CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 27

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1327C27CC5351CsyntgTtgC961961116315-16317
ORF1ab/nsp1327C27delC5351deldelTGT---8686116315-16317
ORF1ab/nsp1327C27FC5351FnonsyntGttTt99116315-16317
ORF1ab/nsp1327C27SC5351SnonsyntGttCt850.62516315-16317
ORF1ab/nsp1327C27SC5351SnonsynTgtAgt830.37516315-16317
ORF1ab/nsp1327C27YC5351YnonsyntGttAt66116315-16317
ORF1ab/nsp1327C27RC5351RnonsynTgtCgt650.83333316315-16317
ORF1ab/nsp1327C27RC5351RnonsynTgTAgG610.16666716315-16317
ORF1ab/nsp1327C27NC5351NnonsynTGTAAC430.7516315-16317
ORF1ab/nsp1327C27NC5351NnonsynTGtAAt410.2516315-16317
ORF1ab/nsp1327C27GC5351GnonsynTgtGgt22116315-16317
ORF1ab/nsp1327C27WC5351WnonsyntgTtgG22116315-16317
ORF1ab/nsp1327C27DC5351DnonsynTGtGAt11116315-16317
ORF1ab/nsp1327C27del1C5351del1delTgt-gt11116315-16317

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1327C27CtgTtgC961961All0.000184
ORF1ab/nsp1327C27CtgTtgC662662B.1.3610.853093
ORF1ab/nsp1327C27delTGT---8686All0.000016
ORF1ab/nsp1327C27CtgTtgC7676B.1.4290.001788
ORF1ab/nsp1327C27CtgTtgC4949AY.1030.000304
ORF1ab/nsp1327C27delTGT---4444B.1.1.70.000039
ORF1ab/nsp1327C27CtgTtgC3939B.10.000357
ORF1ab/nsp1327C27CtgTtgC3737AY.40.000058
ORF1ab/nsp1327C27CtgTtgC2424B.1.20.000211
ORF1ab/nsp1327C27CtgTtgC1616B.1.1.70.000014
ORF1ab/nsp1327C27CtgTtgC1010B.1.5960.000871
ORF1ab/nsp1327C27FtGttTt99All0.000002
ORF1ab/nsp1327C27StGttCt58All0.000001
ORF1ab/nsp1327C27STgtAgt38All0.000001
ORF1ab/nsp1327C27delTGT---77B.1.1770.000092
ORF1ab/nsp1327C27YtGttAt66All0.000001
ORF1ab/nsp1327C27RTgtCgt56All0.000001
ORF1ab/nsp1327C27RTgTAgG16All0
ORF1ab/nsp1327C27delTGT---66AY.430.000027
ORF1ab/nsp1327C27CtgTtgC66B.1.617.20.000023
ORF1ab/nsp1327C27CtgTtgC55B.1.5800.020325
ORF1ab/nsp1327C27NTGTAAC34All0.000001
ORF1ab/nsp1327C27NTGtAAt14All0
ORF1ab/nsp1327C27CtgTtgC44AY.440.000024
ORF1ab/nsp1327C27delTGT---44B.10.000037
ORF1ab/nsp1327C27CtgTtgC44B.1.258.170.000416
ORF1ab/nsp1327C27delTGT---44B.1.617.20.000015
ORF1ab/nsp1327C27CtgTtgC44P.1.100.001078
ORF1ab/nsp1327C27delTGT---33AY.40.000005
ORF1ab/nsp1327C27StGttCt23AY.40.000003
ORF1ab/nsp1327C27STgtAgt13AY.40.000002
ORF1ab/nsp1327C27STgtAgt23B.1.1.70.000002
ORF1ab/nsp1327C27StGttCt13B.1.1.70.000001
ORF1ab/nsp1327C27delTGT---220.111111
ORF1ab/nsp1327C27NTGTAAC220.111111
ORF1ab/nsp1327C27WtgTtgG22All0
ORF1ab/nsp1327C27GTgtGgt22All0
ORF1ab/nsp1327C27CtgTtgC22AY.30.00002
ORF1ab/nsp1327C27YtGttAt22AY.40.000003
ORF1ab/nsp1327C27delTGT---22AY.4.50.000215
ORF1ab/nsp1327C27CtgTtgC22B.1.10.000036
ORF1ab/nsp1327C27NTGTAAC12B.1.10.000018
ORF1ab/nsp1327C27NTGtAAt12B.1.10.000018
ORF1ab/nsp1327C27CtgTtgC22B.1.780.017094
ORF1ab/nsp1327C27FtGttTt22D.20.00015
ORF1ab/nsp1327C27FtGttTt110.055556
ORF1ab/nsp1327C27CtgTtgC11A0.000387
ORF1ab/nsp1327C27RTgtCgt11A.2.50.000499
ORF1ab/nsp1327C27DTGtGAt11All0
ORF1ab/nsp1327C27del1Tgt-gt11All0
ORF1ab/nsp1327C27del1Tgt-gt11AY.1000.000046
ORF1ab/nsp1327C27CtgTtgC11AY.1020.000027
ORF1ab/nsp1327C27CtgTtgC11AY.1090.00074
ORF1ab/nsp1327C27delTGT---11AY.1130.000142
ORF1ab/nsp1327C27CtgTtgC11AY.200.000039
ORF1ab/nsp1327C27FtGttTt11AY.250.000006
ORF1ab/nsp1327C27delTGT---11AY.30.00001
ORF1ab/nsp1327C27CtgTtgC11AY.330.000067
ORF1ab/nsp1327C27FtGttTt11AY.390.000025
ORF1ab/nsp1327C27RTgTAgG11AY.390.000025
ORF1ab/nsp1327C27CtgTtgC11AY.420.00004
ORF1ab/nsp1327C27delTGT---11AY.420.00004
ORF1ab/nsp1327C27CtgTtgC11AY.470.000031
ORF1ab/nsp1327C27FtGttTt11AY.50.000021
ORF1ab/nsp1327C27CtgTtgC11AY.610.000105
ORF1ab/nsp1327C27delTGT---11AY.670.000464
ORF1ab/nsp1327C27delTGT---11AY.750.000056
ORF1ab/nsp1327C27WtgTtgG11AY.990.001049
ORF1ab/nsp1327C27FtGttTt11B0.000128
ORF1ab/nsp1327C27YtGttAt11B0.000128
ORF1ab/nsp1327C27YtGttAt11B.10.000009
ORF1ab/nsp1327C27DTGtGAt11B.10.000009
ORF1ab/nsp1327C27RTgtCgt11B.10.000009
ORF1ab/nsp1327C27StGttCt11B.10.000009
ORF1ab/nsp1327C27YtGttAt11B.1.1.100.001115
ORF1ab/nsp1327C27CtgTtgC11B.1.1.2220.000204
ORF1ab/nsp1327C27delTGT---11B.1.1.3110.000358
ORF1ab/nsp1327C27StGttCt11B.1.1.610.008772
ORF1ab/nsp1327C27GTgtGgt11B.1.1.70.000001
ORF1ab/nsp1327C27FtGttTt11B.1.1.70.000001
ORF1ab/nsp1327C27WtgTtgG11B.1.1.70.000001
ORF1ab/nsp1327C27CtgTtgC11B.1.1110.001175
ORF1ab/nsp1327C27CtgTtgC11B.1.1430.021277
ORF1ab/nsp1327C27RTgtCgt11B.1.1600.000031
ORF1ab/nsp1327C27CtgTtgC11B.1.1700.00431
ORF1ab/nsp1327C27YtGttAt11B.1.1770.000013
ORF1ab/nsp1327C27FtGttTt11B.1.177.600.000218
ORF1ab/nsp1327C27delTGT---11B.1.177.620.001192
ORF1ab/nsp1327C27delTGT---11B.1.177.680.015152
ORF1ab/nsp1327C27delTGT---11B.1.177.70.000165
ORF1ab/nsp1327C27delTGT---11B.1.177.730.000566
ORF1ab/nsp1327C27delTGT---11B.1.20.000009
ORF1ab/nsp1327C27CtgTtgC11B.1.2430.00007
ORF1ab/nsp1327C27RTgtCgt11B.1.2580.000067
ORF1ab/nsp1327C27CtgTtgC11B.1.2580.000067
ORF1ab/nsp1327C27CtgTtgC11B.1.36.380.001642
ORF1ab/nsp1327C27CtgTtgC11B.1.3800.006623
ORF1ab/nsp1327C27delTGT---11B.1.416.10.001563
ORF1ab/nsp1327C27CtgTtgC11B.1.4270.00005
ORF1ab/nsp1327C27RTgtCgt11B.1.4270.00005
ORF1ab/nsp1327C27CtgTtgC11B.1.5260.000024
ORF1ab/nsp1327C27CtgTtgC11B.1.5640.000426
ORF1ab/nsp1327C27GTgtGgt11B.1.6090.000479
ORF1ab/nsp1327C27delTGT---11C.170.055556
ORF1ab/nsp1327C27delTGT---11Q.20.000613