CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 277 & Codon = taC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13277Y277YY5601YsyntaTtaC432432117065-17067

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13277Y277YtaTtaC432432All0.000083
ORF1ab/nsp13277Y277YtaTtaC7171AY.40.000111
ORF1ab/nsp13277Y277YtaTtaC5454B.1.1.70.000048
ORF1ab/nsp13277Y277YtaTtaC3333B.1.1.500.022403
ORF1ab/nsp13277Y277YtaTtaC3030B.1.1.5190.001191
ORF1ab/nsp13277Y277YtaTtaC2323B.1.2410.018669
ORF1ab/nsp13277Y277YtaTtaC2020B.1.617.20.000075
ORF1ab/nsp13277Y277YtaTtaC1717AY.250.000102
ORF1ab/nsp13277Y277YtaTtaC1717AY.460.001769
ORF1ab/nsp13277Y277YtaTtaC1616P.10.000252
ORF1ab/nsp13277Y277YtaTtaC1313B.1.5250.001471
ORF1ab/nsp13277Y277YtaTtaC1212B.1.20.000106
ORF1ab/nsp13277Y277YtaTtaC1010A.2.50.00499
ORF1ab/nsp13277Y277YtaTtaC1010AY.1000.00046
ORF1ab/nsp13277Y277YtaTtaC99B.1.1.280.002801
ORF1ab/nsp13277Y277YtaTtaC99B.1.4530.029126
ORF1ab/nsp13277Y277YtaTtaC88AY.440.000049
ORF1ab/nsp13277Y277YtaTtaC77AY.1030.000043
ORF1ab/nsp13277Y277YtaTtaC77AY.140.000616
ORF1ab/nsp13277Y277YtaTtaC55B.1.2430.000348
ORF1ab/nsp13277Y277YtaTtaC55B.550.014749
ORF1ab/nsp13277Y277YtaTtaC44AY.430.000018
ORF1ab/nsp13277Y277YtaTtaC33B.10.000027
ORF1ab/nsp13277Y277YtaTtaC33C.370.000348
ORF1ab/nsp13277Y277YtaTtaC22A.23.10.001408
ORF1ab/nsp13277Y277YtaTtaC22AY.290.000032
ORF1ab/nsp13277Y277YtaTtaC22AY.750.000112
ORF1ab/nsp13277Y277YtaTtaC22AY.9.20.000073
ORF1ab/nsp13277Y277YtaTtaC22AY.99.20.000184
ORF1ab/nsp13277Y277YtaTtaC22B.1.10.000036
ORF1ab/nsp13277Y277YtaTtaC22B.1.2580.000133
ORF1ab/nsp13277Y277YtaTtaC22B.1.4380.013072
ORF1ab/nsp13277Y277YtaTtaC22B.1.5170.000854
ORF1ab/nsp13277Y277YtaTtaC22B.1.5640.000852
ORF1ab/nsp13277Y277YtaTtaC22B.1.617.10.000258
ORF1ab/nsp13277Y277YtaTtaC22P.1.170.000324
ORF1ab/nsp13277Y277YtaTtaC110.055556
ORF1ab/nsp13277Y277YtaTtaC11AY.1050.000643
ORF1ab/nsp13277Y277YtaTtaC11AY.1110.000183
ORF1ab/nsp13277Y277YtaTtaC11AY.116.10.000311
ORF1ab/nsp13277Y277YtaTtaC11AY.230.00007
ORF1ab/nsp13277Y277YtaTtaC11AY.260.000028
ORF1ab/nsp13277Y277YtaTtaC11AY.4.2.10.000149
ORF1ab/nsp13277Y277YtaTtaC11AY.410.000294
ORF1ab/nsp13277Y277YtaTtaC11AY.670.000464
ORF1ab/nsp13277Y277YtaTtaC11AY.920.000287
ORF1ab/nsp13277Y277YtaTtaC11B.1.1.10.000327
ORF1ab/nsp13277Y277YtaTtaC11B.1.1.2140.000055
ORF1ab/nsp13277Y277YtaTtaC11B.1.1.2210.010101
ORF1ab/nsp13277Y277YtaTtaC11B.1.1770.000013
ORF1ab/nsp13277Y277YtaTtaC11B.1.177.450.000381
ORF1ab/nsp13277Y277YtaTtaC11B.1.177.570.000281
ORF1ab/nsp13277Y277YtaTtaC11B.1.2230.002778
ORF1ab/nsp13277Y277YtaTtaC11B.1.2270.047619
ORF1ab/nsp13277Y277YtaTtaC11B.1.258.110.000396
ORF1ab/nsp13277Y277YtaTtaC11B.1.3510.00003
ORF1ab/nsp13277Y277YtaTtaC11B.1.4520.013699
ORF1ab/nsp13277Y277YtaTtaC11B.1.6360.006711

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.