CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 281

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13281Q281QQ5605QsyncaGcaA19921992117077-17079
ORF1ab/nsp13281Q281RQ5605RnonsyncAgcGg219219117077-17079
ORF1ab/nsp13281Q281HQ5605HnonsyncaGcaT7777117077-17079
ORF1ab/nsp13281Q281XQ5605XnonsynCagTag17140.82352917077-17079
ORF1ab/nsp13281Q281XQ5605XnonsynCaGTaA1730.17647117077-17079
ORF1ab/nsp13281Q281delQ5605deldelCAG---1313117077-17079
ORF1ab/nsp13281Q281LQ5605LnonsyncAgcTg1180.72727317077-17079
ORF1ab/nsp13281Q281LQ5605LnonsynCAGTTA1110.090909117077-17079
ORF1ab/nsp13281Q281LQ5605LnonsyncAGcTA1110.090909117077-17079
ORF1ab/nsp13281Q281LQ5605LnonsynCAgTTg1110.090909117077-17079
ORF1ab/nsp13281Q281PQ5605PnonsyncAgcCg950.55555617077-17079
ORF1ab/nsp13281Q281PQ5605PnonsyncAGcCA940.44444417077-17079
ORF1ab/nsp13281Q281KQ5605KnonsynCagAag760.85714317077-17079
ORF1ab/nsp13281Q281KQ5605KnonsynCaGAaA710.14285717077-17079
ORF1ab/nsp13281Q281EQ5605EnonsynCagGag44117077-17079
ORF1ab/nsp13281Q281del2Q5605del2delCAg--g430.7517077-17079
ORF1ab/nsp13281Q281del1Q5605del1delcaGca-430.7517077-17079
ORF1ab/nsp13281Q281SQ5605SnonsynCAgTCg420.517077-17079
ORF1ab/nsp13281Q281SQ5605SnonsynCAGTCA420.517077-17079
ORF1ab/nsp13281Q281del1Q5605del1delCaGTa-410.2517077-17079
ORF1ab/nsp13281Q281del2Q5605del2delCAG--A410.2517077-17079
ORF1ab/nsp13281Q281IQ5605InonsynCAGATA11117077-17079

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13281Q281QcaGcaA19921992All0.000381
ORF1ab/nsp13281Q281QcaGcaA13291329B.1.1.5190.052776
ORF1ab/nsp13281Q281RcAgcGg219219All0.000042
ORF1ab/nsp13281Q281QcaGcaA192192B.1.1.70.000172
ORF1ab/nsp13281Q281RcAgcGg112112B.1.1.3010.132075
ORF1ab/nsp13281Q281QcaGcaA9696AY.440.000584
ORF1ab/nsp13281Q281HcaGcaT7777All0.000015
ORF1ab/nsp13281Q281QcaGcaA5454B.1.4290.001271
ORF1ab/nsp13281Q281RcAgcGg3232B.1.2340.004222
ORF1ab/nsp13281Q281HcaGcaT2929B.1.6010.878788
ORF1ab/nsp13281Q281RcAgcGg2727B.1.1.70.000024
ORF1ab/nsp13281Q281QcaGcaA2323AY.40.000036
ORF1ab/nsp13281Q281QcaGcaA2323AY.4.20.000499
ORF1ab/nsp13281Q281QcaGcaA2222B.1.617.20.000083
ORF1ab/nsp13281Q281QcaGcaA1818B.10.000165
ORF1ab/nsp13281Q281XCagTag1417All0.000003
ORF1ab/nsp13281Q281XCaGTaA317All0.000001
ORF1ab/nsp13281Q281QcaGcaA1515AY.250.00009
ORF1ab/nsp13281Q281delCAG---1313All0.000002
ORF1ab/nsp13281Q281LcAgcTg811All0.000002
ORF1ab/nsp13281Q281LCAgTTg111All0
ORF1ab/nsp13281Q281LCAGTTA111All0
ORF1ab/nsp13281Q281LcAGcTA111All0
ORF1ab/nsp13281Q281QcaGcaA1111AY.1020.000292
ORF1ab/nsp13281Q281QcaGcaA1111P.10.000173
ORF1ab/nsp13281Q281QcaGcaA1010AY.1000.00046
ORF1ab/nsp13281Q281QcaGcaA1010AY.4.50.001075
ORF1ab/nsp13281Q281QcaGcaA1010B.1.10.000181
ORF1ab/nsp13281Q281QcaGcaA1010B.1.1.4640.014728
ORF1ab/nsp13281Q281QcaGcaA1010B.1.20.000088
ORF1ab/nsp13281Q281QcaGcaA1010B.1.5780.178571
ORF1ab/nsp13281Q281QcaGcaA1010B.1.619.10.006414
ORF1ab/nsp13281Q281PcAgcCg59All0.000001
ORF1ab/nsp13281Q281PcAGcCA49All0.000001
ORF1ab/nsp13281Q281QcaGcaA99AY.1190.000318
ORF1ab/nsp13281Q281QcaGcaA99AY.30.00009
ORF1ab/nsp13281Q281QcaGcaA99AY.39.10.000357
ORF1ab/nsp13281Q281RcAgcGg99B.1.20.000079
ORF1ab/nsp13281Q281HcaGcaT88B.1.20.00007
ORF1ab/nsp13281Q281HcaGcaT88B.1.5260.000188
ORF1ab/nsp13281Q281KCagAag67All0.000001
ORF1ab/nsp13281Q281KCaGAaA17All0
ORF1ab/nsp13281Q281HcaGcaT77B.1.1600.000218
ORF1ab/nsp13281Q281QcaGcaA66AY.1130.000854
ORF1ab/nsp13281Q281QcaGcaA66AY.1210.000812
ORF1ab/nsp13281Q281QcaGcaA66B.1.4270.000303
ORF1ab/nsp13281Q281PcAgcCg350.166667
ORF1ab/nsp13281Q281PcAGcCA250.111111
ORF1ab/nsp13281Q281RcAgcGg55AY.40.000008
ORF1ab/nsp13281Q281QcaGcaA55B.1.160.260.012107
ORF1ab/nsp13281Q281RcAgcGg55B.1.2430.000348
ORF1ab/nsp13281Q281QcaGcaA440.222222
ORF1ab/nsp13281Q281XCaGTaA240.111111
ORF1ab/nsp13281Q281XCagTag240.111111
ORF1ab/nsp13281Q281LCAGTTA140.055556
ORF1ab/nsp13281Q281LcAGcTA140.055556
ORF1ab/nsp13281Q281LCAgTTg140.055556
ORF1ab/nsp13281Q281LcAgcTg140.055556
ORF1ab/nsp13281Q281ECagGag44All0.000001
ORF1ab/nsp13281Q281del1caGca-34All0.000001
ORF1ab/nsp13281Q281del2CAg--g34All0.000001
ORF1ab/nsp13281Q281SCAGTCA24All0
ORF1ab/nsp13281Q281SCAgTCg24All0
ORF1ab/nsp13281Q281del1CaGTa-14All0
ORF1ab/nsp13281Q281del2CAG--A14All0
ORF1ab/nsp13281Q281QcaGcaA44AY.430.000018
ORF1ab/nsp13281Q281HcaGcaT44B0.000511
ORF1ab/nsp13281Q281RcAgcGg44B.10.000037
ORF1ab/nsp13281Q281QcaGcaA33A.2.50.001497
ORF1ab/nsp13281Q281QcaGcaA33AY.260.000085
ORF1ab/nsp13281Q281QcaGcaA33AY.290.000047
ORF1ab/nsp13281Q281del1caGca-23AY.440.000012
ORF1ab/nsp13281Q281del1CaGTa-13AY.440.000006
ORF1ab/nsp13281Q281HcaGcaT33B.10.000027
ORF1ab/nsp13281Q281RcAgcGg33B.1.10.000054
ORF1ab/nsp13281Q281KCagAag33B.1.1.70.000003
ORF1ab/nsp13281Q281LcAgcTg33B.1.1.70.000003
ORF1ab/nsp13281Q281QcaGcaA33B.1.2580.0002
ORF1ab/nsp13281Q281ECagGag33B.1.617.20.000011
ORF1ab/nsp13281Q281SCAgTCg120.055556
ORF1ab/nsp13281Q281SCAGTCA120.055556
ORF1ab/nsp13281Q281RcAgcGg22A.10.000564
ORF1ab/nsp13281Q281QcaGcaA22AY.1030.000012
ORF1ab/nsp13281Q281RcAgcGg22AY.290.000032
ORF1ab/nsp13281Q281QcaGcaA22AY.390.000049
ORF1ab/nsp13281Q281HcaGcaT22AY.40.000003
ORF1ab/nsp13281Q281LcAgcTg22AY.40.000003
ORF1ab/nsp13281Q281QcaGcaA22AY.750.000112
ORF1ab/nsp13281Q281XCagTag22B.1.10.000036
ORF1ab/nsp13281Q281QcaGcaA22B.1.1.1530.002191
ORF1ab/nsp13281Q281QcaGcaA22B.1.1.2140.000111
ORF1ab/nsp13281Q281QcaGcaA22B.1.1.2910.001485
ORF1ab/nsp13281Q281RcAgcGg22B.1.1.3180.000604
ORF1ab/nsp13281Q281del2CAg--g22B.1.1.70.000002
ORF1ab/nsp13281Q281delCAG---22B.1.1.70.000002
ORF1ab/nsp13281Q281RcAgcGg22B.1.1390.001466
ORF1ab/nsp13281Q281QcaGcaA22B.1.1770.000026
ORF1ab/nsp13281Q281QcaGcaA22B.1.2210.000142
ORF1ab/nsp13281Q281KCaGAaA12B.1.2210.000071
ORF1ab/nsp13281Q281SCAgTCg12B.1.2210.000071
ORF1ab/nsp13281Q281SCAGTCA12B.1.2210.000071
ORF1ab/nsp13281Q281KCagAag12B.1.2210.000071
ORF1ab/nsp13281Q281PcAGcCA12B.1.2210.000071
ORF1ab/nsp13281Q281XCaGTaA12B.1.2210.000071
ORF1ab/nsp13281Q281XCagTag12B.1.2210.000071
ORF1ab/nsp13281Q281PcAgcCg12B.1.2210.000071
ORF1ab/nsp13281Q281HcaGcaT22B.1.2430.000139
ORF1ab/nsp13281Q281QcaGcaA22B.1.5750.000607
ORF1ab/nsp13281Q281RcAgcGg22B.1.617.20.000008
ORF1ab/nsp13281Q281QcaGcaA22C.370.000232
ORF1ab/nsp13281Q281HcaGcaT11A0.000387
ORF1ab/nsp13281Q281PcAgcCg11A0.000387
ORF1ab/nsp13281Q281ICAGATA11All0
ORF1ab/nsp13281Q281QcaGcaA11AY.10.000396
ORF1ab/nsp13281Q281QcaGcaA11AY.1010.00049
ORF1ab/nsp13281Q281RcAgcGg11AY.1020.000027
ORF1ab/nsp13281Q281RcAgcGg11AY.1030.000006
ORF1ab/nsp13281Q281QcaGcaA11AY.1180.000063
ORF1ab/nsp13281Q281RcAgcGg11AY.1180.000063
ORF1ab/nsp13281Q281HcaGcaT11AY.1210.000135
ORF1ab/nsp13281Q281QcaGcaA11AY.140.000088
ORF1ab/nsp13281Q281del2CAG--A11AY.200.000039
ORF1ab/nsp13281Q281HcaGcaT11AY.250.000006
ORF1ab/nsp13281Q281HcaGcaT11AY.30.00001
ORF1ab/nsp13281Q281QcaGcaA11AY.340.000097
ORF1ab/nsp13281Q281XCagTag11AY.390.000025
ORF1ab/nsp13281Q281delCAG---11AY.420.00004
ORF1ab/nsp13281Q281KCagAag11AY.430.000004
ORF1ab/nsp13281Q281HcaGcaT11AY.430.000004
ORF1ab/nsp13281Q281delCAG---11AY.430.000004
ORF1ab/nsp13281Q281RcAgcGg11AY.440.000006
ORF1ab/nsp13281Q281ICAGATA11AY.440.000006
ORF1ab/nsp13281Q281PcAGcCA11AY.46.20.000635
ORF1ab/nsp13281Q281QcaGcaA11AY.46.60.000072
ORF1ab/nsp13281Q281QcaGcaA11AY.50.000021
ORF1ab/nsp13281Q281QcaGcaA11AY.5.30.000337
ORF1ab/nsp13281Q281QcaGcaA11AY.580.000907
ORF1ab/nsp13281Q281QcaGcaA11AY.610.000105
ORF1ab/nsp13281Q281QcaGcaA11AY.670.000464
ORF1ab/nsp13281Q281delCAG---11AY.750.000056
ORF1ab/nsp13281Q281XCagTag11AY.750.000056
ORF1ab/nsp13281Q281QcaGcaA11AY.9.20.000037
ORF1ab/nsp13281Q281del2CAg--g11AY.98.10.000048
ORF1ab/nsp13281Q281HcaGcaT11AY.98.10.000048
ORF1ab/nsp13281Q281delCAG---11AY.990.001049
ORF1ab/nsp13281Q281delCAG---11B.10.000009
ORF1ab/nsp13281Q281XCagTag11B.1.1.10.000327
ORF1ab/nsp13281Q281QcaGcaA11B.1.1.1610.003534
ORF1ab/nsp13281Q281RcAgcGg11B.1.1.1890.001513
ORF1ab/nsp13281Q281HcaGcaT11B.1.1.2310.003096
ORF1ab/nsp13281Q281HcaGcaT11B.1.1.2320.001815
ORF1ab/nsp13281Q281XCagTag11B.1.1.250.000569
ORF1ab/nsp13281Q281QcaGcaA11B.1.1.2630.001558
ORF1ab/nsp13281Q281QcaGcaA11B.1.1.2840.000107
ORF1ab/nsp13281Q281RcAgcGg11B.1.1.3060.000438
ORF1ab/nsp13281Q281QcaGcaA11B.1.1.3720.000689
ORF1ab/nsp13281Q281RcAgcGg11B.1.1.3770.001381
ORF1ab/nsp13281Q281QcaGcaA11B.1.1.4200.001006
ORF1ab/nsp13281Q281ECagGag11B.1.1.4320.001266
ORF1ab/nsp13281Q281del1caGca-11B.1.1.70.000001
ORF1ab/nsp13281Q281QcaGcaA11B.1.1600.000031
ORF1ab/nsp13281Q281RcAgcGg11B.1.1770.000013
ORF1ab/nsp13281Q281LcAgcTg11B.1.1770.000013
ORF1ab/nsp13281Q281delCAG---11B.1.1770.000013
ORF1ab/nsp13281Q281delCAG---11B.1.177.150.000631
ORF1ab/nsp13281Q281HcaGcaT11B.1.177.210.000076
ORF1ab/nsp13281Q281QcaGcaA11B.1.177.570.000281
ORF1ab/nsp13281Q281QcaGcaA11B.1.177.650.000665
ORF1ab/nsp13281Q281QcaGcaA11B.1.177.70.000165
ORF1ab/nsp13281Q281RcAgcGg11B.1.177.810.000189
ORF1ab/nsp13281Q281QcaGcaA11B.1.177.860.000183
ORF1ab/nsp13281Q281QcaGcaA11B.1.177.870.000728
ORF1ab/nsp13281Q281delCAG---11B.1.20.000009
ORF1ab/nsp13281Q281XCagTag11B.1.20.000009
ORF1ab/nsp13281Q281QcaGcaA11B.1.2220.001692
ORF1ab/nsp13281Q281RcAgcGg11B.1.2320.000537
ORF1ab/nsp13281Q281QcaGcaA11B.1.2430.00007
ORF1ab/nsp13281Q281QcaGcaA11B.1.258.170.000104
ORF1ab/nsp13281Q281RcAgcGg11B.1.3510.00003
ORF1ab/nsp13281Q281QcaGcaA11B.1.3510.00003
ORF1ab/nsp13281Q281QcaGcaA11B.1.360.000146
ORF1ab/nsp13281Q281QcaGcaA11B.1.36.100.004785
ORF1ab/nsp13281Q281RcAgcGg11B.1.36.390.002217
ORF1ab/nsp13281Q281HcaGcaT11B.1.3690.000285
ORF1ab/nsp13281Q281QcaGcaA11B.1.4000.000429
ORF1ab/nsp13281Q281delCAG---11B.1.4270.00005
ORF1ab/nsp13281Q281HcaGcaT11B.1.5250.000113
ORF1ab/nsp13281Q281KCagAag11B.1.5250.000113
ORF1ab/nsp13281Q281QcaGcaA11B.1.5260.000024
ORF1ab/nsp13281Q281XCagTag11B.1.5960.000087
ORF1ab/nsp13281Q281HcaGcaT11B.1.617.10.000129
ORF1ab/nsp13281Q281HcaGcaT11B.1.617.20.000004
ORF1ab/nsp13281Q281LcAgcTg11B.1.617.20.000004
ORF1ab/nsp13281Q281XCagTag11B.1.617.20.000004
ORF1ab/nsp13281Q281delCAG---11B.1.617.20.000004
ORF1ab/nsp13281Q281QcaGcaA11B.1.6210.000089
ORF1ab/nsp13281Q281XCagTag11B.1.780.008547
ORF1ab/nsp13281Q281QcaGcaA11B.30.000831
ORF1ab/nsp13281Q281delCAG---11B.340.013699
ORF1ab/nsp13281Q281QcaGcaA11B.400.000364
ORF1ab/nsp13281Q281HcaGcaT11B.6.30.026316
ORF1ab/nsp13281Q281QcaGcaA11D.20.000075
ORF1ab/nsp13281Q281QcaGcaA11N.30.005814
ORF1ab/nsp13281Q281XCagTag11P.10.000016
ORF1ab/nsp13281Q281QcaGcaA11P.1.140.000048
ORF1ab/nsp13281Q281QcaGcaA11Q.10.000126