CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 302 | A302A | A5626A | syn | gcT | gcC | 1028 | 538 | 0.523346 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302A | A5626A | syn | gcT | gcA | 1028 | 420 | 0.40856 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302A | A5626A | syn | gcT | gcG | 1028 | 70 | 0.0680934 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302S | A5626S | nonsyn | Gct | Tct | 679 | 648 | 0.954345 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302S | A5626S | nonsyn | GcT | TcA | 679 | 21 | 0.0309278 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302S | A5626S | nonsyn | GcT | TcC | 679 | 8 | 0.011782 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302S | A5626S | nonsyn | GCT | AGC | 679 | 1 | 0.00147275 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302S | A5626S | nonsyn | GcT | TcG | 679 | 1 | 0.00147275 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302T | A5626T | nonsyn | Gct | Act | 82 | 51 | 0.621951 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302T | A5626T | nonsyn | GcT | AcA | 82 | 22 | 0.268293 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302T | A5626T | nonsyn | GcT | AcC | 82 | 8 | 0.097561 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302T | A5626T | nonsyn | GcT | AcG | 82 | 1 | 0.0121951 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302D | A5626D | nonsyn | gCt | gAt | 74 | 74 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302V | A5626V | nonsyn | gCt | gTt | 72 | 71 | 0.986111 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302I | A5626I | nonsyn | GCT | ATA | 72 | 32 | 0.444444 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302I | A5626I | nonsyn | GCt | ATt | 72 | 26 | 0.361111 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302I | A5626I | nonsyn | GCT | ATC | 72 | 14 | 0.194444 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302V | A5626V | nonsyn | gCT | gTA | 72 | 1 | 0.0138889 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302N | A5626N | nonsyn | GCt | AAt | 41 | 26 | 0.634146 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302N | A5626N | nonsyn | GCT | AAC | 41 | 15 | 0.365854 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302Y | A5626Y | nonsyn | GCt | TAt | 35 | 22 | 0.628571 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302Y | A5626Y | nonsyn | GCT | TAC | 35 | 13 | 0.371429 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302K | A5626K | nonsyn | GCT | AAA | 32 | 30 | 0.9375 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302L | A5626L | nonsyn | GCT | TTA | 32 | 24 | 0.75 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302F | A5626F | nonsyn | GCt | TTt | 32 | 20 | 0.625 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302F | A5626F | nonsyn | GCT | TTC | 32 | 12 | 0.375 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302L | A5626L | nonsyn | GCt | CTt | 32 | 2 | 0.0625 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302K | A5626K | nonsyn | GCT | AAG | 32 | 2 | 0.0625 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302L | A5626L | nonsyn | GCT | CTA | 32 | 2 | 0.0625 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302L | A5626L | nonsyn | GCT | TTG | 32 | 2 | 0.0625 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302L | A5626L | nonsyn | GCT | CTG | 32 | 1 | 0.03125 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302L | A5626L | nonsyn | GCT | CTC | 32 | 1 | 0.03125 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302X | A5626X | nonsyn | GCT | TAA | 26 | 24 | 0.923077 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302X | A5626X | nonsyn | GCT | TAG | 26 | 1 | 0.0384615 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302X | A5626X | nonsyn | GCT | TGA | 26 | 1 | 0.0384615 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302G | A5626G | nonsyn | gCt | gGt | 22 | 22 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302del | A5626del | del | GCT | --- | 6 | 6 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302P | A5626P | nonsyn | Gct | Cct | 6 | 5 | 0.833333 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302P | A5626P | nonsyn | GcT | CcG | 6 | 1 | 0.166667 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302M | A5626M | nonsyn | GCT | ATG | 3 | 3 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302H | A5626H | nonsyn | GCt | CAt | 3 | 2 | 0.666667 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302Q | A5626Q | nonsyn | GCT | CAA | 3 | 2 | 0.666667 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302H | A5626H | nonsyn | GCT | CAC | 3 | 1 | 0.333333 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302Q | A5626Q | nonsyn | GCT | CAG | 3 | 1 | 0.333333 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302del1 | A5626del1 | del | Gct | -ct | 2 | 2 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302del2 | A5626del2 | del | GCt | --t | 1 | 1 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302E | A5626E | nonsyn | gCT | gAA | 1 | 1 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302C | A5626C | nonsyn | GCT | TGC | 1 | 1 | 1 | 17140-17142 |
ORF1ab/nsp13 | 302 | A302R | A5626R | nonsyn | GCT | AGA | 1 | 1 | 1 | 17140-17142 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 538 | 1028 | All | 0.000103 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 420 | 1028 | All | 0.00008 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 70 | 1028 | All | 0.000013 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 648 | 679 | All | 0.000124 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcA | 21 | 679 | All | 0.000004 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcC | 8 | 679 | All | 0.000002 |
ORF1ab/nsp13 | 302 | A302S | GCT | AGC | 1 | 679 | All | 0 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcG | 1 | 679 | All | 0 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 202 | 275 | B.1.1.7 | 0.000181 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 66 | 275 | B.1.1.7 | 0.000059 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 7 | 275 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 180 | 191 | B.1.617.2 | 0.000678 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 8 | 191 | B.1.617.2 | 0.00003 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 3 | 191 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 186 | 186 | B.1.218 | 0.958763 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 134 | 134 | B.1.1.294 | 0.16962 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 90 | 90 | AY.25 | 0.000541 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 51 | 82 | All | 0.00001 |
ORF1ab/nsp13 | 302 | A302T | GcT | AcA | 22 | 82 | All | 0.000004 |
ORF1ab/nsp13 | 302 | A302T | GcT | AcC | 8 | 82 | All | 0.000002 |
ORF1ab/nsp13 | 302 | A302T | GcT | AcG | 1 | 82 | All | 0 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 74 | 74 | All | 0.000014 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 71 | 72 | All | 0.000014 |
ORF1ab/nsp13 | 302 | A302I | GCT | ATA | 32 | 72 | All | 0.000006 |
ORF1ab/nsp13 | 302 | A302I | GCt | ATt | 26 | 72 | All | 0.000005 |
ORF1ab/nsp13 | 302 | A302I | GCT | ATC | 14 | 72 | All | 0.000003 |
ORF1ab/nsp13 | 302 | A302V | gCT | gTA | 1 | 72 | All | 0 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 42 | 70 | B.1.1.7 | 0.000038 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcA | 18 | 70 | B.1.1.7 | 0.000016 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcC | 8 | 70 | B.1.1.7 | 0.000007 |
ORF1ab/nsp13 | 302 | A302S | GCT | AGC | 1 | 70 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcG | 1 | 70 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302I | GCT | ATA | 31 | 68 | B.1.1.7 | 0.000028 |
ORF1ab/nsp13 | 302 | A302I | GCt | ATt | 24 | 68 | B.1.1.7 | 0.000021 |
ORF1ab/nsp13 | 302 | A302I | GCT | ATC | 13 | 68 | B.1.1.7 | 0.000012 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 59 | 61 | AY.100 | 0.002714 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 2 | 61 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 56 | 56 | B.1.1.214 | 0.003106 |
ORF1ab/nsp13 | 302 | A302T | GcT | AcA | 21 | 48 | B.1.1.7 | 0.000019 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 18 | 48 | B.1.1.7 | 0.000016 |
ORF1ab/nsp13 | 302 | A302T | GcT | AcC | 8 | 48 | B.1.1.7 | 0.000007 |
ORF1ab/nsp13 | 302 | A302T | GcT | AcG | 1 | 48 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 43 | 43 | AY.4 | 0.000067 |
ORF1ab/nsp13 | 302 | A302N | GCt | AAt | 26 | 41 | All | 0.000005 |
ORF1ab/nsp13 | 302 | A302N | GCT | AAC | 15 | 41 | All | 0.000003 |
ORF1ab/nsp13 | 302 | A302N | GCt | AAt | 25 | 39 | B.1.1.7 | 0.000022 |
ORF1ab/nsp13 | 302 | A302N | GCT | AAC | 14 | 39 | B.1.1.7 | 0.000013 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 37 | 37 | B.1 | 0.000339 |
ORF1ab/nsp13 | 302 | A302Y | GCt | TAt | 22 | 35 | All | 0.000004 |
ORF1ab/nsp13 | 302 | A302Y | GCT | TAC | 13 | 35 | All | 0.000002 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 34 | 34 | AY.25 | 0.000205 |
ORF1ab/nsp13 | 302 | A302Y | GCt | TAt | 21 | 33 | B.1.1.7 | 0.000019 |
ORF1ab/nsp13 | 302 | A302Y | GCT | TAC | 12 | 33 | B.1.1.7 | 0.000011 |
ORF1ab/nsp13 | 302 | A302K | GCT | AAA | 30 | 32 | All | 0.000006 |
ORF1ab/nsp13 | 302 | A302L | GCT | TTA | 24 | 32 | All | 0.000005 |
ORF1ab/nsp13 | 302 | A302F | GCt | TTt | 20 | 32 | All | 0.000004 |
ORF1ab/nsp13 | 302 | A302F | GCT | TTC | 12 | 32 | All | 0.000002 |
ORF1ab/nsp13 | 302 | A302L | GCT | TTG | 2 | 32 | All | 0 |
ORF1ab/nsp13 | 302 | A302L | GCt | CTt | 2 | 32 | All | 0 |
ORF1ab/nsp13 | 302 | A302K | GCT | AAG | 2 | 32 | All | 0 |
ORF1ab/nsp13 | 302 | A302L | GCT | CTA | 2 | 32 | All | 0 |
ORF1ab/nsp13 | 302 | A302L | GCT | CTG | 1 | 32 | All | 0 |
ORF1ab/nsp13 | 302 | A302L | GCT | CTC | 1 | 32 | All | 0 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp13 | 302 | A302K | GCT | AAA | 30 | 32 | B.1.1.7 | 0.000027 |
ORF1ab/nsp13 | 302 | A302K | GCT | AAG | 2 | 32 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 302 | A302L | GCT | TTA | 23 | 31 | B.1.1.7 | 0.000021 |
ORF1ab/nsp13 | 302 | A302L | GCT | CTA | 2 | 31 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 302 | A302L | GCT | TTG | 2 | 31 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 302 | A302L | GCt | CTt | 2 | 31 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 302 | A302L | GCT | CTG | 1 | 31 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302L | GCT | CTC | 1 | 31 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302F | GCt | TTt | 18 | 29 | B.1.1.7 | 0.000016 |
ORF1ab/nsp13 | 302 | A302F | GCT | TTC | 11 | 29 | B.1.1.7 | 0.00001 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 27 | 27 | B.4.1 | 0.509434 |
ORF1ab/nsp13 | 302 | A302X | GCT | TAA | 24 | 26 | All | 0.000005 |
ORF1ab/nsp13 | 302 | A302X | GCT | TGA | 1 | 26 | All | 0 |
ORF1ab/nsp13 | 302 | A302X | GCT | TAG | 1 | 26 | All | 0 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp13 | 302 | A302X | GCT | TAA | 24 | 26 | B.1.1.7 | 0.000021 |
ORF1ab/nsp13 | 302 | A302X | GCT | TGA | 1 | 26 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302X | GCT | TAG | 1 | 26 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp13 | 302 | A302G | gCt | gGt | 22 | 22 | All | 0.000004 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 22 | 22 | AY.46.6 | 0.001589 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 19 | 20 | B.1.258.17 | 0.001975 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 20 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 11 | 16 | B.1 | 0.000101 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 3 | 16 | B.1 | 0.000027 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 2 | 16 | B.1 | 0.000018 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 10 | 15 | AY.4 | 0.000016 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 5 | 15 | AY.4 | 0.000008 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 15 | 15 | B.1.111 | 0.017626 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 14 | 15 | B.1.2 | 0.000123 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcA | 1 | 15 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 13 | 14 | B.1.1.7 | 0.000012 |
ORF1ab/nsp13 | 302 | A302V | gCT | gTA | 1 | 14 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 7 | 12 | C.37 | 0.000812 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 5 | 12 | C.37 | 0.00058 |
ORF1ab/nsp13 | 302 | A302G | gCt | gGt | 12 | 12 | P.1.12 | 0.005808 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 6 | 11 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 5 | 11 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 8 | 10 | AY.3 | 0.00008 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 2 | 10 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 6 | 9 | AY.44 | 0.000037 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 2 | 9 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 9 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 9 | 9 | C.30.1 | 0.060403 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 7 | 7 | B.1.235 | 0.017632 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 4 | 7 | P.1 | 0.000063 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 2 | 7 | P.1 | 0.000032 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 7 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302del | GCT | --- | 6 | 6 | All | 0.000001 |
ORF1ab/nsp13 | 302 | A302P | Gct | Cct | 5 | 6 | All | 0.000001 |
ORF1ab/nsp13 | 302 | A302P | GcT | CcG | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 302 | A302G | gCt | gGt | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 5 | 6 | B.1.1.519 | 0.000199 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 6 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 4 | 6 | Q.8 | 0.00066 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 2 | 6 | Q.8 | 0.00033 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 5 | 5 | B.1.1.174 | 0.016892 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 5 | 5 | B.1.1.54 | 0.015106 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 4 | 5 | B.1.351 | 0.000119 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 5 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 3 | 4 | AY.103 | 0.000019 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 4 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 4 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 4 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 3 | 4 | AY.47 | 0.000093 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 4 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 4 | 4 | B.1.501 | 0.029412 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | B.1.509 | 0.003463 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp13 | 302 | A302M | GCT | ATG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 302 | A302H | GCt | CAt | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 302 | A302Q | GCT | CAA | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 302 | A302Q | GCT | CAG | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 302 | A302H | GCT | CAC | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 2 | 3 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 3 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp13 | 302 | A302M | GCT | ATG | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 302 | A302Q | GCT | CAA | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 302 | A302H | GCt | CAt | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 302 | A302Q | GCT | CAG | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302H | GCT | CAC | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 2 | A | 0.000387 |
ORF1ab/nsp13 | 302 | A302S | GcT | TcA | 1 | 2 | A | 0.000387 |
ORF1ab/nsp13 | 302 | A302del1 | Gct | -ct | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 302 | A302F | GCt | TTt | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302Y | GCt | TAt | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302I | GCt | ATt | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302I | GCT | ATC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302N | GCT | AAC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302Y | GCT | TAC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302F | GCT | TTC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302N | GCt | AAt | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 2 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 302 | A302P | Gct | Cct | 1 | 2 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 2 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 302 | A302P | GcT | CcG | 1 | 2 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 2 | 2 | B | 0.000256 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp13 | 302 | A302P | Gct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 2 | 2 | B.1.258.24 | 0.021505 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp13 | 302 | A302P | Gct | Cct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp13 | 302 | A302I | GCT | ATA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302T | GcT | AcA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302I | GCt | ATt | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | A.12 | 0.166667 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 302 | A302C | GCT | TGC | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 302 | A302del2 | GCt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 302 | A302E | gCT | gAA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 302 | A302R | GCT | AGA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 302 | A302G | gCt | gGt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 302 | A302G | gCt | gGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp13 | 302 | A302del | GCT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 302 | A302del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 302 | A302del | GCT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 302 | A302del | GCT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 302 | A302del | GCT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 302 | A302del2 | GCt | --t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 302 | A302del1 | Gct | -ct | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 302 | A302C | GCT | TGC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302R | GCT | AGA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302E | gCT | gAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp13 | 302 | A302G | gCt | gGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 302 | A302del1 | Gct | -ct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.258.20 | 0.015873 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp13 | 302 | A302D | gCt | gAt | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.517.1 | 0.005263 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 302 | A302V | gCt | gTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 302 | A302del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | B.4.8 | 0.071429 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 302 | A302T | Gct | Act | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcA | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 302 | A302S | Gct | Tct | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp13 | 302 | A302F | GCt | TTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302L | GCT | TTA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302G | gCt | gGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 302 | A302A | gcT | gcC | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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