CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 322

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13322L322LL5646LsynttAttG2201290.58636417200-17202
ORF1ab/nsp13322L322LL5646LsynTtaCta220910.41363617200-17202
ORF1ab/nsp13322L322SL5646SnonsyntTatCa1291280.99224817200-17202
ORF1ab/nsp13322L322SL5646SnonsyntTAtCG12910.0077519417200-17202
ORF1ab/nsp13322L322VL5646VnonsynTtaGta96950.98958317200-17202
ORF1ab/nsp13322L322VL5646VnonsynTtAGtG9610.010416717200-17202
ORF1ab/nsp13322L322IL5646InonsynTtaAta45440.97777817200-17202
ORF1ab/nsp13322L322IL5646InonsynTtAAtT4510.022222217200-17202
ORF1ab/nsp13322L322del2L5646del2deltTAt--15140.93333317200-17202
ORF1ab/nsp13322L322del2L5646del2delTTa--a1510.066666717200-17202
ORF1ab/nsp13322L322FL5646FnonsynttAttT1290.7517200-17202
ORF1ab/nsp13322L322FL5646FnonsynttAttC1230.2517200-17202
ORF1ab/nsp13322L322del1L5646del1delttAtt-960.66666717200-17202
ORF1ab/nsp13322L322del1L5646del1delTta-ta930.33333317200-17202
ORF1ab/nsp13322L322delL5646deldelTTA---77117200-17202
ORF1ab/nsp13322L322XL5646XnonsyntTatAa650.83333317200-17202
ORF1ab/nsp13322L322XL5646XnonsyntTatGa610.16666717200-17202
ORF1ab/nsp13322L322PL5646PnonsynTTaCCa11117200-17202
ORF1ab/nsp13322L322YL5646YnonsyntTAtAT11117200-17202
ORF1ab/nsp13322L322ML5646MnonsynTtAAtG11117200-17202
ORF1ab/nsp13322L322RL5646RnonsynTTACGT11117200-17202

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13322L322LttAttG129220All0.000025
ORF1ab/nsp13322L322LTtaCta91220All0.000017
ORF1ab/nsp13322L322StTatCa128129All0.000024
ORF1ab/nsp13322L322StTAtCG1129All0
ORF1ab/nsp13322L322VTtaGta9596All0.000018
ORF1ab/nsp13322L322VTtAGtG196All0
ORF1ab/nsp13322L322StTatCa8585B.1.5930.923913
ORF1ab/nsp13322L322VTtaGta7373AY.40.000114
ORF1ab/nsp13322L322ITtaAta4445All0.000008
ORF1ab/nsp13322L322ITtAAtT145All0
ORF1ab/nsp13322L322LttAttG2929AY.30.000288
ORF1ab/nsp13322L322LttAttG2222B.1.2580.001464
ORF1ab/nsp13322L322LTtaCta2020AY.1210.002706
ORF1ab/nsp13322L322LttAttG1219AY.40.000019
ORF1ab/nsp13322L322LTtaCta719AY.40.000011
ORF1ab/nsp13322L322ITtaAta1919B.1.20.000167
ORF1ab/nsp13322L322LttAttG917B.1.1.70.000008
ORF1ab/nsp13322L322LTtaCta817B.1.1.70.000007
ORF1ab/nsp13322L322LTtaCta1416B.1.617.20.000053
ORF1ab/nsp13322L322LttAttG216B.1.617.20.000008
ORF1ab/nsp13322L322del2tTAt--1415All0.000003
ORF1ab/nsp13322L322del2TTa--a115All0
ORF1ab/nsp13322L322LttAttG1314AY.1030.000081
ORF1ab/nsp13322L322LTtaCta114AY.1030.000006
ORF1ab/nsp13322L322LttAttG1214AY.420.000483
ORF1ab/nsp13322L322LTtaCta214AY.420.00008
ORF1ab/nsp13322L322FttAttT912All0.000002
ORF1ab/nsp13322L322FttAttC312All0.000001
ORF1ab/nsp13322L322StTatCa1212B.10.00011
ORF1ab/nsp13322L322del1ttAtt-69All0.000001
ORF1ab/nsp13322L322del1Tta-ta39All0.000001
ORF1ab/nsp13322L322LTtaCta79B.10.000064
ORF1ab/nsp13322L322LttAttG29B.10.000018
ORF1ab/nsp13322L322delTTA---77All0.000001
ORF1ab/nsp13322L322VTtaGta77AY.30.00007
ORF1ab/nsp13322L322XtTatAa56All0.000001
ORF1ab/nsp13322L322XtTatGa16All0
ORF1ab/nsp13322L322StTatCa55B.1.1.70.000004
ORF1ab/nsp13322L322StTatCa55B.1.1770.000066
ORF1ab/nsp13322L322LttAttG55B.1.5870.009488
ORF1ab/nsp13322L322StTatCa44AY.1100.000451
ORF1ab/nsp13322L322LttAttG34AY.250.000018
ORF1ab/nsp13322L322LTtaCta14AY.250.000006
ORF1ab/nsp13322L322LTtaCta44AY.260.000113
ORF1ab/nsp13322L322StTatCa44AY.40.000006
ORF1ab/nsp13322L322LttAttG44AY.430.000018
ORF1ab/nsp13322L322ITtaAta44B.1.1.2220.000816
ORF1ab/nsp13322L322VTtaGta44B.1.1.5190.000159
ORF1ab/nsp13322L322VTtaGta44B.1.177.570.001124
ORF1ab/nsp13322L322del2tTAt--44B.1.20.000035
ORF1ab/nsp13322L322LTtaCta33AY.290.000047
ORF1ab/nsp13322L322del2tTAt--23B.10.000018
ORF1ab/nsp13322L322del2TTa--a13B.10.000009
ORF1ab/nsp13322L322StTatCa33B.1.20.000026
ORF1ab/nsp13322L322LTtaCta23B.1.2210.000142
ORF1ab/nsp13322L322LttAttG13B.1.2210.000071
ORF1ab/nsp13322L322LTtaCta33B.1.4080.01107
ORF1ab/nsp13322L322LTtaCta33B.1.6030.031915
ORF1ab/nsp13322L322ITtaAta120.055556
ORF1ab/nsp13322L322ITtAAtT120.055556
ORF1ab/nsp13322L322LttAttG22AY.360.000296
ORF1ab/nsp13322L322LTtaCta22AY.390.000049
ORF1ab/nsp13322L322VTtaGta22AY.4.20.000043
ORF1ab/nsp13322L322ITtaAta22AY.440.000012
ORF1ab/nsp13322L322StTatCa22AY.440.000012
ORF1ab/nsp13322L322LTtaCta22AY.46.60.000144
ORF1ab/nsp13322L322del2tTAt--22B0.000256
ORF1ab/nsp13322L322FttAttT22B0.000256
ORF1ab/nsp13322L322ITtaAta22B.10.000018
ORF1ab/nsp13322L322del1ttAtt-22B.10.000018
ORF1ab/nsp13322L322delTTA---22B.10.000018
ORF1ab/nsp13322L322LttAttG22B.1.1.1700.002494
ORF1ab/nsp13322L322LTtaCta12B.1.1770.000013
ORF1ab/nsp13322L322LttAttG12B.1.1770.000013
ORF1ab/nsp13322L322del1Tta-ta12B.1.20.000009
ORF1ab/nsp13322L322del1ttAtt-12B.1.20.000009
ORF1ab/nsp13322L322StTatCa12B.1.2210.000071
ORF1ab/nsp13322L322StTAtCG12B.1.2210.000071
ORF1ab/nsp13322L322ITtaAta22B.1.3510.000059
ORF1ab/nsp13322L322FttAttT22B.1.5960.000174
ORF1ab/nsp13322L322ITtaAta22B.1.5960.000174
ORF1ab/nsp13322L322LTtaCta22B.1.6210.000177
ORF1ab/nsp13322L322StTatCa22P.10.000032
ORF1ab/nsp13322L322LTtaCta22Q.30.00029
ORF1ab/nsp13322L322FttAttT110.055556
ORF1ab/nsp13322L322MTtAAtG110.055556
ORF1ab/nsp13322L322LttAttG110.055556
ORF1ab/nsp13322L322delTTA---11A0.000387
ORF1ab/nsp13322L322LttAttG11A.2.50.000499
ORF1ab/nsp13322L322RTTACGT11All0
ORF1ab/nsp13322L322PTTaCCa11All0
ORF1ab/nsp13322L322MTtAAtG11All0
ORF1ab/nsp13322L322YtTAtAT11All0
ORF1ab/nsp13322L322ITtaAta11AU.20.002421
ORF1ab/nsp13322L322XtTatAa11AY.1000.000046
ORF1ab/nsp13322L322LTtaCta11AY.1020.000027
ORF1ab/nsp13322L322LttAttG11AY.116.10.000311
ORF1ab/nsp13322L322StTatCa11AY.30.00001
ORF1ab/nsp13322L322FttAttT11AY.40.000002
ORF1ab/nsp13322L322LTtaCta11AY.4.20.000022
ORF1ab/nsp13322L322LttAttG11AY.4.40.000409
ORF1ab/nsp13322L322del2tTAt--11AY.430.000004
ORF1ab/nsp13322L322delTTA---11AY.430.000004
ORF1ab/nsp13322L322ITtaAta11AY.430.000004
ORF1ab/nsp13322L322VTtAGtG11AY.440.000006
ORF1ab/nsp13322L322XtTatAa11AY.440.000006
ORF1ab/nsp13322L322LttAttG11AY.450.000122
ORF1ab/nsp13322L322VTtaGta11AY.46.20.000635
ORF1ab/nsp13322L322LttAttG11AY.470.000031
ORF1ab/nsp13322L322LttAttG11AY.50.000021
ORF1ab/nsp13322L322FttAttC11AY.610.000105
ORF1ab/nsp13322L322StTatCa11AY.610.000105
ORF1ab/nsp13322L322VTtaGta11AY.740.000116
ORF1ab/nsp13322L322StTatCa11AY.750.000056
ORF1ab/nsp13322L322RTTACGT11AY.9.20.000037
ORF1ab/nsp13322L322ITtaAta11AY.980.000079
ORF1ab/nsp13322L322StTatCa11AY.98.10.000048
ORF1ab/nsp13322L322del1ttAtt-11AY.99.20.000092
ORF1ab/nsp13322L322ITtaAta11B0.000128
ORF1ab/nsp13322L322delTTA---11B0.000128
ORF1ab/nsp13322L322XtTatGa11B0.000128
ORF1ab/nsp13322L322del1ttAtt-11B0.000128
ORF1ab/nsp13322L322FttAttT11B.10.000009
ORF1ab/nsp13322L322XtTatAa11B.10.000009
ORF1ab/nsp13322L322VTtaGta11B.1.10.000018
ORF1ab/nsp13322L322LTtaCta11B.1.10.000018
ORF1ab/nsp13322L322FttAttT11B.1.10.000018
ORF1ab/nsp13322L322del2tTAt--11B.1.1.1980.001468
ORF1ab/nsp13322L322ITtaAta11B.1.1.3160.000925
ORF1ab/nsp13322L322ITtaAta11B.1.1.3720.000689
ORF1ab/nsp13322L322LTtaCta11B.1.1.3740.002375
ORF1ab/nsp13322L322del1Tta-ta11B.1.1.390.00051
ORF1ab/nsp13322L322ITtaAta11B.1.1.5170.006803
ORF1ab/nsp13322L322del2tTAt--11B.1.1.70.000001
ORF1ab/nsp13322L322FttAttC11B.1.160.320.004292
ORF1ab/nsp13322L322PTTaCCa11B.1.1770.000013
ORF1ab/nsp13322L322StTatCa11B.1.177.430.001477
ORF1ab/nsp13322L322LTtaCta11B.1.20.000009
ORF1ab/nsp13322L322ITtaAta11B.1.3110.000275
ORF1ab/nsp13322L322del1ttAtt-11B.1.3360.002439
ORF1ab/nsp13322L322XtTatAa11B.1.3670.000792
ORF1ab/nsp13322L322ITtaAta11B.1.3770.004566
ORF1ab/nsp13322L322del2tTAt--11B.1.4000.000429
ORF1ab/nsp13322L322del2tTAt--11B.1.4160.001269
ORF1ab/nsp13322L322ITtaAta11B.1.4270.00005
ORF1ab/nsp13322L322LttAttG11B.1.5410.004425
ORF1ab/nsp13322L322FttAttC11B.1.5460.003704
ORF1ab/nsp13322L322LttAttG11B.1.5610.000397
ORF1ab/nsp13322L322del2tTAt--11B.1.5800.004065
ORF1ab/nsp13322L322LttAttG11B.1.5950.000261
ORF1ab/nsp13322L322LTtaCta11B.1.6020.006536
ORF1ab/nsp13322L322ITtaAta11B.1.617.10.000129
ORF1ab/nsp13322L322VTtaGta11B.1.617.20.000004
ORF1ab/nsp13322L322XtTatAa11B.1.617.20.000004
ORF1ab/nsp13322L322del1Tta-ta11B.1.617.20.000004
ORF1ab/nsp13322L322delTTA---11B.1.617.20.000004
ORF1ab/nsp13322L322ITtaAta11B.1.617.20.000004
ORF1ab/nsp13322L322FttAttT11B.1.6280.000352
ORF1ab/nsp13322L322YtTAtAT11B.4.40.018868
ORF1ab/nsp13322L322VTtaGta11C.36.30.000567
ORF1ab/nsp13322L322delTTA---11P.10.000016
ORF1ab/nsp13322L322LTtaCta11P.10.000016