CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 278

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13278S278SS5602SsyntcTtcC7636930.90825717068-17070
ORF1ab/nsp13278S278SS5602SsyntcTtcA763470.06159917068-17070
ORF1ab/nsp13278S278SS5602SsyntcTtcG763230.030144217068-17070
ORF1ab/nsp13278S278FS5602FnonsyntCttTt1861820.97849517068-17070
ORF1ab/nsp13278S278FS5602FnonsyntCTtTC18640.021505417068-17070
ORF1ab/nsp13278S278AS5602AnonsynTctGct72710.98611117068-17070
ORF1ab/nsp13278S278AS5602AnonsynTcTGcG7210.013888917068-17070
ORF1ab/nsp13278S278delS5602deldelTCT---1616117068-17070
ORF1ab/nsp13278S278TS5602TnonsynTctAct1515117068-17070
ORF1ab/nsp13278S278YS5602YnonsyntCttAt1515117068-17070
ORF1ab/nsp13278S278PS5602PnonsynTctCct11100.90909117068-17070
ORF1ab/nsp13278S278PS5602PnonsynTcTCcC1110.090909117068-17070
ORF1ab/nsp13278S278ES5602EnonsynTCTGAG33117068-17070
ORF1ab/nsp13278S278CS5602CnonsyntCttGt320.66666717068-17070
ORF1ab/nsp13278S278LS5602LnonsyntCTtTA310.33333317068-17070
ORF1ab/nsp13278S278LS5602LnonsynTCtCTt310.33333317068-17070
ORF1ab/nsp13278S278LS5602LnonsynTCTCTC310.33333317068-17070
ORF1ab/nsp13278S278CS5602CnonsyntCTtGC310.33333317068-17070
ORF1ab/nsp13278S278del2S5602del2deltCTt--22117068-17070
ORF1ab/nsp13278S278XS5602XnonsyntCTtAG210.517068-17070
ORF1ab/nsp13278S278XS5602XnonsyntCTtAA210.517068-17070
ORF1ab/nsp13278S278DS5602DnonsynTCtGAt11117068-17070

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13278S278StcTtcC693763All0.000133
ORF1ab/nsp13278S278StcTtcA47763All0.000009
ORF1ab/nsp13278S278StcTtcG23763All0.000004
ORF1ab/nsp13278S278StcTtcC233236B.1.617.20.000877
ORF1ab/nsp13278S278StcTtcG2236B.1.617.20.000008
ORF1ab/nsp13278S278StcTtcA1236B.1.617.20.000004
ORF1ab/nsp13278S278FtCttTt182186All0.000035
ORF1ab/nsp13278S278FtCTtTC4186All0.000001
ORF1ab/nsp13278S278FtCttTt9090B.10.000824
ORF1ab/nsp13278S278StcTtcC8585B.1.2430.005915
ORF1ab/nsp13278S278StcTtcC5178B.1.1.70.000046
ORF1ab/nsp13278S278StcTtcG1678B.1.1.70.000014
ORF1ab/nsp13278S278StcTtcA1178B.1.1.70.00001
ORF1ab/nsp13278S278ATctGct7172All0.000014
ORF1ab/nsp13278S278ATcTGcG172All0
ORF1ab/nsp13278S278FtCttTt5050B.1.3480.909091
ORF1ab/nsp13278S278StcTtcC4949AY.40.000076
ORF1ab/nsp13278S278StcTtcC2832AY.430.000124
ORF1ab/nsp13278S278StcTtcA432AY.430.000018
ORF1ab/nsp13278S278StcTtcC2626AY.1030.000161
ORF1ab/nsp13278S278StcTtcC2626AY.250.000156
ORF1ab/nsp13278S278StcTtcC1626B.1.20.000141
ORF1ab/nsp13278S278StcTtcA1026B.1.20.000088
ORF1ab/nsp13278S278ATctGct2222B.1.10.000399
ORF1ab/nsp13278S278StcTtcC1717B.1.10.000308
ORF1ab/nsp13278S278delTCT---1616All0.000003
ORF1ab/nsp13278S278TTctAct1515All0.000003
ORF1ab/nsp13278S278YtCttAt1515All0.000003
ORF1ab/nsp13278S278ATctGct1313B.1.617.20.000049
ORF1ab/nsp13278S278PTctCct1011All0.000002
ORF1ab/nsp13278S278PTcTCcC111All0
ORF1ab/nsp13278S278StcTtcC1111AY.440.000067
ORF1ab/nsp13278S278StcTtcC1111B.10.000101
ORF1ab/nsp13278S278StcTtcC611B.1.1.2140.000333
ORF1ab/nsp13278S278StcTtcA511B.1.1.2140.000277
ORF1ab/nsp13278S278StcTtcC910B.1.1770.000119
ORF1ab/nsp13278S278StcTtcA110B.1.1770.000013
ORF1ab/nsp13278S278StcTtcC1010B.1.6370.000731
ORF1ab/nsp13278S278FtCttTt590.277778
ORF1ab/nsp13278S278FtCTtTC490.222222
ORF1ab/nsp13278S278StcTtcC89AY.390.000198
ORF1ab/nsp13278S278StcTtcA19AY.390.000025
ORF1ab/nsp13278S278StcTtcC88B.1.5260.000188
ORF1ab/nsp13278S278StcTtcC77B.1.1.3170.002882
ORF1ab/nsp13278S278StcTtcA47B.1.1600.000125
ORF1ab/nsp13278S278StcTtcC37B.1.1600.000094
ORF1ab/nsp13278S278StcTtcC77P.10.00011
ORF1ab/nsp13278S278TTctAct77P.10.00011
ORF1ab/nsp13278S278ATctGct66AY.98.10.000291
ORF1ab/nsp13278S278StcTtcC450.222222
ORF1ab/nsp13278S278StcTtcA150.055556
ORF1ab/nsp13278S278StcTtcC55AY.1180.000313
ORF1ab/nsp13278S278StcTtcC55AY.30.00005
ORF1ab/nsp13278S278FtCttTt55AY.40.000008
ORF1ab/nsp13278S278ATctGct55AY.60.000206
ORF1ab/nsp13278S278ATctGct44AY.230.000279
ORF1ab/nsp13278S278StcTtcA34AY.260.000085
ORF1ab/nsp13278S278StcTtcC14AY.260.000028
ORF1ab/nsp13278S278FtCttTt44B.1.1.70.000004
ORF1ab/nsp13278S278ATctGct44P.10.000063
ORF1ab/nsp13278S278LTCTCTC130.055556
ORF1ab/nsp13278S278LtCTtTA130.055556
ORF1ab/nsp13278S278LTCtCTt130.055556
ORF1ab/nsp13278S278ATctGct33A.2.50.001497
ORF1ab/nsp13278S278ETCTGAG33All0.000001
ORF1ab/nsp13278S278CtCttGt23All0
ORF1ab/nsp13278S278LTCTCTC13All0
ORF1ab/nsp13278S278CtCTtGC13All0
ORF1ab/nsp13278S278LTCtCTt13All0
ORF1ab/nsp13278S278LtCTtTA13All0
ORF1ab/nsp13278S278StcTtcC33AY.1020.00008
ORF1ab/nsp13278S278StcTtcC33AY.39.10.000119
ORF1ab/nsp13278S278FtCttTt33AY.430.000013
ORF1ab/nsp13278S278StcTtcC33B.1.1.4280.028302
ORF1ab/nsp13278S278TTctAct33B.1.1.5190.000119
ORF1ab/nsp13278S278delTCT---33B.1.1.70.000003
ORF1ab/nsp13278S278ATctGct33B.1.1.70.000003
ORF1ab/nsp13278S278YtCttAt33B.1.1.70.000003
ORF1ab/nsp13278S278YtCttAt33B.1.130.007126
ORF1ab/nsp13278S278FtCttTt33B.1.1770.00004
ORF1ab/nsp13278S278FtCttTt33B.1.20.000026
ORF1ab/nsp13278S278StcTtcC33B.1.36.80.003
ORF1ab/nsp13278S278StcTtcC23B.1.4290.000047
ORF1ab/nsp13278S278StcTtcG13B.1.4290.000024
ORF1ab/nsp13278S278StcTtcC33B.1.4700.004213
ORF1ab/nsp13278S278PTctCct33D.20.000225
ORF1ab/nsp13278S278PTctCct120.055556
ORF1ab/nsp13278S278PTcTCcC120.055556
ORF1ab/nsp13278S278del2tCTt--22All0
ORF1ab/nsp13278S278XtCTtAA12All0
ORF1ab/nsp13278S278XtCTtAG12All0
ORF1ab/nsp13278S278StcTtcC22AY.200.000078
ORF1ab/nsp13278S278StcTtcC22AY.3.10.000171
ORF1ab/nsp13278S278StcTtcC22AY.330.000134
ORF1ab/nsp13278S278StcTtcC22AY.4.20.000043
ORF1ab/nsp13278S278ATctGct22AY.420.00008
ORF1ab/nsp13278S278ETCTGAG22AY.430.000009
ORF1ab/nsp13278S278delTCT---22AY.430.000009
ORF1ab/nsp13278S278ATctGct22AY.430.000009
ORF1ab/nsp13278S278StcTtcC22AY.470.000062
ORF1ab/nsp13278S278StcTtcC22AY.50.000041
ORF1ab/nsp13278S278StcTtcC22AY.60.000082
ORF1ab/nsp13278S278StcTtcC22AY.610.00021
ORF1ab/nsp13278S278ATcTGcG12AY.840.000437
ORF1ab/nsp13278S278ATctGct12AY.840.000437
ORF1ab/nsp13278S278delTCT---22AY.990.002099
ORF1ab/nsp13278S278YtCttAt22B.10.000018
ORF1ab/nsp13278S278StcTtcC22B.1.1.1410.004024
ORF1ab/nsp13278S278StcTtcA22B.1.1.2670.020202
ORF1ab/nsp13278S278StcTtcC22B.1.1.5190.000079
ORF1ab/nsp13278S278StcTtcC22B.1.1.5230.003125
ORF1ab/nsp13278S278StcTtcA22B.1.1310.017544
ORF1ab/nsp13278S278StcTtcC22B.1.177.210.000153
ORF1ab/nsp13278S278YtCttAt22B.1.20.000018
ORF1ab/nsp13278S278FtCttTt22B.1.2210.000142
ORF1ab/nsp13278S278StcTtcC22B.1.2320.001075
ORF1ab/nsp13278S278StcTtcC22B.1.2580.000133
ORF1ab/nsp13278S278StcTtcA12B.1.466.20.000391
ORF1ab/nsp13278S278StcTtcC12B.1.466.20.000391
ORF1ab/nsp13278S278FtCttTt22B.1.5960.000174
ORF1ab/nsp13278S278TTctAct22B.1.6210.000177
ORF1ab/nsp13278S278FtCttTt22B.390.004662
ORF1ab/nsp13278S278StcTtcC22C.360.001821
ORF1ab/nsp13278S278StcTtcC11A.20.000662
ORF1ab/nsp13278S278DTCtGAt11All0
ORF1ab/nsp13278S278StcTtcC11AU.20.002421
ORF1ab/nsp13278S278ATctGct11AY.1000.000046
ORF1ab/nsp13278S278StcTtcG11AY.1000.000046
ORF1ab/nsp13278S278ATctGct11AY.1020.000027
ORF1ab/nsp13278S278FtCttTt11AY.1030.000006
ORF1ab/nsp13278S278StcTtcC11AY.1130.000142
ORF1ab/nsp13278S278FtCttTt11AY.160.00038
ORF1ab/nsp13278S278StcTtcG11AY.23.10.000417
ORF1ab/nsp13278S278StcTtcC11AY.240.000431
ORF1ab/nsp13278S278FtCttTt11AY.250.000006
ORF1ab/nsp13278S278delTCT---11AY.30.00001
ORF1ab/nsp13278S278StcTtcC11AY.340.000097
ORF1ab/nsp13278S278ATctGct11AY.40.000002
ORF1ab/nsp13278S278PTctCct11AY.440.000006
ORF1ab/nsp13278S278delTCT---11AY.440.000006
ORF1ab/nsp13278S278FtCttTt11AY.440.000006
ORF1ab/nsp13278S278CtCTtGC11AY.46.20.000635
ORF1ab/nsp13278S278TTctAct11AY.470.000031
ORF1ab/nsp13278S278ATctGct11AY.550.000917
ORF1ab/nsp13278S278delTCT---11AY.670.000464
ORF1ab/nsp13278S278delTCT---11AY.750.000056
ORF1ab/nsp13278S278StcTtcC11AY.75.10.00018
ORF1ab/nsp13278S278ATctGct11AY.770.001127
ORF1ab/nsp13278S278ETCTGAG11AY.840.000437
ORF1ab/nsp13278S278YtCttAt11AY.840.000437
ORF1ab/nsp13278S278DTCtGAt11AY.840.000437
ORF1ab/nsp13278S278XtCTtAG11AY.840.000437
ORF1ab/nsp13278S278StcTtcG11AY.840.000437
ORF1ab/nsp13278S278StcTtcC11AY.90.000068
ORF1ab/nsp13278S278StcTtcC11AY.9.20.000037
ORF1ab/nsp13278S278StcTtcC11AY.930.000273
ORF1ab/nsp13278S278StcTtcC11AZ.30.00152
ORF1ab/nsp13278S278StcTtcC11B0.000128
ORF1ab/nsp13278S278PTctCct11B.10.000009
ORF1ab/nsp13278S278TTctAct11B.10.000009
ORF1ab/nsp13278S278delTCT---11B.10.000009
ORF1ab/nsp13278S278YtCttAt11B.1.10.000018
ORF1ab/nsp13278S278StcTtcC11B.1.1.10.000327
ORF1ab/nsp13278S278FtCttTt11B.1.1.2160.00089
ORF1ab/nsp13278S278FtCttTt11B.1.1.2530.002506
ORF1ab/nsp13278S278StcTtcC11B.1.1.4190.007407
ORF1ab/nsp13278S278PTctCct11B.1.1.70.000001
ORF1ab/nsp13278S278XtCTtAA11B.1.1.70.000001
ORF1ab/nsp13278S278TTctAct11B.1.1.70.000001
ORF1ab/nsp13278S278del2tCTt--11B.1.1.70.000001
ORF1ab/nsp13278S278del2tCTt--11B.1.1770.000013
ORF1ab/nsp13278S278delTCT---11B.1.177.150.000631
ORF1ab/nsp13278S278delTCT---11B.1.20.000009
ORF1ab/nsp13278S278YtCttAt11B.1.2430.00007
ORF1ab/nsp13278S278StcTtcC11B.1.2650.001271
ORF1ab/nsp13278S278FtCttTt11B.1.3380.008621
ORF1ab/nsp13278S278PTctCct11B.1.3490.000715
ORF1ab/nsp13278S278CtCttGt11B.1.351.30.000876
ORF1ab/nsp13278S278YtCttAt11B.1.351.30.000876
ORF1ab/nsp13278S278StcTtcC11B.1.360.000146
ORF1ab/nsp13278S278PTctCct11B.1.360.000146
ORF1ab/nsp13278S278FtCttTt11B.1.36.180.00042
ORF1ab/nsp13278S278FtCttTt11B.1.3670.000792
ORF1ab/nsp13278S278FtCttTt11B.1.3910.001127
ORF1ab/nsp13278S278delTCT---11B.1.4270.00005
ORF1ab/nsp13278S278ATctGct11B.1.466.20.000391
ORF1ab/nsp13278S278FtCttTt11B.1.5800.004065
ORF1ab/nsp13278S278StcTtcG11B.1.5950.000261
ORF1ab/nsp13278S278StcTtcC11B.1.5960.000087
ORF1ab/nsp13278S278FtCttTt11B.1.617.20.000004
ORF1ab/nsp13278S278YtCttAt11B.1.6370.000073
ORF1ab/nsp13278S278delTCT---11B.340.013699
ORF1ab/nsp13278S278FtCttTt11B.40.002208
ORF1ab/nsp13278S278StcTtcC11D.20.000075
ORF1ab/nsp13278S278StcTtcC11D.30.005917
ORF1ab/nsp13278S278StcTtcA11P.1.140.000048
ORF1ab/nsp13278S278CtCttGt11P.1.150.000232
ORF1ab/nsp13278S278StcTtcC11P.20.000187
ORF1ab/nsp13278S278PTctCct11Q.10.000126