CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 268 | N268N | N5592N | syn | aaT | aaC | 322174 | 322174 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268S | N5592S | nonsyn | aAt | aGt | 397 | 392 | 0.987406 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268S | N5592S | nonsyn | aAT | aGC | 397 | 5 | 0.0125945 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268H | N5592H | nonsyn | Aat | Cat | 231 | 231 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268K | N5592K | nonsyn | aaT | aaA | 170 | 114 | 0.670588 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268K | N5592K | nonsyn | aaT | aaG | 170 | 56 | 0.329412 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268D | N5592D | nonsyn | AaT | GaC | 86 | 71 | 0.825581 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268D | N5592D | nonsyn | Aat | Gat | 86 | 15 | 0.174419 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268T | N5592T | nonsyn | aAt | aCt | 75 | 75 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268del | N5592del | del | AAT | --- | 15 | 15 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268I | N5592I | nonsyn | aAt | aTt | 13 | 13 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268del1 | N5592del1 | del | Aat | -at | 5 | 3 | 0.6 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268del1 | N5592del1 | del | aaT | aa- | 5 | 2 | 0.4 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268C | N5592C | nonsyn | AAt | TGt | 3 | 3 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268L | N5592L | nonsyn | AAt | CTt | 3 | 3 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268Y | N5592Y | nonsyn | Aat | Tat | 3 | 3 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268del2 | N5592del2 | del | AAt | --t | 1 | 1 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268P | N5592P | nonsyn | AAt | CCt | 1 | 1 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268V | N5592V | nonsyn | AAt | GTt | 1 | 1 | 1 | 17038-17040 |
ORF1ab/nsp13 | 268 | N268F | N5592F | nonsyn | AAt | TTt | 1 | 1 | 1 | 17038-17040 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 322174 | 322174 | All | 0.06162 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 258834 | 258834 | AY.4 | 0.402855 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 46096 | 46096 | AY.4.2 | 0.999761 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 6565 | 6565 | AY.4.2.1 | 0.978099 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5676 | 5676 | B.1.617.2 | 0.021372 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1354 | 1354 | AY.4.1 | 0.998525 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 966 | 966 | AY.43 | 0.00428 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 627 | 627 | AY.42 | 0.025224 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 438 | 438 | AY.9 | 0.029607 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 392 | 397 | All | 0.000075 |
ORF1ab/nsp13 | 268 | N268S | aAT | aGC | 5 | 397 | All | 0.000001 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 300 | 300 | B.1.433 | 0.958466 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 231 | 231 | All | 0.000044 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 217 | 217 | AY.41 | 0.063786 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 187 | 187 | B.1.1.7 | 0.000167 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 175 | 175 | AY.39 | 0.004325 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaA | 114 | 170 | All | 0.000022 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaG | 56 | 170 | All | 0.000011 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 165 | 165 | B.1.1.7 | 0.000148 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 105 | 105 | AY.4.5 | 0.011287 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaA | 104 | 104 | AY.42 | 0.004184 |
ORF1ab/nsp13 | 268 | N268D | AaT | GaC | 71 | 86 | All | 0.000014 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 15 | 86 | All | 0.000003 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 76 | 76 | AY.119 | 0.002683 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 75 | 75 | All | 0.000014 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 71 | 71 | B.1.258 | 0.004725 |
ORF1ab/nsp13 | 268 | N268D | AaT | GaC | 65 | 66 | AY.4 | 0.000101 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 66 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 61 | 61 | B.1.258.24 | 0.655914 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 52 | 52 | AY.46.6 | 0.003755 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaG | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 38 | 38 | AY.120 | 0.001413 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 33 | 33 | AY.102 | 0.000875 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 30 | 30 | AY.84 | 0.013123 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 27 | 27 | AY.5 | 0.000558 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 24 | 24 | AY.4.3 | 0.020202 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 18 | 19 | B.1 | 0.000165 |
ORF1ab/nsp13 | 268 | N268S | aAT | aGC | 1 | 19 | B.1 | 0.000009 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 17 | 17 | AY.46 | 0.001769 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 16 | 16 | AY.98 | 0.001264 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 15 | 15 | All | 0.000003 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 15 | 15 | AY.89 | 0.073529 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 13 | 13 | All | 0.000002 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 13 | 13 | AY.117 | 0.001099 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 13 | 13 | AY.45 | 0.001582 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 13 | 13 | AY.91 | 0.009496 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 12 | 12 | AY.5.3 | 0.004049 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 12 | 12 | AY.52 | 0.009772 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 12 | 12 | AY.54 | 0.001144 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 12 | 12 | AY.6 | 0.000494 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 12 | 12 | AY.99 | 0.012592 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 12 | 12 | B.1.111 | 0.014101 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 11 | 11 | AY.32 | 0.005857 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 10 | 10 | AY.34 | 0.00097 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 10 | 10 | AY.46.1 | 0.010267 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 10 | 10 | AY.46.2 | 0.006353 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 9 | 9 | A.2.5 | 0.004491 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 9 | 9 | AY.59 | 0.004767 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaA | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 8 | 8 | AY.78 | 0.012327 |
ORF1ab/nsp13 | 268 | N268D | AaT | GaC | 6 | 8 | B.1.617.2 | 0.000023 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 2 | 8 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaG | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp13 | 268 | N268del1 | Aat | -at | 3 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 268 | N268del1 | aaT | aa- | 2 | 5 | All | 0 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp13 | 268 | N268S | aAT | aGC | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5 | 5 | AY.80 | 0.005643 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.77 | 0.00451 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.82 | 0.005427 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 268 | N268del1 | Aat | -at | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 268 | N268del1 | aaT | aa- | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 4 | 4 | B.1.149 | 0.013699 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 4 | 4 | B.1.555 | 0.088889 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp13 | 268 | N268Y | Aat | Tat | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 268 | N268C | AAt | TGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 268 | N268L | AAt | CTt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 3 | 3 | B.1.76 | 0.034091 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 268 | N268L | AAt | CTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 2 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 268 | N268S | aAT | aGC | 1 | 2 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 268 | N268S | aAT | aGC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaG | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaG | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 2 | 2 | B.1.366 | 0.009756 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 268 | N268F | AAt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 268 | N268del2 | AAt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 268 | N268V | AAt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 268 | N268P | AAt | CCt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 268 | N268Y | Aat | Tat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp13 | 268 | N268F | AAt | TTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 268 | N268C | AAt | TGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp13 | 268 | N268C | AAt | TGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 268 | N268C | AAt | TGt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 268 | N268del1 | Aat | -at | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaA | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 268 | N268Y | Aat | Tat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 268 | N268P | AAt | CCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 268 | N268V | AAt | GTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp13 | 268 | N268del2 | AAt | --t | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 268 | N268L | AAt | CTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 268 | N268Y | Aat | Tat | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 268 | N268D | Aat | Gat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 268 | N268K | aaT | aaA | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 268 | N268T | aAt | aCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 268 | N268del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 268 | N268H | Aat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 268 | N268I | aAt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 268 | N268N | aaT | aaC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 268 | N268S | aAt | aGt | 1 | 1 | P.1.15 | 0.000232 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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