CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 278 | S278S | S5602S | syn | tcT | tcC | 763 | 693 | 0.908257 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278S | S5602S | syn | tcT | tcA | 763 | 47 | 0.061599 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278S | S5602S | syn | tcT | tcG | 763 | 23 | 0.0301442 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278F | S5602F | nonsyn | tCt | tTt | 186 | 182 | 0.978495 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278F | S5602F | nonsyn | tCT | tTC | 186 | 4 | 0.0215054 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278A | S5602A | nonsyn | Tct | Gct | 72 | 71 | 0.986111 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278A | S5602A | nonsyn | TcT | GcG | 72 | 1 | 0.0138889 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278del | S5602del | del | TCT | --- | 16 | 16 | 1 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278T | S5602T | nonsyn | Tct | Act | 15 | 15 | 1 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278Y | S5602Y | nonsyn | tCt | tAt | 15 | 15 | 1 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278P | S5602P | nonsyn | Tct | Cct | 11 | 10 | 0.909091 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278P | S5602P | nonsyn | TcT | CcC | 11 | 1 | 0.0909091 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278E | S5602E | nonsyn | TCT | GAG | 3 | 3 | 1 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278C | S5602C | nonsyn | tCt | tGt | 3 | 2 | 0.666667 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278L | S5602L | nonsyn | tCT | tTA | 3 | 1 | 0.333333 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278L | S5602L | nonsyn | TCt | CTt | 3 | 1 | 0.333333 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278L | S5602L | nonsyn | TCT | CTC | 3 | 1 | 0.333333 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278C | S5602C | nonsyn | tCT | tGC | 3 | 1 | 0.333333 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278del2 | S5602del2 | del | tCT | t-- | 2 | 2 | 1 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278X | S5602X | nonsyn | tCT | tAG | 2 | 1 | 0.5 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278X | S5602X | nonsyn | tCT | tAA | 2 | 1 | 0.5 | 17068-17070 |
ORF1ab/nsp13 | 278 | S278D | S5602D | nonsyn | TCt | GAt | 1 | 1 | 1 | 17068-17070 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 693 | 763 | All | 0.000133 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 47 | 763 | All | 0.000009 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 23 | 763 | All | 0.000004 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 233 | 236 | B.1.617.2 | 0.000877 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 2 | 236 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 1 | 236 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 182 | 186 | All | 0.000035 |
ORF1ab/nsp13 | 278 | S278F | tCT | tTC | 4 | 186 | All | 0.000001 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 90 | 90 | B.1 | 0.000824 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 85 | 85 | B.1.243 | 0.005915 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 51 | 78 | B.1.1.7 | 0.000046 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 16 | 78 | B.1.1.7 | 0.000014 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 11 | 78 | B.1.1.7 | 0.00001 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 71 | 72 | All | 0.000014 |
ORF1ab/nsp13 | 278 | S278A | TcT | GcG | 1 | 72 | All | 0 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 50 | 50 | B.1.348 | 0.909091 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 49 | 49 | AY.4 | 0.000076 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 28 | 32 | AY.43 | 0.000124 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 4 | 32 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 26 | 26 | AY.103 | 0.000161 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 16 | 26 | B.1.2 | 0.000141 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 10 | 26 | B.1.2 | 0.000088 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 22 | 22 | B.1.1 | 0.000399 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 16 | 16 | All | 0.000003 |
ORF1ab/nsp13 | 278 | S278T | Tct | Act | 15 | 15 | All | 0.000003 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 15 | 15 | All | 0.000003 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 10 | 11 | All | 0.000002 |
ORF1ab/nsp13 | 278 | S278P | TcT | CcC | 1 | 11 | All | 0 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 6 | 11 | B.1.1.214 | 0.000333 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 5 | 11 | B.1.1.214 | 0.000277 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 9 | 10 | B.1.177 | 0.000119 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 1 | 10 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 5 | 9 | 0.277778 | |
ORF1ab/nsp13 | 278 | S278F | tCT | tTC | 4 | 9 | 0.222222 | |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 8 | 9 | AY.39 | 0.000198 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 1 | 9 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 7 | 7 | B.1.1.317 | 0.002882 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 4 | 7 | B.1.160 | 0.000125 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 3 | 7 | B.1.160 | 0.000094 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp13 | 278 | S278T | Tct | Act | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 4 | 5 | 0.222222 | |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 1 | 5 | 0.055556 | |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 3 | 4 | AY.26 | 0.000085 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 4 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp13 | 278 | S278L | TCT | CTC | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 278 | S278L | tCT | tTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 278 | S278L | TCt | CTt | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp13 | 278 | S278E | TCT | GAG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 278 | S278C | tCt | tGt | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 278 | S278L | TCT | CTC | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 278 | S278C | tCT | tGC | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 278 | S278L | TCt | CTt | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 278 | S278L | tCT | tTA | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 3 | 3 | B.1.1.428 | 0.028302 |
ORF1ab/nsp13 | 278 | S278T | Tct | Act | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 3 | 3 | B.1.13 | 0.007126 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 3 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 1 | 3 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 278 | S278P | TcT | CcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 278 | S278del2 | tCT | t-- | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 278 | S278X | tCT | tAA | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 278 | S278X | tCT | tAG | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp13 | 278 | S278E | TCT | GAG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp13 | 278 | S278A | TcT | GcG | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 2 | 2 | B.1.1.267 | 0.020202 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 2 | 2 | B.1.131 | 0.017544 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp13 | 278 | S278T | Tct | Act | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 2 | 2 | B.39 | 0.004662 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 278 | S278D | TCt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 278 | S278C | tCT | tGC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 278 | S278T | Tct | Act | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp13 | 278 | S278E | TCT | GAG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 278 | S278D | TCt | GAt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 278 | S278X | tCT | tAG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 278 | S278T | Tct | Act | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 278 | S278X | tCT | tAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 278 | S278T | Tct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 278 | S278del2 | tCT | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 278 | S278del2 | tCT | t-- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 278 | S278C | tCt | tGt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 278 | S278A | Tct | Gct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 278 | S278Y | tCt | tAt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 278 | S278del | TCT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp13 | 278 | S278F | tCt | tTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 278 | S278C | tCt | tGt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 278 | S278S | tcT | tcC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 278 | S278P | Tct | Cct | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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