CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 334 | I334V | I5658V | nonsyn | Ata | Gta | 174143 | 174140 | 0.999983 | 17236-17238 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 174140 | 174143 | All | 0.033306 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 156765 | 156768 | AY.103 | 0.973363 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 11164 | 11164 | B.1.617.2 | 0.042037 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2808 | 2808 | AY.41 | 0.825397 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 383 | 383 | AY.42 | 0.015408 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 358 | 358 | AY.20 | 0.013914 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 331 | 331 | AY.92 | 0.095088 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 219 | 219 | AY.4 | 0.000341 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 212 | 212 | B.1.1.7 | 0.00019 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 142 | 142 | AY.3 | 0.001412 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 142 | 142 | AY.46.4 | 0.023359 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 138 | 138 | B | 0.017638 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 129 | 129 | AY.44 | 0.000785 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 122 | 122 | AY.117 | 0.010311 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 95 | 95 | AY.25 | 0.000571 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 84 | 84 | AY.45 | 0.010221 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 80 | 80 | AY.43 | 0.000354 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 75 | 75 | B.1 | 0.000687 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 70 | 70 | B.1.621 | 0.006196 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 55 | 55 | AY.102 | 0.001458 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 45 | 45 | AY.108 | 0.049614 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 43 | 43 | AY.39 | 0.001063 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 43 | 43 | AY.98 | 0.003397 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 42 | 42 | B.1.258.22 | 0.112 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 39 | 39 | AY.119 | 0.001377 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 31 | 31 | AY.46 | 0.003226 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 31 | 31 | AY.46.6 | 0.002238 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 30 | 30 | AY.23 | 0.002092 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 29 | 29 | AY.5 | 0.000599 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 24 | 24 | AY.100 | 0.001104 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 19 | 19 | B.1.1.50 | 0.012899 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 17 | 17 | B.1.36 | 0.00248 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 13 | 13 | AY.111 | 0.002381 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 12 | 12 | AY.75 | 0.000672 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 10 | 10 | AY.32 | 0.005325 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 10 | 10 | AY.65 | 0.00533 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 9 | 9 | AY.24 | 0.003879 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 9 | 9 | AY.93 | 0.002458 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 7 | 7 | AY.91 | 0.005113 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 6 | 6 | AY.105 | 0.003859 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 6 | 6 | AY.22 | 0.012552 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | B.1.208 | 0.08 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 334 | I334V | Ata | Gta | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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