CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 31

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1331Y31YY5355YsyntaCtaT65876587116327-16329
ORF1ab/nsp1331Y31delY5355deldelTAC---8181116327-16329
ORF1ab/nsp1331Y31HY5355HnonsynTacCac66640.96969716327-16329
ORF1ab/nsp1331Y31HY5355HnonsynTaCCaT6620.03030316327-16329
ORF1ab/nsp1331Y31CY5355CnonsyntActGc22210.95454516327-16329
ORF1ab/nsp1331Y31CY5355CnonsyntACtGT2210.045454516327-16329
ORF1ab/nsp1331Y31NY5355NnonsynTacAac12100.83333316327-16329
ORF1ab/nsp1331Y31NY5355NnonsynTaCAaT1220.16666716327-16329
ORF1ab/nsp1331Y31FY5355FnonsyntActTc99116327-16329
ORF1ab/nsp1331Y31del1Y5355del1delTac-ac730.42857116327-16329
ORF1ab/nsp1331Y31del1Y5355del1deltaCta-730.42857116327-16329
ORF1ab/nsp1331Y31del1Y5355del1deltAct-c710.14285716327-16329
ORF1ab/nsp1331Y31del2Y5355del2deltACt--640.66666716327-16329
ORF1ab/nsp1331Y31XY5355XnonsyntaCtaA630.516327-16329
ORF1ab/nsp1331Y31XY5355XnonsyntaCtaG630.516327-16329
ORF1ab/nsp1331Y31del2Y5355del2delTAc--c620.33333316327-16329
ORF1ab/nsp1331Y31DY5355DnonsynTacGac33116327-16329
ORF1ab/nsp1331Y31SY5355SnonsyntActCc22116327-16329
ORF1ab/nsp1331Y31VY5355VnonsynTACGTG210.516327-16329
ORF1ab/nsp1331Y31VY5355VnonsynTAcGTc210.516327-16329
ORF1ab/nsp1331Y31EY5355EnonsynTaCGaG11116327-16329
ORF1ab/nsp1331Y31GY5355GnonsynTACGGT11116327-16329
ORF1ab/nsp1331Y31LY5355LnonsyntACtTG11116327-16329

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1331Y31YtaCtaT65876587All0.00126
ORF1ab/nsp1331Y31YtaCtaT10121012AY.1030.006284
ORF1ab/nsp1331Y31YtaCtaT702702B.1.1.70.000628
ORF1ab/nsp1331Y31YtaCtaT578578B.1.617.20.002176
ORF1ab/nsp1331Y31YtaCtaT471471AY.40.000733
ORF1ab/nsp1331Y31YtaCtaT320320AY.440.001948
ORF1ab/nsp1331Y31YtaCtaT283283B.1.3510.008413
ORF1ab/nsp1331Y31YtaCtaT254254AY.430.001125
ORF1ab/nsp1331Y31YtaCtaT212212B.1.20.001867
ORF1ab/nsp1331Y31YtaCtaT180180P.10.002836
ORF1ab/nsp1331Y31YtaCtaT175175B.1.6280.061663
ORF1ab/nsp1331Y31YtaCtaT150150B.10.001374
ORF1ab/nsp1331Y31YtaCtaT138138B.1.2580.009183
ORF1ab/nsp1331Y31YtaCtaT137137B.1.360.019988
ORF1ab/nsp1331Y31YtaCtaT135135AY.1020.003579
ORF1ab/nsp1331Y31YtaCtaT130130AY.590.068856
ORF1ab/nsp1331Y31YtaCtaT116116B.1.1.2650.365931
ORF1ab/nsp1331Y31YtaCtaT109109AY.250.000656
ORF1ab/nsp1331Y31delTAC---8181All0.000015
ORF1ab/nsp1331Y31YtaCtaT7575B.1.4040.097656
ORF1ab/nsp1331Y31HTacCac6466All0.000012
ORF1ab/nsp1331Y31HTaCCaT266All0
ORF1ab/nsp1331Y31YtaCtaT5252B.1.1770.000685
ORF1ab/nsp1331Y31YtaCtaT5151B.1.3690.014546
ORF1ab/nsp1331Y31delTAC---4040B.1.1.70.000036
ORF1ab/nsp1331Y31YtaCtaT3737B.1.160.140.07839
ORF1ab/nsp1331Y31YtaCtaT3535AY.39.10.001386
ORF1ab/nsp1331Y31YtaCtaT3535B.1.10.000635
ORF1ab/nsp1331Y31YtaCtaT3333AY.46.60.002383
ORF1ab/nsp1331Y31YtaCtaT3232B.1.4290.000753
ORF1ab/nsp1331Y31YtaCtaT3131AY.99.20.002857
ORF1ab/nsp1331Y31YtaCtaT3030B.1.1.330.012626
ORF1ab/nsp1331Y31YtaCtaT2828B.1.6210.002479
ORF1ab/nsp1331Y31YtaCtaT2727AY.1110.004945
ORF1ab/nsp1331Y31YtaCtaT2626AY.30.000259
ORF1ab/nsp1331Y31YtaCtaT2424AY.1140.005547
ORF1ab/nsp1331Y31YtaCtaT2323AY.5.40.006364
ORF1ab/nsp1331Y31YtaCtaT2323B.1.1.2770.017451
ORF1ab/nsp1331Y31YtaCtaT2323Q.10.002906
ORF1ab/nsp1331Y31CtActGc2122All0.000004
ORF1ab/nsp1331Y31CtACtGT122All0
ORF1ab/nsp1331Y31YtaCtaT2222B.1.2400.004742
ORF1ab/nsp1331Y31YtaCtaT2121AY.1190.000741
ORF1ab/nsp1331Y31HTacCac2121AY.430.000093
ORF1ab/nsp1331Y31YtaCtaT2121B.1.3930.6
ORF1ab/nsp1331Y31YtaCtaT2121B.1.5760.019039
ORF1ab/nsp1331Y31YtaCtaT1919AY.4.20.000412
ORF1ab/nsp1331Y31YtaCtaT1919B.1.1.5190.000755
ORF1ab/nsp1331Y31YtaCtaT1818B.1.1600.000561
ORF1ab/nsp1331Y31YtaCtaT1818P.1.140.00086
ORF1ab/nsp1331Y31YtaCtaT1717AY.390.00042
ORF1ab/nsp1331Y31YtaCtaT1717B.1.1.2140.000943
ORF1ab/nsp1331Y31YtaCtaT1616AY.260.000453
ORF1ab/nsp1331Y31YtaCtaT1616AY.290.000252
ORF1ab/nsp1331Y31YtaCtaT1616B.1.2210.001137
ORF1ab/nsp1331Y31YtaCtaT1515AY.330.001002
ORF1ab/nsp1331Y31YtaCtaT1515AY.750.00084
ORF1ab/nsp1331Y31YtaCtaT1515B.1.5750.004551
ORF1ab/nsp1331Y31YtaCtaT1515C.370.001741
ORF1ab/nsp1331Y31YtaCtaT1414B.1.160.160.013011
ORF1ab/nsp1331Y31YtaCtaT1414B.1.3110.003844
ORF1ab/nsp1331Y31YtaCtaT1414B.30.011628
ORF1ab/nsp1331Y31YtaCtaT1313AY.420.000523
ORF1ab/nsp1331Y31YtaCtaT1313B.1.1.2980.011207
ORF1ab/nsp1331Y31YtaCtaT1313Q.80.002144
ORF1ab/nsp1331Y31NTacAac1012All0.000002
ORF1ab/nsp1331Y31NTaCAaT212All0
ORF1ab/nsp1331Y31YtaCtaT1212B.1.177.280.088889
ORF1ab/nsp1331Y31YtaCtaT1111AY.230.000767
ORF1ab/nsp1331Y31YtaCtaT1111AY.470.000342
ORF1ab/nsp1331Y31HTacCac1111B.1.1.70.00001
ORF1ab/nsp1331Y31YtaCtaT1111B.1.6200.010407
ORF1ab/nsp1331Y31YtaCtaT1010AY.980.00079
ORF1ab/nsp1331Y31HTacCac1010AY.98.10.000484
ORF1ab/nsp1331Y31YtaCtaT1010B.1.1.3110.003582
ORF1ab/nsp1331Y31YtaCtaT1010B.1.2430.000696
ORF1ab/nsp1331Y31YtaCtaT1010B.1.36.80.01
ORF1ab/nsp1331Y31FtActTc99All0.000002
ORF1ab/nsp1331Y31YtaCtaT99AY.1000.000414
ORF1ab/nsp1331Y31YtaCtaT99B.1.1.1760.003954
ORF1ab/nsp1331Y31CtActGc99B.1.1.70.000008
ORF1ab/nsp1331Y31YtaCtaT99B.1.6370.000658
ORF1ab/nsp1331Y31YtaCtaT88AY.1180.000501
ORF1ab/nsp1331Y31YtaCtaT88B.1.5960.000697
ORF1ab/nsp1331Y31del1taCta-37All0.000001
ORF1ab/nsp1331Y31del1Tac-ac37All0.000001
ORF1ab/nsp1331Y31del1tAct-c17All0
ORF1ab/nsp1331Y31YtaCtaT77AY.60.000288
ORF1ab/nsp1331Y31YtaCtaT77AY.610.000733
ORF1ab/nsp1331Y31YtaCtaT77B.1.1.2580.022801
ORF1ab/nsp1331Y31delTAC---77B.1.1770.000092
ORF1ab/nsp1331Y31YtaCtaT77B.1.5210.034826
ORF1ab/nsp1331Y31YtaCtaT77B.1.6290.093333
ORF1ab/nsp1331Y31del2tACt--46All0.000001
ORF1ab/nsp1331Y31XtaCtaG36All0.000001
ORF1ab/nsp1331Y31XtaCtaA36All0.000001
ORF1ab/nsp1331Y31del2TAc--c26All0
ORF1ab/nsp1331Y31YtaCtaT66AY.140.000528
ORF1ab/nsp1331Y31YtaCtaT66AY.200.000233
ORF1ab/nsp1331Y31YtaCtaT66AY.50.000124
ORF1ab/nsp1331Y31YtaCtaT66B.1.4270.000303
ORF1ab/nsp1331Y31YtaCtaT66B.1.5950.001566
ORF1ab/nsp1331Y31YtaCtaT66N.50.010601
ORF1ab/nsp1331Y31YtaCtaT55AU.20.012107
ORF1ab/nsp1331Y31YtaCtaT55AY.460.00052
ORF1ab/nsp1331Y31YtaCtaT55AY.930.001365
ORF1ab/nsp1331Y31YtaCtaT55B.1.1.2160.004452
ORF1ab/nsp1331Y31YtaCtaT55B.1.1.280.001556
ORF1ab/nsp1331Y31NTacAac55B.1.1.70.000004
ORF1ab/nsp1331Y31YtaCtaT55B.1.177.170.004105
ORF1ab/nsp1331Y31YtaCtaT55B.1.177.500.023474
ORF1ab/nsp1331Y31YtaCtaT55B.1.258.160.008183
ORF1ab/nsp1331Y31YtaCtaT55B.1.5260.000118
ORF1ab/nsp1331Y31YtaCtaT55P.20.000933
ORF1ab/nsp1331Y31YtaCtaT55Q.30.000725
ORF1ab/nsp1331Y31NTacAac240.111111
ORF1ab/nsp1331Y31NTaCAaT240.111111
ORF1ab/nsp1331Y31HTacCac44AY.1030.000025
ORF1ab/nsp1331Y31YtaCtaT44AY.1200.000149
ORF1ab/nsp1331Y31YtaCtaT44AY.300.001583
ORF1ab/nsp1331Y31YtaCtaT44AY.34.10.00204
ORF1ab/nsp1331Y31YtaCtaT44AY.4.50.00043
ORF1ab/nsp1331Y31delTAC---44AY.430.000018
ORF1ab/nsp1331Y31YtaCtaT44AY.75.10.000721
ORF1ab/nsp1331Y31YtaCtaT44AY.9.10.000335
ORF1ab/nsp1331Y31YtaCtaT44AY.98.10.000194
ORF1ab/nsp1331Y31delTAC---44B.10.000037
ORF1ab/nsp1331Y31YtaCtaT44B.1.1.100.004459
ORF1ab/nsp1331Y31YtaCtaT44B.1.1.4340.001394
ORF1ab/nsp1331Y31del1Tac-ac34B.1.1.70.000003
ORF1ab/nsp1331Y31del1taCta-14B.1.1.70.000001
ORF1ab/nsp1331Y31YtaCtaT44B.1.177.570.001124
ORF1ab/nsp1331Y31YtaCtaT44B.1.351.20.00121
ORF1ab/nsp1331Y31YtaCtaT44B.400.001457
ORF1ab/nsp1331Y31YtaCtaT33A.10.000846
ORF1ab/nsp1331Y31DTacGac33All0.000001
ORF1ab/nsp1331Y31YtaCtaT33AY.360.000445
ORF1ab/nsp1331Y31YtaCtaT33AY.380.001498
ORF1ab/nsp1331Y31delTAC---33AY.40.000005
ORF1ab/nsp1331Y31YtaCtaT33AY.4.40.001227
ORF1ab/nsp1331Y31delTAC---33AY.4.50.000322
ORF1ab/nsp1331Y31YtaCtaT33AY.450.000365
ORF1ab/nsp1331Y31YtaCtaT33AY.46.40.000494
ORF1ab/nsp1331Y31FtActTc33AY.5.30.001012
ORF1ab/nsp1331Y31YtaCtaT33AY.740.000347
ORF1ab/nsp1331Y31YtaCtaT33AY.9.20.00011
ORF1ab/nsp1331Y31YtaCtaT33AY.960.006224
ORF1ab/nsp1331Y31YtaCtaT33B.1.1.1280.021277
ORF1ab/nsp1331Y31CtActGc33B.1.1770.00004
ORF1ab/nsp1331Y31YtaCtaT33B.1.177.320.004049
ORF1ab/nsp1331Y31YtaCtaT33B.1.2340.000396
ORF1ab/nsp1331Y31YtaCtaT33B.1.5860.032967
ORF1ab/nsp1331Y31HTacCac33B.1.617.20.000011
ORF1ab/nsp1331Y31delTAC---33B.1.617.20.000011
ORF1ab/nsp1331Y31YtaCtaT33D.20.000225
ORF1ab/nsp1331Y31YtaCtaT33P.1.120.001452
ORF1ab/nsp1331Y31YtaCtaT220.111111
ORF1ab/nsp1331Y31delTAC---220.111111
ORF1ab/nsp1331Y31HTaCCaT220.111111
ORF1ab/nsp1331Y31XtaCtaA120.055556
ORF1ab/nsp1331Y31VTAcGTc120.055556
ORF1ab/nsp1331Y31VTACGTG120.055556
ORF1ab/nsp1331Y31XtaCtaG120.055556
ORF1ab/nsp1331Y31YtaCtaT22A.2.50.000998
ORF1ab/nsp1331Y31StActCc22All0
ORF1ab/nsp1331Y31VTAcGTc12All0
ORF1ab/nsp1331Y31VTACGTG12All0
ORF1ab/nsp1331Y31YtaCtaT22AY.1170.000169
ORF1ab/nsp1331Y31HTacCac22AY.1180.000125
ORF1ab/nsp1331Y31YtaCtaT22AY.1210.000271
ORF1ab/nsp1331Y31YtaCtaT22AY.130.000322
ORF1ab/nsp1331Y31YtaCtaT22AY.160.000759
ORF1ab/nsp1331Y31YtaCtaT22AY.340.000194
ORF1ab/nsp1331Y31YtaCtaT22AY.370.000632
ORF1ab/nsp1331Y31del2TAc--c12AY.430.000004
ORF1ab/nsp1331Y31del2tACt--12AY.430.000004
ORF1ab/nsp1331Y31YtaCtaT22AY.5.30.000675
ORF1ab/nsp1331Y31YtaCtaT22AY.570.001312
ORF1ab/nsp1331Y31YtaCtaT22AY.630.000774
ORF1ab/nsp1331Y31YtaCtaT22AY.680.000547
ORF1ab/nsp1331Y31YtaCtaT22AY.730.001331
ORF1ab/nsp1331Y31YtaCtaT22AY.840.000875
ORF1ab/nsp1331Y31YtaCtaT22AY.950.001522
ORF1ab/nsp1331Y31YtaCtaT22B0.000256
ORF1ab/nsp1331Y31delTAC---22B.1.10.000036
ORF1ab/nsp1331Y31YtaCtaT22B.1.1.1330.016949
ORF1ab/nsp1331Y31YtaCtaT22B.1.1.1940.009901
ORF1ab/nsp1331Y31YtaCtaT22B.1.1.2040.006079
ORF1ab/nsp1331Y31YtaCtaT22B.1.1.3480.001592
ORF1ab/nsp1331Y31YtaCtaT22B.1.1.390.001019
ORF1ab/nsp1331Y31CtActGc22B.1.1.390.001019
ORF1ab/nsp1331Y31YtaCtaT22B.1.1.5070.017391
ORF1ab/nsp1331Y31YtaCtaT22B.1.1.630.000772
ORF1ab/nsp1331Y31del2TAc--c12B.1.1.70.000001
ORF1ab/nsp1331Y31del2tACt--12B.1.1.70.000001
ORF1ab/nsp1331Y31YtaCtaT22B.1.1460.008475
ORF1ab/nsp1331Y31YtaCtaT22B.1.1470.001512
ORF1ab/nsp1331Y31YtaCtaT22B.1.160.300.005952
ORF1ab/nsp1331Y31YtaCtaT22B.1.177.600.000437
ORF1ab/nsp1331Y31YtaCtaT22B.1.258.170.000208
ORF1ab/nsp1331Y31YtaCtaT22B.1.3050.004301
ORF1ab/nsp1331Y31YtaCtaT22B.1.351.30.001753
ORF1ab/nsp1331Y31YtaCtaT22B.1.3970.009709
ORF1ab/nsp1331Y31YtaCtaT22B.1.4280.002041
ORF1ab/nsp1331Y31YtaCtaT22B.1.438.10.000215
ORF1ab/nsp1331Y31YtaCtaT22B.1.5250.000226
ORF1ab/nsp1331Y31YtaCtaT22B.1.5400.019417
ORF1ab/nsp1331Y31YtaCtaT22B.1.5510.002581
ORF1ab/nsp1331Y31YtaCtaT22B.1.5800.00813
ORF1ab/nsp1331Y31YtaCtaT22B.1.617.10.000258
ORF1ab/nsp1331Y31del1tAct-c12B.1.617.20.000004
ORF1ab/nsp1331Y31del1taCta-12B.1.617.20.000004
ORF1ab/nsp1331Y31YtaCtaT22B.1.621.10.001012
ORF1ab/nsp1331Y31YtaCtaT22C.37.10.005236
ORF1ab/nsp1331Y31YtaCtaT22P.1.70.000639
ORF1ab/nsp1331Y31YtaCtaT22R.10.00018
ORF1ab/nsp1331Y31LtACtTG110.055556
ORF1ab/nsp1331Y31FtActTc110.055556
ORF1ab/nsp1331Y31ETaCGaG110.055556
ORF1ab/nsp1331Y31DTacGac110.055556
ORF1ab/nsp1331Y31YtaCtaT11A0.000387
ORF1ab/nsp1331Y31YtaCtaT11A.190.009434
ORF1ab/nsp1331Y31del1taCta-11A.20.000662
ORF1ab/nsp1331Y31YtaCtaT11A.2.5.10.004808
ORF1ab/nsp1331Y31LtACtTG11All0
ORF1ab/nsp1331Y31GTACGGT11All0
ORF1ab/nsp1331Y31ETaCGaG11All0
ORF1ab/nsp1331Y31YtaCtaT11AT.10.005128
ORF1ab/nsp1331Y31YtaCtaT11AY.10.000396
ORF1ab/nsp1331Y31HTacCac11AY.1010.00049
ORF1ab/nsp1331Y31YtaCtaT11AY.1010.00049
ORF1ab/nsp1331Y31CtActGc11AY.1030.000006
ORF1ab/nsp1331Y31DTacGac11AY.1130.000142
ORF1ab/nsp1331Y31YtaCtaT11AY.1130.000142
ORF1ab/nsp1331Y31FtActTc11AY.1170.000085
ORF1ab/nsp1331Y31NTacAac11AY.200.000039
ORF1ab/nsp1331Y31YtaCtaT11AY.240.000431
ORF1ab/nsp1331Y31XtaCtaA11AY.250.000006
ORF1ab/nsp1331Y31HTacCac11AY.250.000006
ORF1ab/nsp1331Y31del2tACt--11AY.250.000006
ORF1ab/nsp1331Y31YtaCtaT11AY.270.000065
ORF1ab/nsp1331Y31YtaCtaT11AY.29.10.000221
ORF1ab/nsp1331Y31GTACGGT11AY.30.00001
ORF1ab/nsp1331Y31CtActGc11AY.390.000025
ORF1ab/nsp1331Y31YtaCtaT11AY.4.10.000737
ORF1ab/nsp1331Y31CtActGc11AY.430.000004
ORF1ab/nsp1331Y31HTacCac11AY.440.000006
ORF1ab/nsp1331Y31CtActGc11AY.450.000122
ORF1ab/nsp1331Y31YtaCtaT11AY.46.10.001027
ORF1ab/nsp1331Y31YtaCtaT11AY.46.30.000934
ORF1ab/nsp1331Y31YtaCtaT11AY.46.50.000198
ORF1ab/nsp1331Y31HTacCac11AY.50.000021
ORF1ab/nsp1331Y31YtaCtaT11AY.530.000288
ORF1ab/nsp1331Y31YtaCtaT11AY.550.000917
ORF1ab/nsp1331Y31delTAC---11AY.670.000464
ORF1ab/nsp1331Y31YtaCtaT11AY.70.000196
ORF1ab/nsp1331Y31YtaCtaT11AY.7.10.000113
ORF1ab/nsp1331Y31YtaCtaT11AY.720.001361
ORF1ab/nsp1331Y31delTAC---11AY.750.000056
ORF1ab/nsp1331Y31YtaCtaT11AY.760.004831
ORF1ab/nsp1331Y31YtaCtaT11AY.890.004902
ORF1ab/nsp1331Y31CtACtGT11AY.920.000287
ORF1ab/nsp1331Y31StActCc11AY.98.10.000048
ORF1ab/nsp1331Y31delTAC---11AY.990.001049
ORF1ab/nsp1331Y31YtaCtaT11AY.990.001049
ORF1ab/nsp1331Y31HTacCac11B.10.000009
ORF1ab/nsp1331Y31DTacGac11B.10.000009
ORF1ab/nsp1331Y31FtActTc11B.1.10.000018
ORF1ab/nsp1331Y31StActCc11B.1.10.000018
ORF1ab/nsp1331Y31CtActGc11B.1.10.000018
ORF1ab/nsp1331Y31HTacCac11B.1.10.000018
ORF1ab/nsp1331Y31XtaCtaA11B.1.1.10.000327
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.10.000327
ORF1ab/nsp1331Y31HTacCac11B.1.1.10.000327
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.140.017241
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.1410.002012
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.1530.001095
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2070.001182
ORF1ab/nsp1331Y31HTacCac11B.1.1.2190.005
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2240.014286
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2250.007194
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2260.005814
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2360.006897
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2400.004695
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2420.043478
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2440.015385
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.2840.000107
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp1331Y31delTAC---11B.1.1.3110.000358
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.3160.000925
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.3260.001761
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.3350.012987
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.370.000193
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.3720.000689
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.4060.006494
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.4090.002833
ORF1ab/nsp1331Y31XtaCtaG11B.1.1.4110.014706
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.4200.001006
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.500.000679
ORF1ab/nsp1331Y31CtActGc11B.1.1.5190.00004
ORF1ab/nsp1331Y31YtaCtaT11B.1.1.700.000341
ORF1ab/nsp1331Y31YtaCtaT11B.1.1390.000733
ORF1ab/nsp1331Y31FtActTc11B.1.1600.000031
ORF1ab/nsp1331Y31FtActTc11B.1.1770.000013
ORF1ab/nsp1331Y31CtActGc11B.1.177.150.000631
ORF1ab/nsp1331Y31FtActTc11B.1.177.40.000211
ORF1ab/nsp1331Y31YtaCtaT11B.1.177.440.000519
ORF1ab/nsp1331Y31YtaCtaT11B.1.177.510.004566
ORF1ab/nsp1331Y31HTacCac11B.1.177.570.000281
ORF1ab/nsp1331Y31delTAC---11B.1.177.620.001192
ORF1ab/nsp1331Y31delTAC---11B.1.177.680.015152
ORF1ab/nsp1331Y31delTAC---11B.1.177.70.000165
ORF1ab/nsp1331Y31delTAC---11B.1.177.730.000566
ORF1ab/nsp1331Y31YtaCtaT11B.1.177.830.001481
ORF1ab/nsp1331Y31delTAC---11B.1.20.000009
ORF1ab/nsp1331Y31HTacCac11B.1.20.000009
ORF1ab/nsp1331Y31YtaCtaT11B.1.2140.003663
ORF1ab/nsp1331Y31HTacCac11B.1.2140.003663
ORF1ab/nsp1331Y31YtaCtaT11B.1.2350.002519
ORF1ab/nsp1331Y31YtaCtaT11B.1.2410.000812
ORF1ab/nsp1331Y31YtaCtaT11B.1.243.10.022222
ORF1ab/nsp1331Y31YtaCtaT11B.1.258.70.001912
ORF1ab/nsp1331Y31YtaCtaT11B.1.2980.002114
ORF1ab/nsp1331Y31YtaCtaT11B.1.3060.005714
ORF1ab/nsp1331Y31YtaCtaT11B.1.36.180.00042
ORF1ab/nsp1331Y31YtaCtaT11B.1.36.190.009259
ORF1ab/nsp1331Y31YtaCtaT11B.1.36.220.001208
ORF1ab/nsp1331Y31YtaCtaT11B.1.36.290.000517
ORF1ab/nsp1331Y31YtaCtaT11B.1.3820.008929
ORF1ab/nsp1331Y31YtaCtaT11B.1.3900.010638
ORF1ab/nsp1331Y31YtaCtaT11B.1.3960.000706
ORF1ab/nsp1331Y31delTAC---11B.1.416.10.001563
ORF1ab/nsp1331Y31NTacAac11B.1.438.10.000107
ORF1ab/nsp1331Y31YtaCtaT11B.1.466.20.000391
ORF1ab/nsp1331Y31YtaCtaT11B.1.4990.00105
ORF1ab/nsp1331Y31YtaCtaT11B.1.5170.000427
ORF1ab/nsp1331Y31YtaCtaT11B.1.5230.002451
ORF1ab/nsp1331Y31YtaCtaT11B.1.5500.013699
ORF1ab/nsp1331Y31YtaCtaT11B.1.5650.00081
ORF1ab/nsp1331Y31YtaCtaT11B.1.5670.003333
ORF1ab/nsp1331Y31YtaCtaT11B.1.5820.000491
ORF1ab/nsp1331Y31YtaCtaT11B.1.5900.004545
ORF1ab/nsp1331Y31YtaCtaT11B.1.6090.000479
ORF1ab/nsp1331Y31XtaCtaG11B.1.6090.000479
ORF1ab/nsp1331Y31YtaCtaT11B.1.6120.002653
ORF1ab/nsp1331Y31del2tACt--11B.1.617.20.000004
ORF1ab/nsp1331Y31delTAC---11B.1.617.30.002985
ORF1ab/nsp1331Y31HTacCac11B.1.621.10.000506
ORF1ab/nsp1331Y31NTacAac11B.1.6280.000352
ORF1ab/nsp1331Y31YtaCtaT11B.310.003731
ORF1ab/nsp1331Y31YtaCtaT11B.550.00295
ORF1ab/nsp1331Y31YtaCtaT11C.160.00106
ORF1ab/nsp1331Y31delTAC---11C.170.055556
ORF1ab/nsp1331Y31YtaCtaT11C.360.000911
ORF1ab/nsp1331Y31YtaCtaT11C.36.30.000567
ORF1ab/nsp1331Y31HTacCac11D.20.000075
ORF1ab/nsp1331Y31YtaCtaT11P.1.110.010204
ORF1ab/nsp1331Y31YtaCtaT11P.1.130.000898
ORF1ab/nsp1331Y31YtaCtaT11P.1.150.000232
ORF1ab/nsp1331Y31YtaCtaT11P.1.170.000162
ORF1ab/nsp1331Y31YtaCtaT11P.1.20.001156
ORF1ab/nsp1331Y31YtaCtaT11P.30.001595
ORF1ab/nsp1331Y31delTAC---11Q.20.000613
ORF1ab/nsp1331Y31YtaCtaT11Q.40.000455