CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 334 & Codon = Gta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13334I334VI5658VnonsynAtaGta1741431741400.99998317236-17238

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13334I334VAtaGta174140174143All0.033306
ORF1ab/nsp13334I334VAtaGta156765156768AY.1030.973363
ORF1ab/nsp13334I334VAtaGta1116411164B.1.617.20.042037
ORF1ab/nsp13334I334VAtaGta28082808AY.410.825397
ORF1ab/nsp13334I334VAtaGta383383AY.420.015408
ORF1ab/nsp13334I334VAtaGta358358AY.200.013914
ORF1ab/nsp13334I334VAtaGta331331AY.920.095088
ORF1ab/nsp13334I334VAtaGta219219AY.40.000341
ORF1ab/nsp13334I334VAtaGta212212B.1.1.70.00019
ORF1ab/nsp13334I334VAtaGta142142AY.30.001412
ORF1ab/nsp13334I334VAtaGta142142AY.46.40.023359
ORF1ab/nsp13334I334VAtaGta138138B0.017638
ORF1ab/nsp13334I334VAtaGta129129AY.440.000785
ORF1ab/nsp13334I334VAtaGta122122AY.1170.010311
ORF1ab/nsp13334I334VAtaGta9595AY.250.000571
ORF1ab/nsp13334I334VAtaGta8484AY.450.010221
ORF1ab/nsp13334I334VAtaGta8080AY.430.000354
ORF1ab/nsp13334I334VAtaGta7575B.10.000687
ORF1ab/nsp13334I334VAtaGta7070B.1.6210.006196
ORF1ab/nsp13334I334VAtaGta5555AY.1020.001458
ORF1ab/nsp13334I334VAtaGta4545AY.1080.049614
ORF1ab/nsp13334I334VAtaGta4343AY.390.001063
ORF1ab/nsp13334I334VAtaGta4343AY.980.003397
ORF1ab/nsp13334I334VAtaGta4242B.1.258.220.112
ORF1ab/nsp13334I334VAtaGta3939AY.1190.001377
ORF1ab/nsp13334I334VAtaGta3131AY.460.003226
ORF1ab/nsp13334I334VAtaGta3131AY.46.60.002238
ORF1ab/nsp13334I334VAtaGta3030AY.230.002092
ORF1ab/nsp13334I334VAtaGta2929AY.50.000599
ORF1ab/nsp13334I334VAtaGta2525AY.260.000708
ORF1ab/nsp13334I334VAtaGta2424AY.1000.001104
ORF1ab/nsp13334I334VAtaGta2020B.1.1770.000263
ORF1ab/nsp13334I334VAtaGta1919B.1.1.500.012899
ORF1ab/nsp13334I334VAtaGta1818AY.470.00056
ORF1ab/nsp13334I334VAtaGta1717B.1.360.00248
ORF1ab/nsp13334I334VAtaGta1313AY.1110.002381
ORF1ab/nsp13334I334VAtaGta1212AY.750.000672
ORF1ab/nsp13334I334VAtaGta1010AY.1130.001424
ORF1ab/nsp13334I334VAtaGta1010AY.320.005325
ORF1ab/nsp13334I334VAtaGta1010AY.650.00533
ORF1ab/nsp13334I334VAtaGta99AY.240.003879
ORF1ab/nsp13334I334VAtaGta99AY.930.002458
ORF1ab/nsp13334I334VAtaGta99R.10.00081
ORF1ab/nsp13334I334VAtaGta88AY.1180.000501
ORF1ab/nsp13334I334VAtaGta88AY.340.000776
ORF1ab/nsp13334I334VAtaGta77AY.540.000667
ORF1ab/nsp13334I334VAtaGta77AY.910.005113
ORF1ab/nsp13334I334VAtaGta77B.1.20.000062
ORF1ab/nsp13334I334VAtaGta66AY.1050.003859
ORF1ab/nsp13334I334VAtaGta66AY.220.012552
ORF1ab/nsp13334I334VAtaGta66AY.770.006764
ORF1ab/nsp13334I334VAtaGta66B.1.10.000109
ORF1ab/nsp13334I334VAtaGta55AY.1160.001434
ORF1ab/nsp13334I334VAtaGta55AY.5.30.001687
ORF1ab/nsp13334I334VAtaGta55AY.590.002648
ORF1ab/nsp13334I334VAtaGta55AY.620.002179
ORF1ab/nsp13334I334VAtaGta55AY.9.20.000184
ORF1ab/nsp13334I334VAtaGta55P.10.000079
ORF1ab/nsp13334I334VAtaGta44AY.10.001583
ORF1ab/nsp13334I334VAtaGta44AY.290.000063
ORF1ab/nsp13334I334VAtaGta44AY.680.001095
ORF1ab/nsp13334I334VAtaGta44AY.840.00175
ORF1ab/nsp13334I334VAtaGta44AY.98.10.000194
ORF1ab/nsp13334I334VAtaGta44B.1.2400.000862
ORF1ab/nsp13334I334VAtaGta44B.1.5260.000094
ORF1ab/nsp13334I334VAtaGta33AY.1100.000338
ORF1ab/nsp13334I334VAtaGta33AY.1200.000112
ORF1ab/nsp13334I334VAtaGta33AY.1210.000406
ORF1ab/nsp13334I334VAtaGta33AY.360.000445
ORF1ab/nsp13334I334VAtaGta33AY.580.002722
ORF1ab/nsp13334I334VAtaGta33AY.75.10.000541
ORF1ab/nsp13334I334VAtaGta33AY.820.004071
ORF1ab/nsp13334I334VAtaGta33AY.900.002053
ORF1ab/nsp13334I334VAtaGta33C.36.30.001702
ORF1ab/nsp13334I334VAtaGta22AY.1060.00067
ORF1ab/nsp13334I334VAtaGta22AY.140.000176
ORF1ab/nsp13334I334VAtaGta22AY.190.002281
ORF1ab/nsp13334I334VAtaGta22AY.29.10.000441
ORF1ab/nsp13334I334VAtaGta22AY.3.10.000171
ORF1ab/nsp13334I334VAtaGta22AY.46.10.002053
ORF1ab/nsp13334I334VAtaGta22AY.5.40.000553
ORF1ab/nsp13334I334VAtaGta22AY.520.001629
ORF1ab/nsp13334I334VAtaGta22AY.550.001835
ORF1ab/nsp13334I334VAtaGta22AY.670.000929
ORF1ab/nsp13334I334VAtaGta22AY.710.00095
ORF1ab/nsp13334I334VAtaGta22AY.800.002257
ORF1ab/nsp13334I334VAtaGta22AY.870.001665
ORF1ab/nsp13334I334VAtaGta22AY.9.10.000167
ORF1ab/nsp13334I334VAtaGta22AY.950.001522
ORF1ab/nsp13334I334VAtaGta22AY.99.20.000184
ORF1ab/nsp13334I334VAtaGta22B.1.2080.08
ORF1ab/nsp13334I334VAtaGta22B.1.4290.000047
ORF1ab/nsp13334I334VAtaGta22B.1.4970.00063
ORF1ab/nsp13334I334VAtaGta22B.1.5760.001813
ORF1ab/nsp13334I334VAtaGta22B.1.6090.000959
ORF1ab/nsp13334I334VAtaGta22C.360.001821
ORF1ab/nsp13334I334VAtaGta11AU.20.002421
ORF1ab/nsp13334I334VAtaGta11AY.1040.001984
ORF1ab/nsp13334I334VAtaGta11AY.1090.00074
ORF1ab/nsp13334I334VAtaGta11AY.1140.000231
ORF1ab/nsp13334I334VAtaGta11AY.116.10.000311
ORF1ab/nsp13334I334VAtaGta11AY.130.000161
ORF1ab/nsp13334I334VAtaGta11AY.210.001898
ORF1ab/nsp13334I334VAtaGta11AY.280.00189
ORF1ab/nsp13334I334VAtaGta11AY.300.000396
ORF1ab/nsp13334I334VAtaGta11AY.330.000067
ORF1ab/nsp13334I334VAtaGta11AY.39.10.00004
ORF1ab/nsp13334I334VAtaGta11AY.4.30.000842
ORF1ab/nsp13334I334VAtaGta11AY.4.50.000107
ORF1ab/nsp13334I334VAtaGta11AY.400.000964
ORF1ab/nsp13334I334VAtaGta11AY.500.000799
ORF1ab/nsp13334I334VAtaGta11AY.570.000656
ORF1ab/nsp13334I334VAtaGta11AY.610.000105
ORF1ab/nsp13334I334VAtaGta11AY.850.000427
ORF1ab/nsp13334I334VAtaGta11AY.860.00083
ORF1ab/nsp13334I334VAtaGta11AY.880.000884
ORF1ab/nsp13334I334VAtaGta11AY.960.002075
ORF1ab/nsp13334I334VAtaGta11AY.990.001049
ORF1ab/nsp13334I334VAtaGta11AZ.20.000821
ORF1ab/nsp13334I334VAtaGta11B.1.1.2910.000742
ORF1ab/nsp13334I334VAtaGta11B.1.1.3060.000438
ORF1ab/nsp13334I334VAtaGta11B.1.1.5190.00004
ORF1ab/nsp13334I334VAtaGta11B.1.1.540.003021
ORF1ab/nsp13334I334VAtaGta11B.1.1570.002985
ORF1ab/nsp13334I334VAtaGta11B.1.177.820.000477
ORF1ab/nsp13334I334VAtaGta11B.1.2430.00007
ORF1ab/nsp13334I334VAtaGta11B.1.3110.000275
ORF1ab/nsp13334I334VAtaGta11B.1.3350.010309
ORF1ab/nsp13334I334VAtaGta11B.1.4680.005714
ORF1ab/nsp13334I334VAtaGta11B.1.5250.000113
ORF1ab/nsp13334I334VAtaGta11B.1.5810.009434
ORF1ab/nsp13334I334VAtaGta11B.1.5960.000087
ORF1ab/nsp13334I334VAtaGta11B.1.617.10.000129
ORF1ab/nsp13334I334VAtaGta11B.1.6370.000073
ORF1ab/nsp13334I334VAtaGta11B.550.00295
ORF1ab/nsp13334I334VAtaGta11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.