa11117242-17244
ORF1ab/nsp13336A336EA5660EnonsyngCagAa11117242-17244

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13336A336TGcaAca519519All0.000099
ORF1ab/nsp13336A336AgcAgcG420425All0.00008
ORF1ab/nsp13336A336AgcAgcC3425All0.000001
ORF1ab/nsp13336A336AgcAgcT2425All0
ORF1ab/nsp13336A336VgCagTa313313All0.00006
ORF1ab/nsp13336A336TGcaAca220220AY.40.000342
ORF1ab/nsp13336A336AgcAgcG205205AY.1060.068654
ORF1ab/nsp13336A336VgCagTa102102AY.40.000159
ORF1ab/nsp13336A336AgcAgcG8787B.1.1.3020.180498
ORF1ab/nsp13336A336VgCagTa4646B.1.20.000405
ORF1ab/nsp13336A336SGcaTca4242All0.000008
ORF1ab/nsp13336A336TGcaAca4040AY.440.000243
ORF1ab/nsp13336A336AgcAgcG3636B.1.1.70.000032
ORF1ab/nsp13336A336TGcaAca2727AY.250.000162
ORF1ab/nsp13336A336TGcaAca2727B.1.617.20.000102
ORF1ab/nsp13336A336AgcAgcG2424AY.430.000106
ORF1ab/nsp13336A336TGcaAca2222B.1.1.70.00002
ORF1ab/nsp13336A336VgCagTa2222B.1.1770.00029
ORF1ab/nsp13336A336VgCagTa2121B.1.1.70.000019
ORF1ab/nsp13336A336VgCagTa2121B.1.617.20.000079
ORF1ab/nsp13336A336VgCagTa1616AY.30.000159
ORF1ab/nsp13336A336AgcAgcG1516B.1.617.20.000056
ORF1ab/nsp13336A336AgcAgcT116B.1.617.20.000004
ORF1ab/nsp13336A336TGcaAca1414B.1.2430.000974
ORF1ab/nsp13336A336TGcaAca1313B.1.1.3170.005352
ORF1ab/nsp13336A336TGcaAca1313B.1.20.000114
ORF1ab/nsp13336A336AgcAgcG1111AY.1030.000068
ORF1ab/nsp13336A336TGcaAca1111AY.200.000428
ORF1ab/nsp13336A336TGcaAca1111AY.340.001067
ORF1ab/nsp13336A336VgCagTa1010AY.250.00006
ORF1ab/nsp13336A336TGcaAca1010B.10.000092
ORF1ab/nsp13336A336VgCagTa99AY.200.00035
ORF1ab/nsp13336A336VgCagTa99B.1.36.270.00687
ORF1ab/nsp13336A336SGcaTca88AY.1140.001849
ORF1ab/nsp13336A336TGcaAca88AY.1200.000297
ORF1ab/nsp13336A336SGcaTca88B.1.1.4810.571429
ORF1ab/nsp13336A336TGcaAca77AD.20.001533
ORF1ab/nsp13336A336TGcaAca77AY.1030.000043
ORF1ab/nsp13336A336SGcaTca77AY.250.000042
ORF1ab/nsp13336A336TGcaAca77AY.30.00007
ORF1ab/nsp13336A336del2gCAg--56All0.000001
ORF1ab/nsp13336A336del2GCAC--16All0
ORF1ab/nsp13336A336TGcaAca66AY.260.00017
ORF1ab/nsp13336A336TGcaAca66P.10.000095
ORF1ab/nsp13336A336AgcAgcG55AY.340.000485
ORF1ab/nsp13336A336SGcaTca55AY.40.000008
ORF1ab/nsp13336A336VgCagTa55B.10.000046
ORF1ab/nsp13336A336SGcaTca44AY.1020.000106
ORF1ab/nsp13336A336TGcaAca44AY.130.000644
ORF1ab/nsp13336A336AgcAgcG44AY.40.000006
ORF1ab/nsp13336A336TGcaAca44AY.50.000083
ORF1ab/nsp13336A336AgcAgcG34B.10.000027
ORF1ab/nsp13336A336AgcAgcC14B.10.000009
ORF1ab/nsp13336A336AgcAgcG44B.1.10.000073
ORF1ab/nsp13336A336VgCagTa44B.1.415.10.030303
ORF1ab/nsp13336A336delGCA---33All0.000001
ORF1ab/nsp13336A336AgcAgcG33AY.1170.000254
ORF1ab/nsp13336A336VgCagTa33AY.230.000209
ORF1ab/nsp13336A336TGcaAca33AY.290.000047
ORF1ab/nsp13336A336TGcaAca33AY.330.0002
ORF1ab/nsp13336A336VgCagTa33AY.4.2.10.000447
ORF1ab/nsp13336A336VgCagTa33AY.430.000013
ORF1ab/nsp13336A336VgCagTa33AY.470.000093
ORF1ab/nsp13336A336TGcaAca33B.1.1.2410.006211
ORF1ab/nsp13336A336AgcAgcG33B.1.177.40.000633
ORF1ab/nsp13336A336TGcaAca33B.1.3670.002377
ORF1ab/nsp13336A336TGcaAca33B.1.4290.000071
ORF1ab/nsp13336A336VgCagTa33C.360.002732
ORF1ab/nsp13336A336AgcAgcG33P.10.000047
ORF1ab/nsp13336A336PGcaCca22All0
ORF1ab/nsp13336A336del1gcAgc-12All0
ORF1ab/nsp13336A336del1Gca-ca12All0
ORF1ab/nsp13336A336LGCaCTa12All0
ORF1ab/nsp13336A336LGCaTTa12All0
ORF1ab/nsp13336A336TGcaAca22AY.1020.000053
ORF1ab/nsp13336A336TGcaAca22AY.1130.000285
ORF1ab/nsp13336A336TGcaAca22AY.1190.000071
ORF1ab/nsp13336A336AgcAgcG12AY.250.000006
ORF1ab/nsp13336A336AgcAgcC12AY.250.000006
ORF1ab/nsp13336A336VgCagTa22AY.290.000032
ORF1ab/nsp13336A336TGcaAca22AY.4.20.000043
ORF1ab/nsp13336A336AgcAgcG22AY.4.20.000043
ORF1ab/nsp13336A336TGcaAca22AY.420.00008
ORF1ab/nsp13336A336VgCagTa22AY.440.000012
ORF1ab/nsp13336A336TGcaAca22AY.46.40.000329
ORF1ab/nsp13336A336AgcAgcG22AY.540.000191
ORF1ab/nsp13336A336TGcaAca22AY.7.10.000225
ORF1ab/nsp13336A336TGcaAca22AY.99.20.000184
ORF1ab/nsp13336A336SGcaTca22B.1.20.000018
ORF1ab/nsp13336A336AgcAgcC12B.1.2580.000067
ORF1ab/nsp13336A336AgcAgcT12B.1.2580.000067
ORF1ab/nsp13336A336VgCagTa22B.1.360.000292
ORF1ab/nsp13336A336VgCagTa22B.1.4290.000047
ORF1ab/nsp13336A336VgCagTa22B.1.5260.000047
ORF1ab/nsp13336A336del2gCAg--22B.1.617.20.000008
ORF1ab/nsp13336A336SGcaTca22P.10.000032
ORF1ab/nsp13336A336GgCagGa110.055556
ORF1ab/nsp13336A336GgCagGa11All0
ORF1ab/nsp13336A336EgCagAa11All0
ORF1ab/nsp13336A336QGCaCAa11All0
ORF1ab/nsp13336A336VgCagTa11AY.1000.000046
ORF1ab/nsp13336A336TGcaAca11AY.1000.000046
ORF1ab/nsp13336A336EgCagAa11AY.1020.000027
ORF1ab/nsp13336A336SGcaTca11AY.1030.000006
ORF1ab/nsp13336A336LGCaCTa11AY.1030.000006
ORF1ab/nsp13336A336VgCagTa11AY.1030.000006
ORF1ab/nsp13336A336AgcAgcG11AY.1100.000113
ORF1ab/nsp13336A336TGcaAca11AY.1110.000183
ORF1ab/nsp13336A336SGcaTca11AY.1130.000142
ORF1ab/nsp13336A336VgCagTa11AY.1170.000085
ORF1ab/nsp13336A336SGcaTca11AY.1190.000035
ORF1ab/nsp13336A336TGcaAca11AY.230.00007
ORF1ab/nsp13336A336TGcaAca11AY.270.000065
ORF1ab/nsp13336A336TGcaAca11AY.3.10.000085
ORF1ab/nsp13336A336TGcaAca11AY.300.000396
ORF1ab/nsp13336A336TGcaAca11AY.350.000233
ORF1ab/nsp13336A336TGcaAca11AY.360.000148
ORF1ab/nsp13336A336AgcAgcG11AY.360.000148
ORF1ab/nsp13336A336TGcaAca11AY.390.000025
ORF1ab/nsp13336A336VgCagTa11AY.390.000025
ORF1ab/nsp13336A336VgCagTa11AY.4.20.000022
ORF1ab/nsp13336A336TGcaAca11AY.4.2.10.000149
ORF1ab/nsp13336A336VgCagTa11AY.420.00004
ORF1ab/nsp13336A336LGCaTTa11AY.440.000006
ORF1ab/nsp13336A336AgcAgcG11AY.440.000006
ORF1ab/nsp13336A336TGcaAca11AY.460.000104
ORF1ab/nsp13336A336VgCagTa11AY.480.000465
ORF1ab/nsp13336A336VgCagTa11AY.50.000021
ORF1ab/nsp13336A336VgCagTa11AY.60.000041
ORF1ab/nsp13336A336TGcaAca11AY.610.000105
ORF1ab/nsp13336A336TGcaAca11AY.690.000187
ORF1ab/nsp13336A336TGcaAca11AY.710.000475
ORF1ab/nsp13336A336AgcAgcG11AY.90.000068
ORF1ab/nsp13336A336del2gCAg--11AY.9.20.000037
ORF1ab/nsp13336A336TGcaAca11AY.9.20.000037
ORF1ab/nsp13336A336AgcAgcG11AY.910.00073
ORF1ab/nsp13336A336VgCagTa11AY.910.00073
ORF1ab/nsp13336A336AgcAgcG11AY.980.000079
ORF1ab/nsp13336A336QGCaCAa11B0.000128
ORF1ab/nsp13336A336VgCagTa11B0.000128
ORF1ab/nsp13336A336PGcaCca11B.10.000009
ORF1ab/nsp13336A336VgCagTa11B.1.10.000018
ORF1ab/nsp13336A336VgCagTa11B.1.1.2140.000055
ORF1ab/nsp13336A336VgCagTa11B.1.1.2200.001859
ORF1ab/nsp13336A336VgCagTa11B.1.1.280.000311
ORF1ab/nsp13336A336TGcaAca11B.1.1.2840.000107
ORF1ab/nsp13336A336TGcaAca11B.1.1.3180.000302
ORF1ab/nsp13336A336del2gCAg--11B.1.1.70.000001
ORF1ab/nsp13336A336del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp13336A336TGcaAca11B.1.1.700.000341
ORF1ab/nsp13336A336AgcAgcG11B.1.1600.000031
ORF1ab/nsp13336A336VgCagTa11B.1.160.160.000929
ORF1ab/nsp13336A336SGcaTca11B.1.1770.000013
ORF1ab/nsp13336A336AgcAgcG11B.1.177.530.002392
ORF1ab/nsp13336A336AgcAgcG11B.1.177.620.001192
ORF1ab/nsp13336A336del2gCAg--11B.1.177.730.000566
ORF1ab/nsp13336A336TGcaAca11B.1.1890.004292
ORF1ab/nsp13336A336AgcAgcG11B.1.2210.000071
ORF1ab/nsp13336A336VgCagTa11B.1.221.40.004167
ORF1ab/nsp13336A336TGcaAca11B.1.258.170.000104
ORF1ab/nsp13336A336VgCagTa11B.1.2820.014925
ORF1ab/nsp13336A336TGcaAca11B.1.2980.002114
ORF1ab/nsp13336A336AgcAgcG11B.1.3510.00003
ORF1ab/nsp13336A336TGcaAca11B.1.3510.00003
ORF1ab/nsp13336A336VgCagTa11B.1.36.160.001425
ORF1ab/nsp13336A336VgCagTa11B.1.4040.001302
ORF1ab/nsp13336A336TGcaAca11B.1.4270.00005
ORF1ab/nsp13336A336TGcaAca11B.1.466.20.000391
ORF1ab/nsp13336A336AgcAgcG11B.1.4700.001404
ORF1ab/nsp13336A336SGcaTca11B.1.4740.001901
ORF1ab/nsp13336A336TGcaAca11B.1.4970.000315
ORF1ab/nsp13336A336TGcaAca11B.1.5260.000024
ORF1ab/nsp13336A336TGcaAca11B.1.5750.000303
ORF1ab/nsp13336A336VgCagTa11B.1.5960.000087
ORF1ab/nsp13336A336SGcaTca11B.1.5960.000087
ORF1ab/nsp13336A336TGcaAca11B.1.617.10.000129
ORF1ab/nsp13336A336del1Gca-ca11B.1.617.20.000004
ORF1ab/nsp13336A336TGcaAca11B.1.6210.000089
ORF1ab/nsp13336A336TGcaAca11B.1.6250.002353
ORF1ab/nsp13336A336TGcaAca11B.1.6370.000073
ORF1ab/nsp13336A336delGCA---11B.340.013699
ORF1ab/nsp13336A336del2GCAC--11B.6.60.000889
ORF1ab/nsp13336A336delGCA---11C.360.000911
ORF1ab/nsp13336A336VgCagTa11P.10.000016
ORF1ab/nsp13336A336delGCA---11P.10.000016
ORF1ab/nsp13336A336VgCagTa11Q.10.000126
ORF1ab/nsp13336A336PGcaCca11Q.30.000145