CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 312 | A312A | A5636A | syn | gcC | gcT | 4242 | 3645 | 0.859264 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312A | A5636A | syn | gcC | gcA | 4242 | 591 | 0.139321 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312A | A5636A | syn | gcC | gcG | 4242 | 6 | 0.00141443 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312T | A5636T | nonsyn | Gcc | Acc | 29 | 28 | 0.965517 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312T | A5636T | nonsyn | GcC | AcA | 29 | 1 | 0.0344828 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312S | A5636S | nonsyn | Gcc | Tcc | 14 | 14 | 1 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312V | A5636V | nonsyn | gCc | gTc | 13 | 13 | 1 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312del | A5636del | del | GCC | --- | 7 | 7 | 1 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312P | A5636P | nonsyn | Gcc | Ccc | 5 | 5 | 1 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312del1 | A5636del1 | del | Gcc | -cc | 3 | 3 | 1 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312D | A5636D | nonsyn | gCc | gAc | 2 | 2 | 1 | 17170-17172 |
ORF1ab/nsp13 | 312 | A312G | A5636G | nonsyn | gCC | gGG | 1 | 1 | 1 | 17170-17172 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3645 | 4242 | All | 0.000697 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 591 | 4242 | All | 0.000113 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcG | 6 | 4242 | All | 0.000001 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 718 | 1004 | B.1.1.7 | 0.000643 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 282 | 1004 | B.1.1.7 | 0.000252 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcG | 4 | 1004 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 256 | 303 | AY.4 | 0.000398 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 47 | 303 | AY.4 | 0.000073 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 262 | 282 | B.1.2 | 0.002307 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 20 | 282 | B.1.2 | 0.000176 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 261 | 266 | AY.43 | 0.001156 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 5 | 266 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 227 | 227 | B.1.1.214 | 0.012589 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 222 | 222 | P.7 | 0.969432 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 138 | 160 | AY.44 | 0.00084 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 22 | 160 | AY.44 | 0.000134 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 126 | 139 | B.1.617.2 | 0.000474 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 13 | 139 | B.1.617.2 | 0.000049 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 134 | 135 | P.1 | 0.002111 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 135 | P.1 | 0.000016 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 119 | 125 | B.1 | 0.00109 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 6 | 125 | B.1 | 0.000055 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 85 | 92 | AY.25 | 0.000511 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 7 | 92 | AY.25 | 0.000042 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 83 | 91 | B.1.177 | 0.001093 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 8 | 91 | B.1.177 | 0.000105 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 61 | 62 | AY.26 | 0.001727 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 62 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 52 | 61 | B.1.1 | 0.000943 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 9 | 61 | B.1.1 | 0.000163 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 55 | 57 | AY.103 | 0.000341 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 57 | AY.103 | 0.000012 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 50 | 50 | AY.23 | 0.003487 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 42 | 42 | B.1.637 | 0.003069 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 33 | 33 | B.1.1.284 | 0.003544 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 32 | 32 | B.1.599 | 0.116788 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 28 | 29 | All | 0.000005 |
ORF1ab/nsp13 | 312 | A312T | GcC | AcA | 1 | 29 | All | 0 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 26 | 29 | AY.39 | 0.000642 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 3 | 29 | AY.39 | 0.000074 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 27 | 27 | AY.4.3 | 0.022727 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 23 | 23 | B | 0.00294 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 23 | 23 | B.1.1.28 | 0.007158 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 20 | 22 | AY.100 | 0.00092 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 22 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 21 | 22 | AY.102 | 0.000557 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 22 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 19 | 19 | A.2 | 0.012574 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 17 | 17 | B.1.160 | 0.00053 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 16 | 16 | AY.99.2 | 0.001475 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 15 | 16 | B.1.526 | 0.000353 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 16 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 16 | 16 | B.1.582 | 0.007851 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 13 | 15 | AY.20 | 0.000505 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 15 | AY.20 | 0.000078 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 12 | 15 | AY.3 | 0.000119 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 3 | 15 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 15 | 15 | AY.46.6 | 0.001083 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 14 | 14 | All | 0.000003 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 12 | 14 | B.1.351 | 0.000357 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 14 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 13 | 13 | All | 0.000002 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 12 | 12 | B.1.36.25 | 0.02649 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 11 | AY.29 | 0.000095 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 5 | 11 | AY.29 | 0.000079 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 11 | 11 | AY.32 | 0.005857 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 9 | 11 | P.2 | 0.00168 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 11 | P.2 | 0.000373 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 9 | 10 | AY.4.2 | 0.000195 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 10 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 8 | 10 | B.1.258 | 0.000532 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 10 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 9 | AY.120 | 0.000223 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 3 | 9 | AY.120 | 0.000112 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 7 | 9 | AY.9.2 | 0.000257 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 9 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 9 | 9 | B.1.1.70 | 0.00307 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 7 | 8 | AY.5 | 0.000145 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 8 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 8 | 8 | AY.5.4 | 0.002214 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 8 | 8 | B.1.1.294 | 0.010127 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 8 | B.1.234 | 0.000792 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 8 | B.1.234 | 0.000264 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 7 | 8 | B.1.525 | 0.000792 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 8 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 7 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 7 | AY.118 | 0.000376 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 7 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 7 | AY.30 | 0.001583 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 3 | 7 | AY.30 | 0.001187 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 7 | 7 | B.1.1.521 | 0.037433 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 7 | 7 | B.1.517 | 0.002989 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 7 | 7 | P.1.10 | 0.001886 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 6 | AY.5.2 | 0.014778 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 6 | AY.75 | 0.000168 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 3 | 6 | AY.75 | 0.000168 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp13 | 312 | A312P | Gcc | Ccc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 5 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 5 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 5 | B.1.177.54 | 0.002426 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 5 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 4 | 5 | B.1.311 | 0.001098 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 5 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | AY.15 | 0.008889 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | B.1.350 | 0.01173 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 4 | Q.1 | 0.000379 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 4 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp13 | 312 | A312del1 | Gcc | -cc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 312 | A312T | GcC | AcA | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 3 | AY.61 | 0.00021 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 3 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 3 | 3 | AY.72 | 0.004082 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | B.1.1.376 | 0.017857 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp13 | 312 | A312P | Gcc | Ccc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp13 | 312 | A312D | gCc | gAc | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 2 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 2 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcG | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.1.134 | 0.022727 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.1.304 | 0.005618 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp13 | 312 | A312P | Gcc | Ccc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 312 | A312del1 | Gcc | -cc | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 312 | A312G | gCC | gGG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 312 | A312D | gCc | gAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 312 | A312del1 | Gcc | -cc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 312 | A312G | gCC | gGG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 312 | A312D | gCc | gAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.511 | 0.034483 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.562 | 0.018519 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcA | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp13 | 312 | A312T | Gcc | Acc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 312 | A312S | Gcc | Tcc | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp13 | 312 | A312V | gCc | gTc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp13 | 312 | A312del | GCC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp13 | 312 | A312A | gcC | gcT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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