CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 305

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13305V305VV5629VsyngtGgtA6955420.77985617149-17151
ORF1ab/nsp13305V305VV5629VsyngtGgtT6951380.19856117149-17151
ORF1ab/nsp13305V305VV5629VsyngtGgtC695150.021582717149-17151
ORF1ab/nsp13305V305LV5629LnonsynGtgTtg1551020.65806517149-17151
ORF1ab/nsp13305V305LV5629LnonsynGtGTtA155170.10967717149-17151
ORF1ab/nsp13305V305LV5629LnonsynGtGCtA155160.10322617149-17151
ORF1ab/nsp13305V305LV5629LnonsynGtGCtT155160.10322617149-17151
ORF1ab/nsp13305V305LV5629LnonsynGtgCtg15530.019354817149-17151
ORF1ab/nsp13305V305LV5629LnonsynGtGCtC15510.0064516117149-17151
ORF1ab/nsp13305V305AV5629AnonsyngTggCg1381280.92753617149-17151
ORF1ab/nsp13305V305AV5629AnonsyngTGgCA13860.043478317149-17151
ORF1ab/nsp13305V305AV5629AnonsyngTGgCT13830.021739117149-17151
ORF1ab/nsp13305V305AV5629AnonsyngTGgCC13810.0072463817149-17151
ORF1ab/nsp13305V305MV5629MnonsynGtgAtg129129117149-17151
ORF1ab/nsp13305V305IV5629InonsynGtGAtA69360.52173917149-17151
ORF1ab/nsp13305V305IV5629InonsynGtGAtT69330.47826117149-17151
ORF1ab/nsp13305V305KV5629KnonsynGTGAAA33300.90909117149-17151
ORF1ab/nsp13305V305KV5629KnonsynGTgAAg3330.090909117149-17151
ORF1ab/nsp13305V305NV5629NnonsynGTGAAT29280.96551717149-17151
ORF1ab/nsp13305V305NV5629NnonsynGTGAAC2910.034482817149-17151
ORF1ab/nsp13305V305RV5629RnonsynGTGAGA26160.61538517149-17151
ORF1ab/nsp13305V305XV5629XnonsynGTGTAA26150.57692317149-17151
ORF1ab/nsp13305V305XV5629XnonsynGTGTGA2690.34615417149-17151
ORF1ab/nsp13305V305RV5629RnonsynGTgAGg2640.15384617149-17151
ORF1ab/nsp13305V305RV5629RnonsynGTGCGT2630.11538517149-17151
ORF1ab/nsp13305V305RV5629RnonsynGTGCGA2630.11538517149-17151
ORF1ab/nsp13305V305XV5629XnonsynGTgTAg2620.076923117149-17151
ORF1ab/nsp13305V305SV5629SnonsynGTGAGT22150.68181817149-17151
ORF1ab/nsp13305V305SV5629SnonsynGTGTCA2230.13636417149-17151
ORF1ab/nsp13305V305SV5629SnonsynGTGTCT2220.090909117149-17151
ORF1ab/nsp13305V305SV5629SnonsynGTGTCC2210.045454517149-17151
ORF1ab/nsp13305V305SV5629SnonsynGTGAGC2210.045454517149-17151
ORF1ab/nsp13305V305TV5629TnonsynGTGACA1790.52941217149-17151
ORF1ab/nsp13305V305TV5629TnonsynGTGACT1780.47058817149-17151
ORF1ab/nsp13305V305YV5629YnonsynGTGTAT15140.93333317149-17151
ORF1ab/nsp13305V305YV5629YnonsynGTGTAC1510.066666717149-17151
ORF1ab/nsp13305V305FV5629FnonsynGtGTtT1414117149-17151
ORF1ab/nsp13305V305HV5629HnonsynGTGCAT1313117149-17151
ORF1ab/nsp13305V305QV5629QnonsynGTGCAA1313117149-17151
ORF1ab/nsp13305V305PV5629PnonsynGTGCCT1250.41666717149-17151
ORF1ab/nsp13305V305PV5629PnonsynGTGCCA1250.41666717149-17151
ORF1ab/nsp13305V305PV5629PnonsynGTgCCg1210.083333317149-17151
ORF1ab/nsp13305V305PV5629PnonsynGTGCCC1210.083333317149-17151
ORF1ab/nsp13305V305EV5629EnonsyngTGgAA1170.63636417149-17151
ORF1ab/nsp13305V305EV5629EnonsyngTggAg1140.36363617149-17151
ORF1ab/nsp13305V305CV5629CnonsynGTGTGT1090.917149-17151
ORF1ab/nsp13305V305CV5629CnonsynGTGTGC1010.117149-17151
ORF1ab/nsp13305V305GV5629GnonsyngTggGg940.44444417149-17151
ORF1ab/nsp13305V305GV5629GnonsyngTGgGA930.33333317149-17151
ORF1ab/nsp13305V305GV5629GnonsyngTGgGT920.22222217149-17151
ORF1ab/nsp13305V305delV5629deldelGTG---88117149-17151
ORF1ab/nsp13305V305DV5629DnonsyngTGgAT66117149-17151
ORF1ab/nsp13305V305WV5629WnonsynGTgTGg22117149-17151
ORF1ab/nsp13305V305del1V5629del1delgTgg-g11117149-17151

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13305V305VgtGgtA542695All0.000104
ORF1ab/nsp13305V305VgtGgtT138695All0.000026
ORF1ab/nsp13305V305VgtGgtC15695All0.000003
ORF1ab/nsp13305V305VgtGgtA149160B.1.1.70.000133
ORF1ab/nsp13305V305VgtGgtT11160B.1.1.70.00001
ORF1ab/nsp13305V305LGtgTtg102155All0.00002
ORF1ab/nsp13305V305LGtGTtA17155All0.000003
ORF1ab/nsp13305V305LGtGCtT16155All0.000003
ORF1ab/nsp13305V305LGtGCtA16155All0.000003
ORF1ab/nsp13305V305LGtgCtg3155All0.000001
ORF1ab/nsp13305V305LGtGCtC1155All0
ORF1ab/nsp13305V305AgTggCg128138All0.000024
ORF1ab/nsp13305V305AgTGgCA6138All0.000001
ORF1ab/nsp13305V305AgTGgCT3138All0.000001
ORF1ab/nsp13305V305AgTGgCC1138All0
ORF1ab/nsp13305V305MGtgAtg129129All0.000025
ORF1ab/nsp13305V305VgtGgtA116117B.1.10.002104
ORF1ab/nsp13305V305VgtGgtC1117B.1.10.000018
ORF1ab/nsp13305V305VgtGgtA102102AY.5.20.251232
ORF1ab/nsp13305V305IGtGAtA3669All0.000007
ORF1ab/nsp13305V305IGtGAtT3369All0.000006
ORF1ab/nsp13305V305IGtGAtA3465B.1.1.70.00003
ORF1ab/nsp13305V305IGtGAtT3165B.1.1.70.000028
ORF1ab/nsp13305V305MGtgAtg6464B.1.1.70.000057
ORF1ab/nsp13305V305VgtGgtT6363B.1.4320.707865
ORF1ab/nsp13305V305LGtGTtA1656B.1.1.70.000014
ORF1ab/nsp13305V305LGtGCtT1456B.1.1.70.000013
ORF1ab/nsp13305V305LGtGCtA1456B.1.1.70.000013
ORF1ab/nsp13305V305LGtgTtg1256B.1.1.70.000011
ORF1ab/nsp13305V305AgTggCg5555AY.440.000335
ORF1ab/nsp13305V305KGTGAAA3033All0.000006
ORF1ab/nsp13305V305KGTgAAg333All0.000001
ORF1ab/nsp13305V305LGtgTtg3333B.1.4290.000776
ORF1ab/nsp13305V305VgtGgtA2831AY.40.000044
ORF1ab/nsp13305V305VgtGgtT331AY.40.000005
ORF1ab/nsp13305V305KGTGAAA2831B.1.1.70.000025
ORF1ab/nsp13305V305KGTgAAg331B.1.1.70.000003
ORF1ab/nsp13305V305AgTggCg3030AY.40.000047
ORF1ab/nsp13305V305NGTGAAT2829All0.000005
ORF1ab/nsp13305V305NGTGAAC129All0
ORF1ab/nsp13305V305NGTGAAT2627B.1.1.70.000023
ORF1ab/nsp13305V305NGTGAAC127B.1.1.70.000001
ORF1ab/nsp13305V305RGTGAGA1626All0.000003
ORF1ab/nsp13305V305XGTGTAA1526All0.000003
ORF1ab/nsp13305V305XGTGTGA926All0.000002
ORF1ab/nsp13305V305RGTgAGg426All0.000001
ORF1ab/nsp13305V305RGTGCGT326All0.000001
ORF1ab/nsp13305V305RGTGCGA326All0.000001
ORF1ab/nsp13305V305XGTgTAg226All0
ORF1ab/nsp13305V305RGTGAGA1626B.1.1.70.000014
ORF1ab/nsp13305V305XGTGTAA1526B.1.1.70.000013
ORF1ab/nsp13305V305XGTGTGA926B.1.1.70.000008
ORF1ab/nsp13305V305RGTgAGg426B.1.1.70.000004
ORF1ab/nsp13305V305RGTGCGA326B.1.1.70.000003
ORF1ab/nsp13305V305RGTGCGT326B.1.1.70.000003
ORF1ab/nsp13305V305XGTgTAg226B.1.1.70.000002
ORF1ab/nsp13305V305SGTGAGT1522All0.000003
ORF1ab/nsp13305V305SGTGTCA322All0.000001
ORF1ab/nsp13305V305SGTGTCT222All0
ORF1ab/nsp13305V305SGTGAGC122All0
ORF1ab/nsp13305V305SGTGTCC122All0
ORF1ab/nsp13305V305VgtGgtT1122B.10.000101
ORF1ab/nsp13305V305VgtGgtC622B.10.000055
ORF1ab/nsp13305V305VgtGgtA522B.10.000046
ORF1ab/nsp13305V305SGTGAGT1521B.1.1.70.000013
ORF1ab/nsp13305V305SGTGTCA321B.1.1.70.000003
ORF1ab/nsp13305V305SGTGTCT221B.1.1.70.000002
ORF1ab/nsp13305V305SGTGAGC121B.1.1.70.000001
ORF1ab/nsp13305V305VgtGgtT1220AY.440.000073
ORF1ab/nsp13305V305VgtGgtA820AY.440.000049
ORF1ab/nsp13305V305TGTGACA917All0.000002
ORF1ab/nsp13305V305TGTGACT817All0.000002
ORF1ab/nsp13305V305TGTGACA917B.1.1.70.000008
ORF1ab/nsp13305V305TGTGACT817B.1.1.70.000007
ORF1ab/nsp13305V305YGTGTAT1415All0.000003
ORF1ab/nsp13305V305YGTGTAC115All0
ORF1ab/nsp13305V305YGTGTAT1415B.1.1.70.000013
ORF1ab/nsp13305V305YGTGTAC115B.1.1.70.000001
ORF1ab/nsp13305V305FGtGTtT1414All0.000003
ORF1ab/nsp13305V305FGtGTtT1414B.1.1.70.000013
ORF1ab/nsp13305V305QGTGCAA1313All0.000002
ORF1ab/nsp13305V305HGTGCAT1313All0.000002
ORF1ab/nsp13305V305PGTGCCT512All0.000001
ORF1ab/nsp13305V305PGTGCCA512All0.000001
ORF1ab/nsp13305V305PGTGCCC112All0
ORF1ab/nsp13305V305PGTgCCg112All0
ORF1ab/nsp13305V305VgtGgtA1212AY.200.000466
ORF1ab/nsp13305V305AgTggCg612B.1.1.70.000005
ORF1ab/nsp13305V305AgTGgCT312B.1.1.70.000003
ORF1ab/nsp13305V305AgTGgCA312B.1.1.70.000003
ORF1ab/nsp13305V305VgtGgtT1212B.1.3490.008578
ORF1ab/nsp13305V305VgtGgtA712B.1.617.20.000026
ORF1ab/nsp13305V305VgtGgtT512B.1.617.20.000019
ORF1ab/nsp13305V305EgTGgAA711All0.000001
ORF1ab/nsp13305V305EgTggAg411All0.000001
ORF1ab/nsp13305V305MGtgAtg1111AY.46.20.006989
ORF1ab/nsp13305V305QGTGCAA1111B.1.1.70.00001
ORF1ab/nsp13305V305HGTGCAT1111B.1.1.70.00001
ORF1ab/nsp13305V305CGTGTGT910All0.000002
ORF1ab/nsp13305V305CGTGTGC110All0
ORF1ab/nsp13305V305CGTGTGT910B.1.1.70.000008
ORF1ab/nsp13305V305PGTGCCT510B.1.1.70.000004
ORF1ab/nsp13305V305PGTGCCA510B.1.1.70.000004
ORF1ab/nsp13305V305CGTGTGC110B.1.1.70.000001
ORF1ab/nsp13305V305GgTggGg49All0.000001
ORF1ab/nsp13305V305GgTGgGA39All0.000001
ORF1ab/nsp13305V305GgTGgGT29All0
ORF1ab/nsp13305V305VgtGgtA99AY.250.000054
ORF1ab/nsp13305V305VgtGgtA99AY.98.10.000436
ORF1ab/nsp13305V305delGTG---88All0.000002
ORF1ab/nsp13305V305MGtgAtg88AY.40.000012
ORF1ab/nsp13305V305VgtGgtA88AY.7.10.000902
ORF1ab/nsp13305V305EgTGgAA78B.1.1.70.000006
ORF1ab/nsp13305V305EgTggAg18B.1.1.70.000001
ORF1ab/nsp13305V305GgTGgGA37B.1.1.70.000003
ORF1ab/nsp13305V305GgTGgGT27B.1.1.70.000002
ORF1ab/nsp13305V305GgTggGg27B.1.1.70.000002
ORF1ab/nsp13305V305AgTggCg77B.1.20.000062
ORF1ab/nsp13305V305DgTGgAT66All0.000001
ORF1ab/nsp13305V305LGtgTtg66AY.1030.000037
ORF1ab/nsp13305V305AgTggCg66AY.160.002278
ORF1ab/nsp13305V305LGtgTtg66B.10.000055
ORF1ab/nsp13305V305DgTGgAT66B.1.1.70.000005
ORF1ab/nsp13305V305VgtGgtA66B.1.177.70.000989
ORF1ab/nsp13305V305VgtGgtT36B.1.20.000026
ORF1ab/nsp13305V305VgtGgtA36B.1.20.000026
ORF1ab/nsp13305V305LGtgTtg66B.1.617.20.000023
ORF1ab/nsp13305V305VgtGgtA55AY.1030.000031
ORF1ab/nsp13305V305MGtgAtg55AY.250.00003
ORF1ab/nsp13305V305LGtgTtg55AY.430.000022
ORF1ab/nsp13305V305VgtGgtA45AY.430.000018
ORF1ab/nsp13305V305VgtGgtT15AY.430.000004
ORF1ab/nsp13305V305MGtgAtg55B.1.1.5190.000199
ORF1ab/nsp13305V305VgtGgtA55B.1.1.5190.000199
ORF1ab/nsp13305V305VgtGgtA55B.1.1.610.04386
ORF1ab/nsp13305V305MGtgAtg44AY.390.000099
ORF1ab/nsp13305V305LGtgTtg44AY.40.000006
ORF1ab/nsp13305V305LGtgTtg34AY.440.000018
ORF1ab/nsp13305V305LGtGTtA14AY.440.000006
ORF1ab/nsp13305V305VgtGgtA34AY.50.000062
ORF1ab/nsp13305V305VgtGgtT14AY.50.000021
ORF1ab/nsp13305V305MGtgAtg44B.1.3140.030075
ORF1ab/nsp13305V305MGtgAtg44B.1.617.20.000015
ORF1ab/nsp13305V305AgTggCg33AY.250.000018
ORF1ab/nsp13305V305VgtGgtA33AY.260.000085
ORF1ab/nsp13305V305AgTggCg33AY.34.10.00153
ORF1ab/nsp13305V305VgtGgtA33AY.4.20.000065
ORF1ab/nsp13305V305VgtGgtA23AY.920.000575
ORF1ab/nsp13305V305VgtGgtC13AY.920.000287
ORF1ab/nsp13305V305VgtGgtA33AY.99.20.000276
ORF1ab/nsp13305V305MGtgAtg33B.10.000027
ORF1ab/nsp13305V305VgtGgtA33B.1.1.3760.017857
ORF1ab/nsp13305V305LGtgTtg33B.1.20.000026
ORF1ab/nsp13305V305WGTgTGg22All0
ORF1ab/nsp13305V305VgtGgtA22AY.1010.000981
ORF1ab/nsp13305V305LGtGCtA12AY.250.000006
ORF1ab/nsp13305V305LGtGCtT12AY.250.000006
ORF1ab/nsp13305V305IGtGAtA12AY.250.000006
ORF1ab/nsp13305V305IGtGAtT12AY.250.000006
ORF1ab/nsp13305V305LGtgTtg22AY.30.00002
ORF1ab/nsp13305V305VgtGgtA22AY.390.000049
ORF1ab/nsp13305V305VgtGgtA22AY.4.40.000818
ORF1ab/nsp13305V305LGtgTtg22AY.450.000243
ORF1ab/nsp13305V305VgtGgtT22AY.9.20.000073
ORF1ab/nsp13305V305AgTGgCC12AY.920.000287
ORF1ab/nsp13305V305LGtgCtg12AY.920.000287
ORF1ab/nsp13305V305LGtGCtC12AY.920.000287
ORF1ab/nsp13305V305AgTggCg12AY.920.000287
ORF1ab/nsp13305V305PGTgCCg12AY.920.000287
ORF1ab/nsp13305V305PGTGCCC12AY.920.000287
ORF1ab/nsp13305V305LGtgTtg22B.1.10.000036
ORF1ab/nsp13305V305VgtGgtA22B.1.1.1610.007067
ORF1ab/nsp13305V305VgtGgtA22B.1.1.1740.006757
ORF1ab/nsp13305V305VgtGgtA22B.1.1.2160.001781
ORF1ab/nsp13305V305AgTggCg22B.1.1.3070.005063
ORF1ab/nsp13305V305VgtGgtA22B.1.1.330.000842
ORF1ab/nsp13305V305LGtgTtg22B.1.1.330.000842
ORF1ab/nsp13305V305WGTgTGg22B.1.1.70.000002
ORF1ab/nsp13305V305delGTG---22B.1.1.70.000002
ORF1ab/nsp13305V305VgtGgtA12B.1.1600.000031
ORF1ab/nsp13305V305VgtGgtT12B.1.1600.000031
ORF1ab/nsp13305V305VgtGgtA22B.1.160.120.012821
ORF1ab/nsp13305V305AgTggCg22B.1.1620.01005
ORF1ab/nsp13305V305MGtgAtg22B.1.20.000018
ORF1ab/nsp13305V305VgtGgtC22B.1.2350.005038
ORF1ab/nsp13305V305VgtGgtA22B.1.258.220.005333
ORF1ab/nsp13305V305VgtGgtC12B.1.3980.002976
ORF1ab/nsp13305V305VgtGgtA12B.1.3980.002976
ORF1ab/nsp13305V305VgtGgtA22B.1.4160.002538
ORF1ab/nsp13305V305MGtgAtg22B.1.5260.000047
ORF1ab/nsp13305V305VgtGgtC22B.1.5820.000981
ORF1ab/nsp13305V305AgTggCg22B.1.617.20.000008
ORF1ab/nsp13305V305MGtgAtg22B.1.6370.000146
ORF1ab/nsp13305V305MGtgAtg22P.10.000032
ORF1ab/nsp13305V305LGtGCtT12P.10.000016
ORF1ab/nsp13305V305LGtGCtA12P.10.000016
ORF1ab/nsp13305V305IGtGAtT12P.10.000016
ORF1ab/nsp13305V305IGtGAtA12P.10.000016
ORF1ab/nsp13305V305del1gTgg-g11All0
ORF1ab/nsp13305V305VgtGgtA11AY.1020.000027
ORF1ab/nsp13305V305MGtgAtg11AY.1030.000006
ORF1ab/nsp13305V305AgTggCg11AY.1030.000006
ORF1ab/nsp13305V305VgtGgtT11AY.1100.000113
ORF1ab/nsp13305V305MGtgAtg11AY.1130.000142
ORF1ab/nsp13305V305MGtgAtg11AY.1170.000085
ORF1ab/nsp13305V305VgtGgtA11AY.1180.000063
ORF1ab/nsp13305V305LGtgTtg11AY.1190.000035
ORF1ab/nsp13305V305VgtGgtA11AY.120.000316
ORF1ab/nsp13305V305VgtGgtA11AY.1200.000037
ORF1ab/nsp13305V305GgTggGg11AY.130.000161
ORF1ab/nsp13305V305LGtgTtg11AY.200.000039
ORF1ab/nsp13305V305HGTGCAT11AY.250.000006
ORF1ab/nsp13305V305QGTGCAA11AY.250.000006
ORF1ab/nsp13305V305NGTGAAT11AY.250.000006
ORF1ab/nsp13305V305KGTGAAA11AY.250.000006
ORF1ab/nsp13305V305MGtgAtg11AY.260.000028
ORF1ab/nsp13305V305MGtgAtg11AY.290.000016
ORF1ab/nsp13305V305LGtgTtg11AY.290.000016
ORF1ab/nsp13305V305VgtGgtA11AY.30.00001
ORF1ab/nsp13305V305VgtGgtA11AY.3.10.000085
ORF1ab/nsp13305V305LGtgTtg11AY.390.000025
ORF1ab/nsp13305V305MGtgAtg11AY.4.30.000842
ORF1ab/nsp13305V305VgtGgtA11AY.410.000294
ORF1ab/nsp13305V305VgtGgtA11AY.420.00004
ORF1ab/nsp13305V305AgTggCg11AY.420.00004
ORF1ab/nsp13305V305MGtgAtg11AY.420.00004
ORF1ab/nsp13305V305delGTG---11AY.430.000004
ORF1ab/nsp13305V305VgtGgtA11AY.460.000104
ORF1ab/nsp13305V305MGtgAtg11AY.46.40.000165
ORF1ab/nsp13305V305AgTggCg11AY.46.50.000198
ORF1ab/nsp13305V305AgTggCg11AY.46.60.000072
ORF1ab/nsp13305V305VgtGgtT11AY.46.60.000072
ORF1ab/nsp13305V305VgtGgtT11AY.470.000031
ORF1ab/nsp13305V305VgtGgtA11AY.480.000465
ORF1ab/nsp13305V305MGtgAtg11AY.50.000021
ORF1ab/nsp13305V305VgtGgtC11AY.5.30.000337
ORF1ab/nsp13305V305LGtgTtg11AY.580.000907
ORF1ab/nsp13305V305MGtgAtg11AY.60.000041
ORF1ab/nsp13305V305VgtGgtA11AY.650.000533
ORF1ab/nsp13305V305delGTG---11AY.75.10.00018
ORF1ab/nsp13305V305VgtGgtT11AY.820.001357
ORF1ab/nsp13305V305VgtGgtA11AY.840.000437
ORF1ab/nsp13305V305VgtGgtA11B0.000128
ORF1ab/nsp13305V305EgTggAg11B0.000128
ORF1ab/nsp13305V305delGTG---11B0.000128
ORF1ab/nsp13305V305EgTggAg11B.10.000009
ORF1ab/nsp13305V305AgTGgCA11B.10.000009
ORF1ab/nsp13305V305delGTG---11B.10.000009
ORF1ab/nsp13305V305MGtgAtg11B.1.10.000018
ORF1ab/nsp13305V305AgTGgCA11B.1.10.000018
ORF1ab/nsp13305V305del1gTgg-g11B.1.10.000018
ORF1ab/nsp13305V305AgTGgCA11B.1.1.280.000311
ORF1ab/nsp13305V305LGtgTtg11B.1.1.3010.001179
ORF1ab/nsp13305V305LGtgCtg11B.1.1.3060.000438
ORF1ab/nsp13305V305VgtGgtA11B.1.1.3060.000438
ORF1ab/nsp13305V305AgTggCg11B.1.1.3230.014085
ORF1ab/nsp13305V305VgtGgtA11B.1.1.3720.000689
ORF1ab/nsp13305V305VgtGgtA11B.1.1.5180.006329
ORF1ab/nsp13305V305AgTggCg11B.1.1390.000733
ORF1ab/nsp13305V305VgtGgtC11B.1.1670.007812
ORF1ab/nsp13305V305LGtgTtg11B.1.1770.000013
ORF1ab/nsp13305V305GgTggGg11B.1.20.000009
ORF1ab/nsp13305V305EgTggAg11B.1.20.000009
ORF1ab/nsp13305V305AgTggCg11B.1.2210.000071
ORF1ab/nsp13305V305VgtGgtT11B.1.2340.000132
ORF1ab/nsp13305V305VgtGgtA11B.1.2430.00007
ORF1ab/nsp13305V305MGtgAtg11B.1.2580.000067
ORF1ab/nsp13305V305LGtgTtg11B.1.2580.000067
ORF1ab/nsp13305V305LGtgCtg11B.1.3290.000608
ORF1ab/nsp13305V305VgtGgtT11B.1.3510.00003
ORF1ab/nsp13305V305LGtgTtg11B.1.3510.00003
ORF1ab/nsp13305V305MGtgAtg11B.1.3510.00003
ORF1ab/nsp13305V305LGtgTtg11B.1.351.20.000303
ORF1ab/nsp13305V305VgtGgtA11B.1.360.000146
ORF1ab/nsp13305V305VgtGgtT11B.1.36.370.002778
ORF1ab/nsp13305V305LGtgTtg11B.1.3620.001541
ORF1ab/nsp13305V305VgtGgtT11B.1.3960.000706
ORF1ab/nsp13305V305VgtGgtT11B.1.4000.000429
ORF1ab/nsp13305V305VgtGgtT11B.1.4240.008065
ORF1ab/nsp13305V305VgtGgtA11B.1.4290.000024
ORF1ab/nsp13305V305LGtgTtg11B.1.5610.000397
ORF1ab/nsp13305V305LGtgTtg11B.1.5760.000907
ORF1ab/nsp13305V305SGTGTCC11B.1.5820.000491
ORF1ab/nsp13305V305VgtGgtT11B.1.5960.000087
ORF1ab/nsp13305V305AgTggCg11B.1.617.10.000129
ORF1ab/nsp13305V305delGTG---11B.1.617.20.000004
ORF1ab/nsp13305V305VgtGgtT11B.1.6210.000089
ORF1ab/nsp13305V305VgtGgtA11B.1.6280.000352
ORF1ab/nsp13305V305VgtGgtA11C.140.004329
ORF1ab/nsp13305V305AgTggCg11D.20.000075
ORF1ab/nsp13305V305LGtgTtg11D.20.000075
ORF1ab/nsp13305V305NGTGAAT11P.10.000016
ORF1ab/nsp13305V305KGTGAAA11P.10.000016
ORF1ab/nsp13305V305delGTG---11P.10.000016
ORF1ab/nsp13305V305AgTggCg11P.10.000016
ORF1ab/nsp13305V305VgtGgtT11P.10.000016
ORF1ab/nsp13305V305HGTGCAT11P.10.000016
ORF1ab/nsp13305V305QGTGCAA11P.10.000016
ORF1ab/nsp13305V305LGtgTtg11P.1.120.000484
ORF1ab/nsp13305V305AgTggCg11P.1.170.000162
ORF1ab/nsp13305V305LGtgTtg11Q.30.000145
ORF1ab/nsp13305V305VgtGgtA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.