CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 292

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13292A292SA5616SnonsynGctTct13571357117110-17112
ORF1ab/nsp13292A292AA5616AsyngcTgcC1911460.76439817110-17112
ORF1ab/nsp13292A292AA5616AsyngcTgcA191360.18848217110-17112
ORF1ab/nsp13292A292AA5616AsyngcTgcG19190.047120417110-17112
ORF1ab/nsp13292A292VA5616VnonsyngCtgTt6060117110-17112
ORF1ab/nsp13292A292TA5616TnonsynGctAct31300.96774217110-17112
ORF1ab/nsp13292A292TA5616TnonsynGcTAcA3110.032258117110-17112
ORF1ab/nsp13292A292delA5616deldelGCT---1717117110-17112
ORF1ab/nsp13292A292del1A5616del1delGct-ct980.88888917110-17112
ORF1ab/nsp13292A292del1A5616del1delgcTgc-910.11111117110-17112
ORF1ab/nsp13292A292GA5616GnonsyngCtgGt870.87517110-17112
ORF1ab/nsp13292A292GA5616GnonsyngCTgGG810.12517110-17112
ORF1ab/nsp13292A292PA5616PnonsynGctCct420.517110-17112
ORF1ab/nsp13292A292PA5616PnonsynGcTCcG410.2517110-17112
ORF1ab/nsp13292A292PA5616PnonsynGcTCcA410.2517110-17112

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13292A292SGctTct13571357All0.00026
ORF1ab/nsp13292A292SGctTct10331033B.1.6200.977294
ORF1ab/nsp13292A292AgcTgcC146191All0.000028
ORF1ab/nsp13292A292AgcTgcA36191All0.000007
ORF1ab/nsp13292A292AgcTgcG9191All0.000002
ORF1ab/nsp13292A292SGctTct9595B.10.00087
ORF1ab/nsp13292A292VgCtgTt6060All0.000011
ORF1ab/nsp13292A292AgcTgcC3644B.1.1.70.000032
ORF1ab/nsp13292A292AgcTgcG644B.1.1.70.000005
ORF1ab/nsp13292A292AgcTgcA244B.1.1.70.000002
ORF1ab/nsp13292A292AgcTgcC4343AY.30.000428
ORF1ab/nsp13292A292SGctTct4040B.1.1600.001248
ORF1ab/nsp13292A292SGctTct3939B.1.1.70.000035
ORF1ab/nsp13292A292AgcTgcA2839B.1.1770.000369
ORF1ab/nsp13292A292AgcTgcC1139B.1.1770.000145
ORF1ab/nsp13292A292TGctAct3031All0.000006
ORF1ab/nsp13292A292TGcTAcA131All0
ORF1ab/nsp13292A292delGCT---1717All0.000003
ORF1ab/nsp13292A292SGctTct1717AY.290.000268
ORF1ab/nsp13292A292VgCtgTt1212AY.40.000019
ORF1ab/nsp13292A292SGctTct1010AY.40.000016
ORF1ab/nsp13292A292del1Gct-ct89All0.000002
ORF1ab/nsp13292A292del1gcTgc-19All0
ORF1ab/nsp13292A292AgcTgcC99AY.1030.000056
ORF1ab/nsp13292A292GgCtgGt78All0.000001
ORF1ab/nsp13292A292GgCTgGG18All0
ORF1ab/nsp13292A292SGctTct88AY.690.001493
ORF1ab/nsp13292A292VgCtgTt88B.1.1.70.000007
ORF1ab/nsp13292A292SGctTct77AY.440.000043
ORF1ab/nsp13292A292SGctTct77B.1.177.600.001529
ORF1ab/nsp13292A292VgCtgTt66AY.1030.000037
ORF1ab/nsp13292A292AgcTgcC56AY.430.000022
ORF1ab/nsp13292A292AgcTgcG16AY.430.000004
ORF1ab/nsp13292A292SGctTct66AY.670.002786
ORF1ab/nsp13292A292TGctAct66B.10.000055
ORF1ab/nsp13292A292delGCT---55AY.250.00003
ORF1ab/nsp13292A292AgcTgcC55AY.250.00003
ORF1ab/nsp13292A292AgcTgcC45AY.290.000063
ORF1ab/nsp13292A292AgcTgcA15AY.290.000016
ORF1ab/nsp13292A292GgCtgGt55AY.380.002496
ORF1ab/nsp13292A292TGctAct55AY.40.000008
ORF1ab/nsp13292A292SGctTct55AY.99.20.000461
ORF1ab/nsp13292A292TGctAct55B.1.1.70.000004
ORF1ab/nsp13292A292SGctTct55B.1.20.000044
ORF1ab/nsp13292A292VgCtgTt55B.1.3510.000149
ORF1ab/nsp13292A292SGctTct55B.1.4990.005252
ORF1ab/nsp13292A292PGctCct24All0
ORF1ab/nsp13292A292PGcTCcG14All0
ORF1ab/nsp13292A292PGcTCcA14All0
ORF1ab/nsp13292A292SGctTct44AY.430.000018
ORF1ab/nsp13292A292SGctTct44B.1.10.000073
ORF1ab/nsp13292A292SGctTct44B.1.1770.000053
ORF1ab/nsp13292A292AgcTgcC44B.1.20.000035
ORF1ab/nsp13292A292SGctTct44B.270.061538
ORF1ab/nsp13292A292SGctTct33AY.1000.000138
ORF1ab/nsp13292A292SGctTct33AY.250.000018
ORF1ab/nsp13292A292AgcTgcC23AY.40.000003
ORF1ab/nsp13292A292AgcTgcA13AY.40.000002
ORF1ab/nsp13292A292SGctTct33AY.9.20.00011
ORF1ab/nsp13292A292del1Gct-ct33B.1.1.70.000003
ORF1ab/nsp13292A292TGctAct33B.1.1770.00004
ORF1ab/nsp13292A292AgcTgcC33B.1.4270.000151
ORF1ab/nsp13292A292AgcTgcC33B.6.60.002667
ORF1ab/nsp13292A292SGctTct33P.10.000047
ORF1ab/nsp13292A292SGctTct22AY.1030.000012
ORF1ab/nsp13292A292VgCtgTt22AY.200.000078
ORF1ab/nsp13292A292SGctTct22AY.30.00002
ORF1ab/nsp13292A292delGCT---22AY.430.000009
ORF1ab/nsp13292A292AgcTgcC22AY.440.000012
ORF1ab/nsp13292A292VgCtgTt22AY.440.000012
ORF1ab/nsp13292A292TGctAct22AY.9.20.000073
ORF1ab/nsp13292A292VgCtgTt22AZ.30.00304
ORF1ab/nsp13292A292SGctTct22B0.000256
ORF1ab/nsp13292A292delGCT---22B.10.000018
ORF1ab/nsp13292A292AgcTgcC22B.10.000018
ORF1ab/nsp13292A292AgcTgcG12B.1.10.000018
ORF1ab/nsp13292A292AgcTgcA12B.1.10.000018
ORF1ab/nsp13292A292VgCtgTt22B.1.1.3170.000823
ORF1ab/nsp13292A292SGctTct22B.1.1.3720.001377
ORF1ab/nsp13292A292delGCT---22B.1.1.70.000002
ORF1ab/nsp13292A292GgCtgGt12B.1.1.70.000001
ORF1ab/nsp13292A292GgCTgGG12B.1.1.70.000001
ORF1ab/nsp13292A292VgCtgTt22B.1.177.120.000303
ORF1ab/nsp13292A292AgcTgcC22B.1.177.810.000379
ORF1ab/nsp13292A292SGctTct22B.1.2410.001623
ORF1ab/nsp13292A292SGctTct22B.1.258.170.000208
ORF1ab/nsp13292A292VgCtgTt22B.1.3350.020619
ORF1ab/nsp13292A292SGctTct22B.1.4270.000101
ORF1ab/nsp13292A292VgCtgTt22B.1.5090.001732
ORF1ab/nsp13292A292SGctTct22B.1.617.20.000008
ORF1ab/nsp13292A292VgCtgTt22B.1.617.20.000008
ORF1ab/nsp13292A292SGctTct22P.1.120.000968
ORF1ab/nsp13292A292SGctTct22P.1.170.000324
ORF1ab/nsp13292A292SGctTct22Q.30.00029
ORF1ab/nsp13292A292SGctTct11A.20.000662
ORF1ab/nsp13292A292SGctTct11AK.10.012658
ORF1ab/nsp13292A292TGctAct11AP.10.001502
ORF1ab/nsp13292A292VgCtgTt11AY.1000.000046
ORF1ab/nsp13292A292VgCtgTt11AY.1130.000142
ORF1ab/nsp13292A292SGctTct11AY.1210.000135
ORF1ab/nsp13292A292AgcTgcC11AY.160.00038
ORF1ab/nsp13292A292del1Gct-ct11AY.250.000006
ORF1ab/nsp13292A292TGcTAcA11AY.250.000006
ORF1ab/nsp13292A292AgcTgcG11AY.260.000028
ORF1ab/nsp13292A292SGctTct11AY.29.10.000221
ORF1ab/nsp13292A292del1Gct-ct11AY.30.00001
ORF1ab/nsp13292A292VgCtgTt11AY.30.00001
ORF1ab/nsp13292A292AgcTgcC11AY.300.000396
ORF1ab/nsp13292A292AgcTgcC11AY.34.10.00051
ORF1ab/nsp13292A292PGcTCcA11AY.360.000148
ORF1ab/nsp13292A292delGCT---11AY.40.000002
ORF1ab/nsp13292A292SGctTct11AY.4.20.000022
ORF1ab/nsp13292A292SGctTct11AY.4.2.10.000149
ORF1ab/nsp13292A292PGcTCcG11AY.420.00004
ORF1ab/nsp13292A292delGCT---11AY.420.00004
ORF1ab/nsp13292A292AgcTgcC11AY.420.00004
ORF1ab/nsp13292A292del1Gct-ct11AY.430.000004
ORF1ab/nsp13292A292PGctCct11AY.440.000006
ORF1ab/nsp13292A292AgcTgcC11AY.460.000104
ORF1ab/nsp13292A292SGctTct11AY.46.30.000934
ORF1ab/nsp13292A292del1Gct-ct11AY.46.60.000072
ORF1ab/nsp13292A292SGctTct11AY.710.000475
ORF1ab/nsp13292A292SGctTct11AY.750.000056
ORF1ab/nsp13292A292VgCtgTt11AY.840.000437
ORF1ab/nsp13292A292AgcTgcC11AY.880.000884
ORF1ab/nsp13292A292SGctTct11AY.90.000068
ORF1ab/nsp13292A292SGctTct11AY.9.10.000084
ORF1ab/nsp13292A292VgCtgTt11AY.9.20.000037
ORF1ab/nsp13292A292delGCT---11AY.990.001049
ORF1ab/nsp13292A292SGctTct11AZ.30.00152
ORF1ab/nsp13292A292AgcTgcC11B0.000128
ORF1ab/nsp13292A292PGctCct11B.10.000009
ORF1ab/nsp13292A292VgCtgTt11B.1.10.000018
ORF1ab/nsp13292A292TGctAct11B.1.1.2140.000055
ORF1ab/nsp13292A292AgcTgcC11B.1.1.280.000311
ORF1ab/nsp13292A292TGctAct11B.1.1.2940.001266
ORF1ab/nsp13292A292SGctTct11B.1.1.4120.007634
ORF1ab/nsp13292A292SGctTct11B.1.1.5190.00004
ORF1ab/nsp13292A292AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp13292A292GgCtgGt11B.1.1.700.000341
ORF1ab/nsp13292A292AgcTgcA11B.1.1.830.00271
ORF1ab/nsp13292A292SGctTct11B.1.1390.000733
ORF1ab/nsp13292A292VgCtgTt11B.1.1600.000031
ORF1ab/nsp13292A292VgCtgTt11B.1.1770.000013
ORF1ab/nsp13292A292SGctTct11B.1.177.330.001645
ORF1ab/nsp13292A292SGctTct11B.1.177.540.000606
ORF1ab/nsp13292A292del1gcTgc-11B.1.20.000009
ORF1ab/nsp13292A292SGctTct11B.1.2140.003663
ORF1ab/nsp13292A292SGctTct11B.1.2340.000132
ORF1ab/nsp13292A292AgcTgcA11B.1.2430.00007
ORF1ab/nsp13292A292TGctAct11B.1.258.50.008772
ORF1ab/nsp13292A292SGctTct11B.1.36.180.00042
ORF1ab/nsp13292A292AgcTgcC11B.1.362.20.004717
ORF1ab/nsp13292A292SGctTct11B.1.400.019608
ORF1ab/nsp13292A292VgCtgTt11B.1.4160.001269
ORF1ab/nsp13292A292delGCT---11B.1.4270.00005
ORF1ab/nsp13292A292SGctTct11B.1.466.20.000391
ORF1ab/nsp13292A292SGctTct11B.1.4700.001404
ORF1ab/nsp13292A292SGctTct11B.1.4790.038462
ORF1ab/nsp13292A292AgcTgcC11B.1.5250.000113
ORF1ab/nsp13292A292SGctTct11B.1.5260.000024
ORF1ab/nsp13292A292SGctTct11B.1.5760.000907
ORF1ab/nsp13292A292VgCtgTt11B.1.5950.000261
ORF1ab/nsp13292A292VgCtgTt11B.1.5960.000087
ORF1ab/nsp13292A292AgcTgcC11B.1.6020.006536
ORF1ab/nsp13292A292AgcTgcC11B.1.617.10.000129
ORF1ab/nsp13292A292SGctTct11B.1.617.10.000129
ORF1ab/nsp13292A292delGCT---11B.1.617.20.000004
ORF1ab/nsp13292A292TGctAct11B.1.617.20.000004
ORF1ab/nsp13292A292VgCtgTt11B.1.6210.000089
ORF1ab/nsp13292A292del1Gct-ct11B.1.6210.000089
ORF1ab/nsp13292A292TGctAct11B.1.6370.000073
ORF1ab/nsp13292A292SGctTct11B.40.002208
ORF1ab/nsp13292A292TGctAct11C.230.005814
ORF1ab/nsp13292A292SGctTct11C.370.000116
ORF1ab/nsp13292A292SGctTct11N.50.001767
ORF1ab/nsp13292A292TGctAct11P.10.000016
ORF1ab/nsp13292A292AgcTgcC11P.10.000016
ORF1ab/nsp13292A292TGctAct11P.1.140.000048
ORF1ab/nsp13292A292VgCtgTt11P.1.140.000048
ORF1ab/nsp13292A292AgcTgcC11P.70.004367
ORF1ab/nsp13292A292delGCT---11Q.20.000613
ORF1ab/nsp13292A292AgcTgcA11R.10.00009