CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 303

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13303R303RR5627RsyncgCcgT5794510.77892917143-17145
ORF1ab/nsp13303R303RR5627RsyncgCcgA5791240.21416217143-17145
ORF1ab/nsp13303R303RR5627RsyncgCcgG57930.0051813517143-17145
ORF1ab/nsp13303R303RR5627RsynCgCAgG57910.0017271217143-17145
ORF1ab/nsp13303R303HR5627HnonsyncGccAc4734600.97251617143-17145
ORF1ab/nsp13303R303HR5627HnonsyncGCcAT473130.027484117143-17145
ORF1ab/nsp13303R303LR5627LnonsyncGccTc1221070.87704917143-17145
ORF1ab/nsp13303R303LR5627LnonsyncGCcTT12250.040983617143-17145
ORF1ab/nsp13303R303LR5627LnonsynCGCTTA12240.032786917143-17145
ORF1ab/nsp13303R303LR5627LnonsynCGCTTG12230.024590217143-17145
ORF1ab/nsp13303R303LR5627LnonsyncGCcTA12230.024590217143-17145
ORF1ab/nsp13303R303CR5627CnonsynCgcTgc98960.97959217143-17145
ORF1ab/nsp13303R303CR5627CnonsynCgCTgT9820.020408217143-17145
ORF1ab/nsp13303R303TR5627TnonsynCGCACT74320.43243217143-17145
ORF1ab/nsp13303R303TR5627TnonsynCGCACA74200.2702717143-17145
ORF1ab/nsp13303R303TR5627TnonsynCGcACc74190.25675717143-17145
ORF1ab/nsp13303R303TR5627TnonsynCGCACG7430.040540517143-17145
ORF1ab/nsp13303R303SR5627SnonsynCGCTCT57150.26315817143-17145
ORF1ab/nsp13303R303SR5627SnonsynCgcAgc57140.24561417143-17145
ORF1ab/nsp13303R303SR5627SnonsynCGcTCc57120.21052617143-17145
ORF1ab/nsp13303R303SR5627SnonsynCGCTCA57100.17543917143-17145
ORF1ab/nsp13303R303SR5627SnonsynCgCAgT5740.070175417143-17145
ORF1ab/nsp13303R303SR5627SnonsynCGCTCG5720.035087717143-17145
ORF1ab/nsp13303R303NR5627NnonsynCGCAAT50350.717143-17145
ORF1ab/nsp13303R303NR5627NnonsynCGcAAc50150.317143-17145
ORF1ab/nsp13303R303PR5627PnonsyncGCcCT35160.45714317143-17145
ORF1ab/nsp13303R303PR5627PnonsyncGCcCA35100.28571417143-17145
ORF1ab/nsp13303R303PR5627PnonsyncGccCc3580.22857117143-17145
ORF1ab/nsp13303R303PR5627PnonsyncGCcCG3510.028571417143-17145
ORF1ab/nsp13303R303YR5627YnonsynCGCTAT33210.63636417143-17145
ORF1ab/nsp13303R303YR5627YnonsynCGcTAc33120.36363617143-17145
ORF1ab/nsp13303R303KR5627KnonsynCGCAAA29230.79310317143-17145
ORF1ab/nsp13303R303KR5627KnonsynCGCAAG2960.20689717143-17145
ORF1ab/nsp13303R303IR5627InonsynCGCATT22110.517143-17145
ORF1ab/nsp13303R303IR5627InonsynCGCATA2270.31818217143-17145
ORF1ab/nsp13303R303IR5627InonsynCGcATc2240.18181817143-17145
ORF1ab/nsp13303R303XR5627XnonsynCGCTAA17120.70588217143-17145
ORF1ab/nsp13303R303XR5627XnonsynCGCTAG1750.29411817143-17145
ORF1ab/nsp13303R303QR5627QnonsyncGCcAA11100.90909117143-17145
ORF1ab/nsp13303R303QR5627QnonsyncGCcAG1110.090909117143-17145
ORF1ab/nsp13303R303delR5627deldelCGC---88117143-17145
ORF1ab/nsp13303R303FR5627FnonsynCGCTTT860.7517143-17145
ORF1ab/nsp13303R303FR5627FnonsynCGcTTc820.2517143-17145
ORF1ab/nsp13303R303GR5627GnonsynCgcGgc730.42857117143-17145
ORF1ab/nsp13303R303GR5627GnonsynCgCGgT730.42857117143-17145
ORF1ab/nsp13303R303GR5627GnonsynCgCGgA710.14285717143-17145
ORF1ab/nsp13303R303AR5627AnonsynCGcGCc630.517143-17145
ORF1ab/nsp13303R303AR5627AnonsynCGCGCT620.33333317143-17145
ORF1ab/nsp13303R303AR5627AnonsynCGCGCA610.16666717143-17145
ORF1ab/nsp13303R303MR5627MnonsynCGCATG33117143-17145
ORF1ab/nsp13303R303DR5627DnonsynCGCGAT210.517143-17145
ORF1ab/nsp13303R303DR5627DnonsynCGcGAc210.517143-17145
ORF1ab/nsp13303R303del1R5627del1delcGcc-c11117143-17145
ORF1ab/nsp13303R303WR5627WnonsynCgCTgG11117143-17145

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13303R303RcgCcgT451579All0.000086
ORF1ab/nsp13303R303RcgCcgA124579All0.000024
ORF1ab/nsp13303R303RcgCcgG3579All0.000001
ORF1ab/nsp13303R303RCgCAgG1579All0
ORF1ab/nsp13303R303HcGccAc460473All0.000088
ORF1ab/nsp13303R303HcGCcAT13473All0.000002
ORF1ab/nsp13303R303HcGccAc238249B.1.1.70.000213
ORF1ab/nsp13303R303HcGCcAT11249B.1.1.70.00001
ORF1ab/nsp13303R303RcgCcgA111138P.10.001749
ORF1ab/nsp13303R303RcgCcgT27138P.10.000425
ORF1ab/nsp13303R303LcGccTc107122All0.00002
ORF1ab/nsp13303R303LcGCcTT5122All0.000001
ORF1ab/nsp13303R303LCGCTTA4122All0.000001
ORF1ab/nsp13303R303LCGCTTG3122All0.000001
ORF1ab/nsp13303R303LcGCcTA3122All0.000001
ORF1ab/nsp13303R303CCgcTgc9698All0.000018
ORF1ab/nsp13303R303CCgCTgT298All0
ORF1ab/nsp13303R303TCGCACT3274All0.000006
ORF1ab/nsp13303R303TCGCACA2074All0.000004
ORF1ab/nsp13303R303TCGcACc1974All0.000004
ORF1ab/nsp13303R303TCGCACG374All0.000001
ORF1ab/nsp13303R303TCGCACT3172B.1.1.70.000028
ORF1ab/nsp13303R303TCGCACA2072B.1.1.70.000018
ORF1ab/nsp13303R303TCGcACc1872B.1.1.70.000016
ORF1ab/nsp13303R303TCGCACG372B.1.1.70.000003
ORF1ab/nsp13303R303RcgCcgT6969AY.1030.000428
ORF1ab/nsp13303R303RcgCcgT6969AY.40.000107
ORF1ab/nsp13303R303RcgCcgT6363B.1.4441
ORF1ab/nsp13303R303RcgCcgT5558B.1.1.70.000049
ORF1ab/nsp13303R303RCgCAgG158B.1.1.70.000001
ORF1ab/nsp13303R303RcgCcgG158B.1.1.70.000001
ORF1ab/nsp13303R303RcgCcgA158B.1.1.70.000001
ORF1ab/nsp13303R303SCGCTCT1557All0.000003
ORF1ab/nsp13303R303SCgcAgc1457All0.000003
ORF1ab/nsp13303R303SCGcTCc1257All0.000002
ORF1ab/nsp13303R303SCGCTCA1057All0.000002
ORF1ab/nsp13303R303SCgCAgT457All0.000001
ORF1ab/nsp13303R303SCGCTCG257All0
ORF1ab/nsp13303R303NCGCAAT3550All0.000007
ORF1ab/nsp13303R303NCGcAAc1550All0.000003
ORF1ab/nsp13303R303SCGCTCT1548B.1.1.70.000013
ORF1ab/nsp13303R303SCGcTCc1248B.1.1.70.000011
ORF1ab/nsp13303R303SCGCTCA1048B.1.1.70.000009
ORF1ab/nsp13303R303SCgcAgc548B.1.1.70.000004
ORF1ab/nsp13303R303SCgCAgT448B.1.1.70.000004
ORF1ab/nsp13303R303SCGCTCG248B.1.1.70.000002
ORF1ab/nsp13303R303NCGCAAT3347B.1.1.70.00003
ORF1ab/nsp13303R303NCGcAAc1447B.1.1.70.000013
ORF1ab/nsp13303R303RcgCcgT4343A.23.10.030282
ORF1ab/nsp13303R303PcGCcCT1635All0.000003
ORF1ab/nsp13303R303PcGCcCA1035All0.000002
ORF1ab/nsp13303R303PcGccCc835All0.000002
ORF1ab/nsp13303R303PcGCcCG135All0
ORF1ab/nsp13303R303HcGccAc3434B.1.2580.002263
ORF1ab/nsp13303R303HcGccAc3434B.1.6210.00301
ORF1ab/nsp13303R303YCGCTAT2133All0.000004
ORF1ab/nsp13303R303YCGcTAc1233All0.000002
ORF1ab/nsp13303R303YCGCTAT2133B.1.1.70.000019
ORF1ab/nsp13303R303LcGccTc2033B.1.1.70.000018
ORF1ab/nsp13303R303PcGCcCT1533B.1.1.70.000013
ORF1ab/nsp13303R303YCGcTAc1233B.1.1.70.000011
ORF1ab/nsp13303R303PcGCcCA1033B.1.1.70.000009
ORF1ab/nsp13303R303PcGccCc733B.1.1.70.000006
ORF1ab/nsp13303R303LcGCcTT433B.1.1.70.000004
ORF1ab/nsp13303R303LCGCTTA433B.1.1.70.000004
ORF1ab/nsp13303R303LCGCTTG333B.1.1.70.000003
ORF1ab/nsp13303R303LcGCcTA233B.1.1.70.000002
ORF1ab/nsp13303R303PcGCcCG133B.1.1.70.000001
ORF1ab/nsp13303R303CCgcTgc2931B.1.1.70.000026
ORF1ab/nsp13303R303CCgCTgT231B.1.1.70.000002
ORF1ab/nsp13303R303KCGCAAA2329All0.000004
ORF1ab/nsp13303R303KCGCAAG629All0.000001
ORF1ab/nsp13303R303KCGCAAA2228B.1.1.70.00002
ORF1ab/nsp13303R303KCGCAAG628B.1.1.70.000005
ORF1ab/nsp13303R303LcGccTc2727AY.1030.000168
ORF1ab/nsp13303R303ICGCATT1122All0.000002
ORF1ab/nsp13303R303ICGCATA722All0.000001
ORF1ab/nsp13303R303ICGcATc422All0.000001
ORF1ab/nsp13303R303ICGCATT1020B.1.1.70.000009
ORF1ab/nsp13303R303ICGCATA620B.1.1.70.000005
ORF1ab/nsp13303R303ICGcATc420B.1.1.70.000004
ORF1ab/nsp13303R303RcgCcgT1818B.1.214.20.010791
ORF1ab/nsp13303R303XCGCTAA1217All0.000002
ORF1ab/nsp13303R303XCGCTAG517All0.000001
ORF1ab/nsp13303R303HcGccAc1717B.1.1.3690.007586
ORF1ab/nsp13303R303XCGCTAA1217B.1.1.70.000011
ORF1ab/nsp13303R303XCGCTAG517B.1.1.70.000004
ORF1ab/nsp13303R303CCgcTgc1717B.1.1600.00053
ORF1ab/nsp13303R303HcGccAc1616AY.40.000025
ORF1ab/nsp13303R303LcGccTc1515AY.430.000066
ORF1ab/nsp13303R303HcGccAc1212B.1.20.000106
ORF1ab/nsp13303R303RcgCcgT1112B.1.617.20.000041
ORF1ab/nsp13303R303RcgCcgA112B.1.617.20.000004
ORF1ab/nsp13303R303QcGCcAA1011All0.000002
ORF1ab/nsp13303R303QcGCcAG111All0
ORF1ab/nsp13303R303CCgcTgc1111B.1.2580.000732
ORF1ab/nsp13303R303QcGCcAA910B.1.1.70.000008
ORF1ab/nsp13303R303QcGCcAG110B.1.1.70.000001
ORF1ab/nsp13303R303RcgCcgT99B.1.1770.000119
ORF1ab/nsp13303R303HcGccAc89P.10.000126
ORF1ab/nsp13303R303HcGCcAT19P.10.000016
ORF1ab/nsp13303R303delCGC---88All0.000002
ORF1ab/nsp13303R303FCGCTTT68All0.000001
ORF1ab/nsp13303R303FCGcTTc28All0
ORF1ab/nsp13303R303HcGccAc88AY.1030.00005
ORF1ab/nsp13303R303LcGccTc88AY.130.001288
ORF1ab/nsp13303R303HcGccAc88AY.430.000035
ORF1ab/nsp13303R303FCGCTTT68B.1.1.70.000005
ORF1ab/nsp13303R303FCGcTTc28B.1.1.70.000002
ORF1ab/nsp13303R303CCgcTgc88B.1.3960.005646
ORF1ab/nsp13303R303HcGccAc88B.1.617.20.00003
ORF1ab/nsp13303R303GCgcGgc37All0.000001
ORF1ab/nsp13303R303GCgCGgT37All0.000001
ORF1ab/nsp13303R303GCgCGgA17All0
ORF1ab/nsp13303R303CCgcTgc77B.10.000064
ORF1ab/nsp13303R303ACGcGCc36All0.000001
ORF1ab/nsp13303R303ACGCGCT26All0
ORF1ab/nsp13303R303ACGCGCA16All0
ORF1ab/nsp13303R303RcgCcgA66AY.1210.000812
ORF1ab/nsp13303R303RcgCcgT66AY.5.30.002024
ORF1ab/nsp13303R303RcgCcgT66B.10.000055
ORF1ab/nsp13303R303GCgcGgc36B.1.1.70.000003
ORF1ab/nsp13303R303ACGcGCc36B.1.1.70.000003
ORF1ab/nsp13303R303ACGCGCT26B.1.1.70.000002
ORF1ab/nsp13303R303GCgCGgT26B.1.1.70.000002
ORF1ab/nsp13303R303GCgCGgA16B.1.1.70.000001
ORF1ab/nsp13303R303ACGCGCA16B.1.1.70.000001
ORF1ab/nsp13303R303LcGccTc66B.1.2210.000426
ORF1ab/nsp13303R303HcGccAc55AY.440.00003
ORF1ab/nsp13303R303HcGccAc55B.1.10.000091
ORF1ab/nsp13303R303RcgCcgT55B.1.1.5190.000199
ORF1ab/nsp13303R303HcGccAc34AY.250.000018
ORF1ab/nsp13303R303HcGCcAT14AY.250.000006
ORF1ab/nsp13303R303LcGccTc44AY.39.10.000158
ORF1ab/nsp13303R303RcgCcgT44AY.420.000161
ORF1ab/nsp13303R303RcgCcgT44AY.440.000024
ORF1ab/nsp13303R303HcGccAc44B.1.1.3060.001754
ORF1ab/nsp13303R303RcgCcgT44B.1.1.3060.001754
ORF1ab/nsp13303R303RcgCcgT44B.1.1190.042105
ORF1ab/nsp13303R303HcGccAc44B.1.1600.000125
ORF1ab/nsp13303R303MCGCATG33All0.000001
ORF1ab/nsp13303R303RcgCcgT33AY.1020.00008
ORF1ab/nsp13303R303LcGCcTA13AY.250.000006
ORF1ab/nsp13303R303LcGCcTT13AY.250.000006
ORF1ab/nsp13303R303LcGccTc13AY.250.000006
ORF1ab/nsp13303R303HcGccAc33B.10.000027
ORF1ab/nsp13303R303MCGCATG33B.1.1.70.000003
ORF1ab/nsp13303R303RcgCcgT33B.1.160.280.008772
ORF1ab/nsp13303R303LcGccTc33B.1.177.160.001993
ORF1ab/nsp13303R303RcgCcgT33B.1.177.580.003995
ORF1ab/nsp13303R303LcGccTc33B.1.20.000026
ORF1ab/nsp13303R303LcGccTc33B.1.2580.0002
ORF1ab/nsp13303R303HcGccAc33B.400.001093
ORF1ab/nsp13303R303HcGccAc33C.36.30.001702
ORF1ab/nsp13303R303LcGccTc33P.1.140.000143
ORF1ab/nsp13303R303HcGccAc22A0.000774
ORF1ab/nsp13303R303CCgcTgc22A.90.090909
ORF1ab/nsp13303R303DCGCGAT12All0
ORF1ab/nsp13303R303DCGcGAc12All0
ORF1ab/nsp13303R303RcgCcgT22AY.130.000322
ORF1ab/nsp13303R303HcGccAc22AY.200.000078
ORF1ab/nsp13303R303RcgCcgT22AY.250.000012
ORF1ab/nsp13303R303ICGCATA12AY.250.000006
ORF1ab/nsp13303R303ICGCATT12AY.250.000006
ORF1ab/nsp13303R303RcgCcgT12AY.30.00001
ORF1ab/nsp13303R303RcgCcgG12AY.30.00001
ORF1ab/nsp13303R303LcGccTc22AY.40.000003
ORF1ab/nsp13303R303RcgCcgT22AY.46.20.001271
ORF1ab/nsp13303R303HcGccAc22AY.470.000062
ORF1ab/nsp13303R303HcGccAc22AY.50.000041
ORF1ab/nsp13303R303RcgCcgT22AY.750.000112
ORF1ab/nsp13303R303SCgcAgc22B.10.000018
ORF1ab/nsp13303R303RcgCcgT22B.1.10.000036
ORF1ab/nsp13303R303CCgcTgc22B.1.10.000036
ORF1ab/nsp13303R303RcgCcgT22B.1.1.270.011299
ORF1ab/nsp13303R303RcgCcgT22B.1.1.3680.006173
ORF1ab/nsp13303R303RcgCcgA22B.1.1.5260.007092
ORF1ab/nsp13303R303DCGcGAc12B.1.1.70.000001
ORF1ab/nsp13303R303DCGCGAT12B.1.1.70.000001
ORF1ab/nsp13303R303RcgCcgT22B.1.110.30.001437
ORF1ab/nsp13303R303RcgCcgT22B.1.177.210.000153
ORF1ab/nsp13303R303RcgCcgT22B.1.177.770.001452
ORF1ab/nsp13303R303RcgCcgT22B.1.20.000018
ORF1ab/nsp13303R303CCgcTgc22B.1.20.000018
ORF1ab/nsp13303R303RcgCcgA22B.1.2400.000431
ORF1ab/nsp13303R303HcGccAc22B.1.2430.000139
ORF1ab/nsp13303R303RcgCcgT22B.1.360.000292
ORF1ab/nsp13303R303CCgcTgc22B.1.4520.027397
ORF1ab/nsp13303R303SCgcAgc22B.1.5250.000226
ORF1ab/nsp13303R303RcgCcgT22B.1.5260.000047
ORF1ab/nsp13303R303HcGccAc22B.1.617.10.000258
ORF1ab/nsp13303R303HcGccAc22C.36.3.10.005435
ORF1ab/nsp13303R303RcgCcgT22D.20.00015
ORF1ab/nsp13303R303TCGcACc12P.10.000016
ORF1ab/nsp13303R303TCGCACT12P.10.000016
ORF1ab/nsp13303R303NCGcAAc12P.10.000016
ORF1ab/nsp13303R303PcGCcCT12P.10.000016
ORF1ab/nsp13303R303PcGccCc12P.10.000016
ORF1ab/nsp13303R303NCGCAAT12P.10.000016
ORF1ab/nsp13303R303HcGccAc22Q.80.00033
ORF1ab/nsp13303R303CCgcTgc110.055556
ORF1ab/nsp13303R303CCgcTgc11A.20.000662
ORF1ab/nsp13303R303HcGccAc11A.270.001656
ORF1ab/nsp13303R303HcGccAc11A.50.001923
ORF1ab/nsp13303R303del1cGcc-c11All0
ORF1ab/nsp13303R303WCgCTgG11All0
ORF1ab/nsp13303R303CCgcTgc11AY.1020.000027
ORF1ab/nsp13303R303HcGccAc11AY.1170.000085
ORF1ab/nsp13303R303LcGccTc11AY.1200.000037
ORF1ab/nsp13303R303HcGccAc11AY.120.10.000321
ORF1ab/nsp13303R303HcGccAc11AY.1210.000135
ORF1ab/nsp13303R303CCgcTgc11AY.200.000039
ORF1ab/nsp13303R303RcgCcgT11AY.200.000039
ORF1ab/nsp13303R303RcgCcgT11AY.230.00007
ORF1ab/nsp13303R303NCGCAAT11AY.250.000006
ORF1ab/nsp13303R303CCgcTgc11AY.250.000006
ORF1ab/nsp13303R303QcGCcAA11AY.250.000006
ORF1ab/nsp13303R303KCGCAAA11AY.250.000006
ORF1ab/nsp13303R303HcGccAc11AY.330.000067
ORF1ab/nsp13303R303LcGccTc11AY.340.000097
ORF1ab/nsp13303R303SCgcAgc11AY.380.000499
ORF1ab/nsp13303R303SCgcAgc11AY.40.000002
ORF1ab/nsp13303R303LcGccTc11AY.4.20.000022
ORF1ab/nsp13303R303HcGccAc11AY.4.40.000409
ORF1ab/nsp13303R303delCGC---11AY.420.00004
ORF1ab/nsp13303R303HcGccAc11AY.420.00004
ORF1ab/nsp13303R303delCGC---11AY.430.000004
ORF1ab/nsp13303R303RcgCcgA11AY.430.000004
ORF1ab/nsp13303R303LcGccTc11AY.440.000006
ORF1ab/nsp13303R303GCgCGgT11AY.440.000006
ORF1ab/nsp13303R303HcGccAc11AY.510.000909
ORF1ab/nsp13303R303RcgCcgT11AY.540.000095
ORF1ab/nsp13303R303HcGccAc11AY.540.000095
ORF1ab/nsp13303R303RcgCcgT11AY.610.000105
ORF1ab/nsp13303R303HcGccAc11AY.640.000595
ORF1ab/nsp13303R303delCGC---11AY.75.10.00018
ORF1ab/nsp13303R303CCgcTgc11AY.790.001211
ORF1ab/nsp13303R303LcGccTc11AY.920.000287
ORF1ab/nsp13303R303HcGccAc11AY.980.000079
ORF1ab/nsp13303R303HcGccAc11AY.98.10.000048
ORF1ab/nsp13303R303RcgCcgT11AY.99.20.000092
ORF1ab/nsp13303R303delCGC---11B0.000128
ORF1ab/nsp13303R303CCgcTgc11B0.000128
ORF1ab/nsp13303R303RcgCcgT11B0.000128
ORF1ab/nsp13303R303delCGC---11B.10.000009
ORF1ab/nsp13303R303LcGccTc11B.10.000009
ORF1ab/nsp13303R303CCgcTgc11B.1.1.1530.001095
ORF1ab/nsp13303R303RcgCcgT11B.1.1.1890.001513
ORF1ab/nsp13303R303RcgCcgT11B.1.1.2370.005405
ORF1ab/nsp13303R303HcGccAc11B.1.1.5190.00004
ORF1ab/nsp13303R303WCgCTgG11B.1.1.70.000001
ORF1ab/nsp13303R303delCGC---11B.1.1.70.000001
ORF1ab/nsp13303R303SCgcAgc11B.1.1770.000013
ORF1ab/nsp13303R303LcGccTc11B.1.1770.000013
ORF1ab/nsp13303R303HcGccAc11B.1.1770.000013
ORF1ab/nsp13303R303HcGccAc11B.1.177.120.000152
ORF1ab/nsp13303R303CCgcTgc11B.1.177.160.000664
ORF1ab/nsp13303R303HcGccAc11B.1.177.210.000076
ORF1ab/nsp13303R303HcGccAc11B.1.177.350.000691
ORF1ab/nsp13303R303HcGccAc11B.1.177.530.002392
ORF1ab/nsp13303R303RcgCcgT11B.1.177.570.000281
ORF1ab/nsp13303R303CCgcTgc11B.1.177.60.000977
ORF1ab/nsp13303R303HcGccAc11B.1.177.860.000183
ORF1ab/nsp13303R303HcGccAc11B.1.258.140.00098
ORF1ab/nsp13303R303HcGccAc11B.1.258.170.000104
ORF1ab/nsp13303R303RcgCcgT11B.1.258.170.000104
ORF1ab/nsp13303R303HcGccAc11B.1.3510.00003
ORF1ab/nsp13303R303HcGccAc11B.1.3560.001727
ORF1ab/nsp13303R303HcGccAc11B.1.36.170.000494
ORF1ab/nsp13303R303HcGccAc11B.1.36.290.000517
ORF1ab/nsp13303R303HcGccAc11B.1.36.360.000602
ORF1ab/nsp13303R303RcgCcgG11B.1.36.80.001
ORF1ab/nsp13303R303RcgCcgT11B.1.4270.00005
ORF1ab/nsp13303R303HcGccAc11B.1.4270.00005
ORF1ab/nsp13303R303HcGccAc11B.1.4290.000024
ORF1ab/nsp13303R303RcgCcgT11B.1.4700.001404
ORF1ab/nsp13303R303CCgcTgc11B.1.5260.000024
ORF1ab/nsp13303R303LcGccTc11B.1.5260.000024
ORF1ab/nsp13303R303HcGccAc11B.1.5610.000397
ORF1ab/nsp13303R303RcgCcgT11B.1.5770.000687
ORF1ab/nsp13303R303del1cGcc-c11B.1.5950.000261
ORF1ab/nsp13303R303SCgcAgc11B.1.5960.000087
ORF1ab/nsp13303R303LcGccTc11B.1.617.20.000004
ORF1ab/nsp13303R303SCgcAgc11B.1.617.20.000004
ORF1ab/nsp13303R303delCGC---11B.1.617.20.000004
ORF1ab/nsp13303R303LcGccTc11B.1.6210.000089
ORF1ab/nsp13303R303HcGccAc11B.1.6300.005236
ORF1ab/nsp13303R303CCgcTgc11B.400.000364
ORF1ab/nsp13303R303RcgCcgT11C.1.20.004255
ORF1ab/nsp13303R303LcGccTc11C.300.001727
ORF1ab/nsp13303R303RcgCcgT11C.370.000116
ORF1ab/nsp13303R303CCgcTgc11C.370.000116
ORF1ab/nsp13303R303LcGccTc11D.20.000075
ORF1ab/nsp13303R303CCgcTgc11D.20.000075
ORF1ab/nsp13303R303delCGC---11P.10.000016
ORF1ab/nsp13303R303RcgCcgT11P.1.120.000484
ORF1ab/nsp13303R303CCgcTgc11P.1.20.001156
ORF1ab/nsp13303R303CCgcTgc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.