CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 296 | A296S | A5620S | nonsyn | Gct | Tct | 61405 | 61405 | 1 | 17122-17124 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 61405 | 61405 | All | 0.011744 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 24352 | 24352 | B.1.617.2 | 0.091695 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 21695 | 21695 | AY.100 | 0.998114 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2859 | 2859 | B.1.1.434 | 0.996514 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1799 | 1799 | AY.4 | 0.0028 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1540 | 1540 | B.1.1.7 | 0.001379 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1090 | 1090 | P.1 | 0.017172 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 939 | 939 | AY.60 | 0.880863 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 552 | 552 | AY.44 | 0.00336 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 500 | 500 | B.1.2 | 0.004403 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 452 | 452 | C.36 | 0.411658 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 438 | 438 | AY.43 | 0.001941 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 315 | 315 | AY.25 | 0.001895 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 290 | 290 | AY.117 | 0.02451 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 258 | 258 | P.1.14 | 0.012333 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 196 | 196 | B.1 | 0.001795 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 162 | 162 | AY.98 | 0.012797 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 140 | 140 | AY.33 | 0.009349 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 139 | 139 | B.1.549 | 1 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 121 | 121 | AY.84 | 0.052931 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 118 | 118 | AY.103 | 0.000733 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 108 | 108 | AY.86 | 0.089627 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 107 | 107 | B.1.1 | 0.001941 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 107 | 107 | B.1.351 | 0.003181 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 106 | 106 | B.1.526 | 0.002491 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 97 | 97 | AY.118 | 0.006077 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 94 | 94 | AY.92 | 0.027004 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 91 | 91 | B.1.575 | 0.027609 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 87 | 87 | AY.42 | 0.0035 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 86 | 86 | AY.116 | 0.024663 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 83 | 83 | AY.47 | 0.002582 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 79 | 79 | AY.113 | 0.011249 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 76 | 76 | AY.3 | 0.000756 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 55 | 55 | AY.111 | 0.010073 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 51 | 51 | AY.39 | 0.00126 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 51 | 51 | B | 0.006518 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 49 | 49 | B.1.1.519 | 0.001946 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 49 | 49 | B.1.596 | 0.00427 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 48 | 48 | AY.102 | 0.001273 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 47 | 47 | B.1.177.81 | 0.008898 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 46 | 46 | B.1.36 | 0.006711 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 45 | 45 | AY.5.3 | 0.015182 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 42 | 42 | B.1.1.222 | 0.008568 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 39 | 39 | AY.120 | 0.00145 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 38 | 38 | AY.13 | 0.006117 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 37 | 37 | AY.5 | 0.000764 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 37 | 37 | AY.90 | 0.025325 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 37 | 37 | AY.98.1 | 0.001792 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 35 | 35 | B.1.429 | 0.000824 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 34 | 34 | AY.69 | 0.006347 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 32 | 32 | AY.101 | 0.015694 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 28 | 28 | AY.79 | 0.033898 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 26 | 26 | AY.19 | 0.029647 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 26 | 26 | AY.26 | 0.000736 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 26 | 26 | AY.75 | 0.001457 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 25 | 25 | AY.23 | 0.001744 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 25 | 25 | AY.4.5 | 0.002687 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 25 | 25 | AY.46 | 0.002602 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 25 | 25 | B.1.258 | 0.001664 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 24 | 24 | B.1.1.70 | 0.008186 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 23 | 23 | AY.78 | 0.035439 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 22 | 22 | AY.77 | 0.024803 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 21 | 21 | B.1.1.217 | 0.076364 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 20 | 20 | AY.67 | 0.009285 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 20 | 20 | AY.88 | 0.017683 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 19 | 19 | AY.110 | 0.002141 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 19 | 19 | AY.20 | 0.000738 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 19 | 19 | AY.27 | 0.00123 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 19 | 19 | AY.34 | 0.001842 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 19 | 19 | AY.36 | 0.002816 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 19 | 19 | B.1.427 | 0.000959 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 18 | 18 | AY.105 | 0.011576 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 18 | 18 | AY.119 | 0.000636 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 18 | 18 | AY.41 | 0.005291 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 18 | 18 | AY.95 | 0.013699 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 17 | 17 | AY.38 | 0.008487 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 17 | 17 | B.1.258.17 | 0.001768 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 16 | 16 | AY.45 | 0.001947 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 16 | 16 | AY.62 | 0.006972 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 15 | 15 | AY.16 | 0.005695 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 15 | 15 | AY.46.2 | 0.00953 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 15 | 15 | AY.7.1 | 0.001691 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 15 | 15 | B.1.1.284 | 0.001611 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 15 | 15 | P.2 | 0.0028 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 14 | 14 | AY.108 | 0.015436 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 14 | 14 | AY.34.1 | 0.007139 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 14 | 14 | B.1.617.1 | 0.001806 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 13 | 13 | AY.104 | 0.025794 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 13 | 13 | AY.32 | 0.006922 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 13 | 13 | AY.81 | 0.025896 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 13 | 13 | AY.85 | 0.005553 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 13 | 13 | B.1.1.318 | 0.003923 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 12 | 12 | AY.48 | 0.005581 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 12 | 12 | AY.99 | 0.012592 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 12 | 12 | B.1.139 | 0.008798 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 12 | 12 | B.1.637 | 0.000877 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 12 | 12 | Q.3 | 0.00174 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 11 | 11 | AY.55 | 0.010092 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 11 | 11 | B.1.1.1 | 0.003594 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 11 | 11 | R.1 | 0.00099 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 9 | 9 | AY.21 | 0.017078 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 9 | 9 | AY.4.4 | 0.003682 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 9 | 9 | AY.70 | 0.001877 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 9 | 9 | AY.93 | 0.002458 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 9 | 9 | B.1.1.220 | 0.016729 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 9 | 9 | B.1.621.1 | 0.004552 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 8 | 8 | AY.54 | 0.000763 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 8 | 8 | AY.87 | 0.006661 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 8 | 8 | B.1.36.8 | 0.008 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | AY.109 | 0.005178 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | AY.120.1 | 0.002247 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | AY.83 | 0.012069 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | B.1.146 | 0.029661 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | B.1.349 | 0.005004 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | B.1.110.3 | 0.00431 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | B.1.111 | 0.007051 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | B.1.362 | 0.009245 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | B.1.619 | 0.005226 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | A.27 | 0.008278 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | AY.114 | 0.001156 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | B.1.210 | 0.010661 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | B.1.236 | 0.010267 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | B.1.416 | 0.006345 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | B.1.588 | 0.00455 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | C.17 | 0.277778 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | AZ.1 | 0.003469 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.1.282 | 0.046512 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.1.406 | 0.025974 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.177.52 | 0.00703 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | B.1.630 | 0.020942 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | C.39 | 0.075472 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.1.304 | 0.008427 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.1.422 | 0.136364 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.441 | 0.028846 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | B.10 | 0.024793 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AY.115 | 0.010417 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.333 | 0.002153 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.430 | 0.083333 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.1.99 | 0.047619 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.37 | 0.027027 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.388 | 0.090909 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp13 | 296 | A296S | Gct | Tct | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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