CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 291

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13291F291LF5615LnonsynttTttG118990.83898317107-17109
ORF1ab/nsp13291F291LF5615LnonsynTttCtt118170.14406817107-17109
ORF1ab/nsp13291F291LF5615LnonsynttTttA11820.016949217107-17109
ORF1ab/nsp13291F291FF5615FsynttTttC7272117107-17109
ORF1ab/nsp13291F291CF5615CnonsyntTttGt69680.98550717107-17109
ORF1ab/nsp13291F291CF5615CnonsyntTTtGC6910.014492817107-17109
ORF1ab/nsp13291F291VF5615VnonsynTttGtt3535117107-17109
ORF1ab/nsp13291F291YF5615YnonsyntTttAt3434117107-17109
ORF1ab/nsp13291F291delF5615deldelTTT---1818117107-17109
ORF1ab/nsp13291F291IF5615InonsynTttAtt77117107-17109
ORF1ab/nsp13291F291SF5615SnonsyntTttCt33117107-17109
ORF1ab/nsp13291F291del1F5615del1delTtt-tt22117107-17109
ORF1ab/nsp13291F291PF5615PnonsynTTtCCt11117107-17109
ORF1ab/nsp13291F291QF5615QnonsynTTTCAA11117107-17109

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13291F291LttTttG99118All0.000019
ORF1ab/nsp13291F291LTttCtt17118All0.000003
ORF1ab/nsp13291F291LttTttA2118All0
ORF1ab/nsp13291F291FttTttC7272All0.000014
ORF1ab/nsp13291F291CtTttGt6869All0.000013
ORF1ab/nsp13291F291CtTTtGC169All0
ORF1ab/nsp13291F291VTttGtt3535All0.000007
ORF1ab/nsp13291F291YtTttAt3434All0.000007
ORF1ab/nsp13291F291LttTttG2629B.1.1.70.000023
ORF1ab/nsp13291F291LTttCtt329B.1.1.70.000003
ORF1ab/nsp13291F291LttTttG2128B.1.1770.000277
ORF1ab/nsp13291F291LTttCtt728B.1.1770.000092
ORF1ab/nsp13291F291YtTttAt2525B.1.5940.78125
ORF1ab/nsp13291F291FttTttC2020Q.10.002527
ORF1ab/nsp13291F291delTTT---1818All0.000003
ORF1ab/nsp13291F291CtTttGt1818B.1.1.70.000016
ORF1ab/nsp13291F291FttTttC1111B.1.1.70.00001
ORF1ab/nsp13291F291VTttGtt1010B.1.1.70.000009
ORF1ab/nsp13291F291VTttGtt99B.1.5250.001018
ORF1ab/nsp13291F291VTttGtt88B.1.4290.000188
ORF1ab/nsp13291F291FttTttC88B.1.617.20.00003
ORF1ab/nsp13291F291ITttAtt77All0.000001
ORF1ab/nsp13291F291CtTttGt77AY.290.00011
ORF1ab/nsp13291F291LttTttG77AY.99.20.000645
ORF1ab/nsp13291F291LttTttG67P.10.000095
ORF1ab/nsp13291F291LTttCtt17P.10.000016
ORF1ab/nsp13291F291FttTttC66AY.1030.000037
ORF1ab/nsp13291F291delTTT---55AY.250.00003
ORF1ab/nsp13291F291CtTttGt55AY.250.00003
ORF1ab/nsp13291F291CtTttGt55AY.30.00005
ORF1ab/nsp13291F291FttTttC55B.10.000046
ORF1ab/nsp13291F291FttTttC44AY.20.001425
ORF1ab/nsp13291F291FttTttC44AY.40.000006
ORF1ab/nsp13291F291LttTttG34AY.440.000018
ORF1ab/nsp13291F291LTttCtt14AY.440.000006
ORF1ab/nsp13291F291ITttAtt44B.10.000037
ORF1ab/nsp13291F291LttTttG44B.1.6210.000354
ORF1ab/nsp13291F291StTttCt33All0.000001
ORF1ab/nsp13291F291LttTttG33AY.50.000062
ORF1ab/nsp13291F291LttTttA23B.10.000018
ORF1ab/nsp13291F291LTttCtt13B.10.000009
ORF1ab/nsp13291F291LttTttG33B.1.10.000054
ORF1ab/nsp13291F291CtTttGt33B.1.1.2140.000166
ORF1ab/nsp13291F291LttTttG33B.1.575.10.007317
ORF1ab/nsp13291F291CtTttGt33B.1.617.20.000011
ORF1ab/nsp13291F291CtTttGt33B.1.6210.000266
ORF1ab/nsp13291F291del1Ttt-tt22All0
ORF1ab/nsp13291F291LTttCtt12AY.250.000006
ORF1ab/nsp13291F291LttTttG12AY.250.000006
ORF1ab/nsp13291F291LttTttG22AY.40.000003
ORF1ab/nsp13291F291delTTT---22AY.40.000003
ORF1ab/nsp13291F291delTTT---22AY.430.000009
ORF1ab/nsp13291F291CtTttGt22AY.46.60.000144
ORF1ab/nsp13291F291YtTttAt22AY.470.000062
ORF1ab/nsp13291F291LttTttG22AY.9.20.000073
ORF1ab/nsp13291F291delTTT---22B.10.000018
ORF1ab/nsp13291F291FttTttC22B.1.1.2160.001781
ORF1ab/nsp13291F291CtTttGt22B.1.1.2220.000408
ORF1ab/nsp13291F291CtTttGt22B.1.1.2840.000215
ORF1ab/nsp13291F291delTTT---22B.1.1.70.000002
ORF1ab/nsp13291F291CtTttGt22B.1.2340.000264
ORF1ab/nsp13291F291LttTttG22B.1.3510.000059
ORF1ab/nsp13291F291YtTttAt22B.1.4460.04
ORF1ab/nsp13291F291FttTttC22P.10.000032
ORF1ab/nsp13291F291PTTtCCt11All0
ORF1ab/nsp13291F291QTTTCAA11All0
ORF1ab/nsp13291F291CtTttGt11AY.1030.000006
ORF1ab/nsp13291F291FttTttC11AY.1170.000085
ORF1ab/nsp13291F291FttTttC11AY.1180.000063
ORF1ab/nsp13291F291LttTttG11AY.200.000039
ORF1ab/nsp13291F291FttTttC11AY.250.000006
ORF1ab/nsp13291F291FttTttC11AY.30.00001
ORF1ab/nsp13291F291LTttCtt11AY.30.00001
ORF1ab/nsp13291F291CtTTtGC11AY.360.000148
ORF1ab/nsp13291F291delTTT---11AY.420.00004
ORF1ab/nsp13291F291CtTttGt11AY.430.000004
ORF1ab/nsp13291F291VTttGtt11AY.440.000006
ORF1ab/nsp13291F291FttTttC11AY.460.000104
ORF1ab/nsp13291F291LttTttG11AY.46.30.000934
ORF1ab/nsp13291F291FttTttC11AY.470.000031
ORF1ab/nsp13291F291VTttGtt11AY.470.000031
ORF1ab/nsp13291F291CtTttGt11AY.470.000031
ORF1ab/nsp13291F291FttTttC11AY.5.40.000277
ORF1ab/nsp13291F291CtTttGt11AY.520.000814
ORF1ab/nsp13291F291LttTttG11AY.530.000288
ORF1ab/nsp13291F291LttTttG11AY.700.000209
ORF1ab/nsp13291F291LttTttG11AY.940.000443
ORF1ab/nsp13291F291delTTT---11AY.990.001049
ORF1ab/nsp13291F291VTttGtt11B0.000128
ORF1ab/nsp13291F291StTttCt11B.10.000009
ORF1ab/nsp13291F291del1Ttt-tt11B.10.000009
ORF1ab/nsp13291F291VTttGtt11B.10.000009
ORF1ab/nsp13291F291CtTttGt11B.10.000009
ORF1ab/nsp13291F291CtTttGt11B.1.10.000018
ORF1ab/nsp13291F291LttTttG11B.1.1.280.000311
ORF1ab/nsp13291F291VTttGtt11B.1.1.2840.000107
ORF1ab/nsp13291F291YtTttAt11B.1.1.3180.000302
ORF1ab/nsp13291F291LttTttG11B.1.1.3180.000302
ORF1ab/nsp13291F291CtTttGt11B.1.1.4340.000349
ORF1ab/nsp13291F291FttTttC11B.1.1.500.000679
ORF1ab/nsp13291F291CtTttGt11B.1.1.5190.00004
ORF1ab/nsp13291F291LttTttG11B.1.1.890.006061
ORF1ab/nsp13291F291CtTttGt11B.1.1600.000031
ORF1ab/nsp13291F291del1Ttt-tt11B.1.1770.000013
ORF1ab/nsp13291F291YtTttAt11B.1.1770.000013
ORF1ab/nsp13291F291ITttAtt11B.1.1770.000013
ORF1ab/nsp13291F291FttTttC11B.1.1770.000013
ORF1ab/nsp13291F291PTTtCCt11B.1.1770.000013
ORF1ab/nsp13291F291StTttCt11B.1.1770.000013
ORF1ab/nsp13291F291LttTttG11B.1.177.100.000878
ORF1ab/nsp13291F291LttTttG11B.1.177.310.011494
ORF1ab/nsp13291F291LTttCtt11B.1.177.750.001041
ORF1ab/nsp13291F291ITttAtt11B.1.20.000009
ORF1ab/nsp13291F291CtTttGt11B.1.20.000009
ORF1ab/nsp13291F291FttTttC11B.1.20.000009
ORF1ab/nsp13291F291YtTttAt11B.1.20.000009
ORF1ab/nsp13291F291ITttAtt11B.1.2340.000132
ORF1ab/nsp13291F291CtTttGt11B.1.2400.000216
ORF1ab/nsp13291F291VTttGtt11B.1.2580.000067
ORF1ab/nsp13291F291VTttGtt11B.1.3110.000275
ORF1ab/nsp13291F291CtTttGt11B.1.4260.001009
ORF1ab/nsp13291F291delTTT---11B.1.4270.00005
ORF1ab/nsp13291F291LttTttG11B.1.5250.000113
ORF1ab/nsp13291F291CtTttGt11B.1.5250.000113
ORF1ab/nsp13291F291LttTttG11B.1.5260.000024
ORF1ab/nsp13291F291LttTttG11B.1.5750.000303
ORF1ab/nsp13291F291LttTttG11B.1.617.20.000004
ORF1ab/nsp13291F291delTTT---11B.1.617.20.000004
ORF1ab/nsp13291F291YtTttAt11B.1.617.20.000004
ORF1ab/nsp13291F291QTTTCAA11B.1.6210.000089
ORF1ab/nsp13291F291LttTttG11B.1.621.10.000506
ORF1ab/nsp13291F291LttTttG11B.1.6230.000536
ORF1ab/nsp13291F291VTttGtt11B.1.6360.006711
ORF1ab/nsp13291F291CtTttGt11B.1.6370.000073
ORF1ab/nsp13291F291CtTttGt11C.230.005814
ORF1ab/nsp13291F291YtTttAt11C.36.30.000567
ORF1ab/nsp13291F291CtTttGt11P.10.000016
ORF1ab/nsp13291F291LTttCtt11Q.10.000126
ORF1ab/nsp13291F291StTttCt11Q.10.000126
ORF1ab/nsp13291F291delTTT---11Q.20.000613