CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 31 | Y31Y | Y5355Y | syn | taC | taT | 6587 | 6587 | 1 | 16327-16329 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 6587 | 6587 | All | 0.00126 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1012 | 1012 | AY.103 | 0.006284 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 702 | 702 | B.1.1.7 | 0.000628 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 578 | 578 | B.1.617.2 | 0.002176 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 471 | 471 | AY.4 | 0.000733 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 320 | 320 | AY.44 | 0.001948 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 283 | 283 | B.1.351 | 0.008413 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 254 | 254 | AY.43 | 0.001125 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 212 | 212 | B.1.2 | 0.001867 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 180 | 180 | P.1 | 0.002836 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 175 | 175 | B.1.628 | 0.061663 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 150 | 150 | B.1 | 0.001374 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 138 | 138 | B.1.258 | 0.009183 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 137 | 137 | B.1.36 | 0.019988 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 135 | 135 | AY.102 | 0.003579 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 130 | 130 | AY.59 | 0.068856 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 116 | 116 | B.1.1.265 | 0.365931 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 109 | 109 | AY.25 | 0.000656 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 75 | 75 | B.1.404 | 0.097656 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 52 | 52 | B.1.177 | 0.000685 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 51 | 51 | B.1.369 | 0.014546 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 37 | 37 | B.1.160.14 | 0.07839 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 35 | 35 | AY.39.1 | 0.001386 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 35 | 35 | B.1.1 | 0.000635 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 33 | 33 | AY.46.6 | 0.002383 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 32 | 32 | B.1.429 | 0.000753 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 31 | 31 | AY.99.2 | 0.002857 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 30 | 30 | B.1.1.33 | 0.012626 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 28 | 28 | B.1.621 | 0.002479 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 27 | 27 | AY.111 | 0.004945 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 26 | 26 | AY.3 | 0.000259 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 24 | 24 | AY.114 | 0.005547 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 23 | 23 | AY.5.4 | 0.006364 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 23 | 23 | B.1.1.277 | 0.017451 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 23 | 23 | Q.1 | 0.002906 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 22 | 22 | B.1.240 | 0.004742 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 21 | 21 | AY.119 | 0.000741 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 21 | 21 | B.1.393 | 0.6 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 21 | 21 | B.1.576 | 0.019039 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 18 | 18 | P.1.14 | 0.00086 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 17 | 17 | AY.39 | 0.00042 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 17 | 17 | B.1.1.214 | 0.000943 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 15 | 15 | AY.33 | 0.001002 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 15 | 15 | B.1.575 | 0.004551 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 14 | 14 | B.1.160.16 | 0.013011 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 14 | 14 | B.1.311 | 0.003844 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 14 | 14 | B.3 | 0.011628 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 13 | 13 | B.1.1.298 | 0.011207 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 12 | 12 | B.1.177.28 | 0.088889 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 11 | 11 | B.1.620 | 0.010407 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 10 | 10 | B.1.1.311 | 0.003582 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 10 | 10 | B.1.36.8 | 0.01 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 9 | 9 | B.1.1.176 | 0.003954 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 7 | 7 | B.1.1.258 | 0.022801 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 7 | 7 | B.1.521 | 0.034826 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 7 | 7 | B.1.629 | 0.093333 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 6 | 6 | N.5 | 0.010601 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | AU.2 | 0.012107 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | AY.93 | 0.001365 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | B.1.177.17 | 0.004105 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | B.1.177.50 | 0.023474 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | B.1.258.16 | 0.008183 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | B.1.1.10 | 0.004459 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | B.1.1.128 | 0.021277 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | B.1.177.32 | 0.004049 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | B.1.586 | 0.032967 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.1.133 | 0.016949 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.1.194 | 0.009901 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.1.204 | 0.006079 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.160.30 | 0.005952 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.397 | 0.009709 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.540 | 0.019417 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.14 | 0.017241 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.224 | 0.014286 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.242 | 0.043478 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp13 | 31 | Y31Y | taC | taT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|