CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 319 & Codon = gGg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13319E319GE5643GnonsyngAggGg2172160.99539217191-17193

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13319E319GgAggGg216217All0.000041
ORF1ab/nsp13319E319GgAggGg6363B.1.20.000555
ORF1ab/nsp13319E319GgAggGg4040B.1.1.70.000036
ORF1ab/nsp13319E319GgAggGg2323AY.1020.00061
ORF1ab/nsp13319E319GgAggGg1212B.1.6310.040404
ORF1ab/nsp13319E319GgAggGg1111B.1.6370.000804
ORF1ab/nsp13319E319GgAggGg88B.1.2580.000532
ORF1ab/nsp13319E319GgAggGg77B.1.5260.000165
ORF1ab/nsp13319E319GgAggGg55AY.1030.000031
ORF1ab/nsp13319E319GgAggGg55R.10.00045
ORF1ab/nsp13319E319GgAggGg44AY.440.000024
ORF1ab/nsp13319E319GgAggGg44B.1.617.20.000015
ORF1ab/nsp13319E319GgAggGg33AY.250.000018
ORF1ab/nsp13319E319GgAggGg23AY.40.000003
ORF1ab/nsp13319E319GgAggGg33B.1.2340.000396
ORF1ab/nsp13319E319GgAggGg22AY.1000.000092
ORF1ab/nsp13319E319GgAggGg22AY.1160.000574
ORF1ab/nsp13319E319GgAggGg22AZ.30.00304
ORF1ab/nsp13319E319GgAggGg22B.1.6210.000177
ORF1ab/nsp13319E319GgAggGg11AY.1130.000142
ORF1ab/nsp13319E319GgAggGg11AY.300.000396
ORF1ab/nsp13319E319GgAggGg11AY.390.000025
ORF1ab/nsp13319E319GgAggGg11AY.4.2.10.000149
ORF1ab/nsp13319E319GgAggGg11AY.430.000004
ORF1ab/nsp13319E319GgAggGg11AY.460.000104
ORF1ab/nsp13319E319GgAggGg11AY.46.40.000165
ORF1ab/nsp13319E319GgAggGg11AY.46.60.000072
ORF1ab/nsp13319E319GgAggGg11AY.710.000475
ORF1ab/nsp13319E319GgAggGg11AY.740.000116
ORF1ab/nsp13319E319GgAggGg11AY.9.20.000037
ORF1ab/nsp13319E319GgAggGg11B.10.000009
ORF1ab/nsp13319E319GgAggGg11B.1.177.810.000189
ORF1ab/nsp13319E319GgAggGg11B.1.1890.004292
ORF1ab/nsp13319E319GgAggGg11B.1.5960.000087
ORF1ab/nsp13319E319GgAggGg11D.20.000075
ORF1ab/nsp13319E319GgAggGg11P.1.140.000048
ORF1ab/nsp13319E319GgAggGg11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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