CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 258

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13258I258II5582IsynatCatT996997860.98164317008-17010
ORF1ab/nsp13258I258II5582IsynatCatA99691830.018356917008-17010
ORF1ab/nsp13258I258VI5582VnonsynAtcGtc5545530.99819517008-17010
ORF1ab/nsp13258I258VI5582VnonsynAtCGtT55410.0018050517008-17010
ORF1ab/nsp13258I258TI5582TnonsynaTcaCc396396117008-17010
ORF1ab/nsp13258I258SI5582SnonsynaTcaGc1551540.99354817008-17010
ORF1ab/nsp13258I258SI5582SnonsynaTCaGT15510.0064516117008-17010
ORF1ab/nsp13258I258delI5582deldelATC---2525117008-17010
ORF1ab/nsp13258I258MI5582MnonsynatCatG1111117008-17010
ORF1ab/nsp13258I258FI5582FnonsynAtcTtc99117008-17010
ORF1ab/nsp13258I258RI5582RnonsynATCCGT77117008-17010
ORF1ab/nsp13258I258NI5582NnonsynaTcaAc33117008-17010
ORF1ab/nsp13258I258LI5582LnonsynAtcCtc320.66666717008-17010
ORF1ab/nsp13258I258del1I5582del1delatCat-320.66666717008-17010
ORF1ab/nsp13258I258del1I5582del1delAtc-tc310.33333317008-17010
ORF1ab/nsp13258I258LI5582LnonsynAtCCtG310.33333317008-17010
ORF1ab/nsp13258I258CI5582CnonsynATcTGc11117008-17010
ORF1ab/nsp13258I258PI5582PnonsynATcCCc11117008-17010

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13258I258IatCatT97869969All0.001872
ORF1ab/nsp13258I258IatCatA1839969All0.000035
ORF1ab/nsp13258I258IatCatT24332440AY.250.014634
ORF1ab/nsp13258I258IatCatA72440AY.250.000042
ORF1ab/nsp13258I258IatCatT11991210AY.40.001866
ORF1ab/nsp13258I258IatCatA111210AY.40.000017
ORF1ab/nsp13258I258IatCatT962962B.1.214.20.576739
ORF1ab/nsp13258I258IatCatT851888B.1.1.70.000762
ORF1ab/nsp13258I258IatCatA37888B.1.1.70.000033
ORF1ab/nsp13258I258VAtcGtc553554All0.000106
ORF1ab/nsp13258I258VAtCGtT1554All0
ORF1ab/nsp13258I258TaTcaCc396396All0.000076
ORF1ab/nsp13258I258IatCatT336336AY.750.018824
ORF1ab/nsp13258I258IatCatT309311B.1.617.20.001164
ORF1ab/nsp13258I258IatCatA2311B.1.617.20.000008
ORF1ab/nsp13258I258IatCatT222257B.1.20.001955
ORF1ab/nsp13258I258IatCatA35257B.1.20.000308
ORF1ab/nsp13258I258IatCatT253255AY.1020.006708
ORF1ab/nsp13258I258IatCatA2255AY.1020.000053
ORF1ab/nsp13258I258IatCatT245245AY.91.10.995935
ORF1ab/nsp13258I258IatCatT236236C.36.10.979253
ORF1ab/nsp13258I258SaTcaGc154155All0.000029
ORF1ab/nsp13258I258SaTCaGT1155All0
ORF1ab/nsp13258I258VAtcGtc142142B.1.4290.003341
ORF1ab/nsp13258I258SaTcaGc141141B.1.1.70.000126
ORF1ab/nsp13258I258IatCatT122126AY.1030.000758
ORF1ab/nsp13258I258IatCatA4126AY.1030.000025
ORF1ab/nsp13258I258IatCatT116125AY.440.000706
ORF1ab/nsp13258I258IatCatA9125AY.440.000055
ORF1ab/nsp13258I258IatCatT113123AY.430.000501
ORF1ab/nsp13258I258IatCatA10123AY.430.000044
ORF1ab/nsp13258I258IatCatT111112B.1.4290.002612
ORF1ab/nsp13258I258IatCatA1112B.1.4290.000024
ORF1ab/nsp13258I258IatCatT108111B.10.000989
ORF1ab/nsp13258I258IatCatA3111B.10.000027
ORF1ab/nsp13258I258IatCatT110110B.1.214.41
ORF1ab/nsp13258I258IatCatT103107AY.4.20.002234
ORF1ab/nsp13258I258IatCatA4107AY.4.20.000087
ORF1ab/nsp13258I258IatCatT102102A.10.028749
ORF1ab/nsp13258I258IatCatT102102B.1.177.820.048687
ORF1ab/nsp13258I258TaTcaCc9494B.1.1.70.000084
ORF1ab/nsp13258I258IatCatT9191AY.270.00589
ORF1ab/nsp13258I258IatCatT7676P.10.001197
ORF1ab/nsp13258I258VAtcGtc6565B.1.1.70.000058
ORF1ab/nsp13258I258TaTcaCc6262AY.40.000096
ORF1ab/nsp13258I258IatCatT6060B.1.4270.00303
ORF1ab/nsp13258I258IatCatT5959AY.1190.002083
ORF1ab/nsp13258I258IatCatT5657AY.390.001384
ORF1ab/nsp13258I258IatCatA157AY.390.000025
ORF1ab/nsp13258I258VAtcGtc5656AY.430.000248
ORF1ab/nsp13258I258IatCatT5252B.1.2911
ORF1ab/nsp13258I258IatCatT5151AY.99.20.0047
ORF1ab/nsp13258I258IatCatT5050AY.740.005782
ORF1ab/nsp13258I258IatCatT4546B.1.10.000816
ORF1ab/nsp13258I258IatCatA146B.1.10.000018
ORF1ab/nsp13258I258IatCatT4545B.1.36.10.051311
ORF1ab/nsp13258I258IatCatT4242B.1.1.3841
ORF1ab/nsp13258I258IatCatT3536AY.260.000991
ORF1ab/nsp13258I258IatCatA136AY.260.000028
ORF1ab/nsp13258I258IatCatT3636AY.4.2.10.005364
ORF1ab/nsp13258I258IatCatT3435B.1.1770.000448
ORF1ab/nsp13258I258IatCatA135B.1.1770.000013
ORF1ab/nsp13258I258IatCatA3535B.400.01275
ORF1ab/nsp13258I258IatCatT3434B.1.1890.145923
ORF1ab/nsp13258I258IatCatT2828AY.330.00187
ORF1ab/nsp13258I258VAtcGtc2828B.1.80.055227
ORF1ab/nsp13258I258IatCatT2727A.2.50.013473
ORF1ab/nsp13258I258TaTcaCc2626B.1.1.3510.072626
ORF1ab/nsp13258I258delATC---2525All0.000005
ORF1ab/nsp13258I258VAtcGtc2424AY.40.000037
ORF1ab/nsp13258I258IatCatT2424AY.46.60.001733
ORF1ab/nsp13258I258IatCatT2222AY.1210.002977
ORF1ab/nsp13258I258IatCatT2222B.1.1.3560.188034
ORF1ab/nsp13258I258IatCatT2222B.1.2580.001464
ORF1ab/nsp13258I258IatCatT2121AY.20.007479
ORF1ab/nsp13258I258IatCatT2121AY.50.000434
ORF1ab/nsp13258I258IatCatT2121B.1.4020.205882
ORF1ab/nsp13258I258IatCatT2020AY.1180.001253
ORF1ab/nsp13258I258IatCatT2020AY.39.10.000792
ORF1ab/nsp13258I258TaTcaCc2020B.1.1770.000263
ORF1ab/nsp13258I258IatCatT2020P.1.100.005389
ORF1ab/nsp13258I258IatCatT1919AY.30.000189
ORF1ab/nsp13258I258IatCatT1919B.1.1600.000593
ORF1ab/nsp13258I258TaTcaCc1818AY.1030.000112
ORF1ab/nsp13258I258IatCatT1818B.1.2430.001253
ORF1ab/nsp13258I258TaTcaCc1717AY.430.000075
ORF1ab/nsp13258I258IatCatT1617AY.450.001947
ORF1ab/nsp13258I258IatCatA117AY.450.000122
ORF1ab/nsp13258I258VAtcGtc1617B.10.000147
ORF1ab/nsp13258I258VAtCGtT117B.10.000009
ORF1ab/nsp13258I258VAtcGtc1717B.1.10.000308
ORF1ab/nsp13258I258VAtcGtc1717B.1.5260.0004
ORF1ab/nsp13258I258VAtcGtc1616AY.50.00033
ORF1ab/nsp13258I258IatCatT1515AY.200.000583
ORF1ab/nsp13258I258IatCatT1515AY.98.10.000726
ORF1ab/nsp13258I258IatCatT1515B.1.214.30.107143
ORF1ab/nsp13258I258IatCatT1515B.1.258.170.00156
ORF1ab/nsp13258I258IatCatT1414AY.1100.001578
ORF1ab/nsp13258I258VAtcGtc1414AY.440.000085
ORF1ab/nsp13258I258TaTcaCc1414B.10.000128
ORF1ab/nsp13258I258VAtcGtc1414B.1.1.5190.000556
ORF1ab/nsp13258I258IatCatT1414B.1.2390.017094
ORF1ab/nsp13258I258VAtcGtc1414B.1.617.20.000053
ORF1ab/nsp13258I258IatCatT1414B.1.6210.001239
ORF1ab/nsp13258I258IatCatT1313AY.1170.001099
ORF1ab/nsp13258I258IatCatT1313B.1.1.1980.01909
ORF1ab/nsp13258I258IatCatT1313B.1.177.70.002143
ORF1ab/nsp13258I258IatCatT1212AY.460.001249
ORF1ab/nsp13258I258MatCatG1111All0.000002
ORF1ab/nsp13258I258VAtcGtc1111AY.1030.000068
ORF1ab/nsp13258I258IatCatT1111AY.230.000767
ORF1ab/nsp13258I258IatCatT1011AY.470.000311
ORF1ab/nsp13258I258IatCatA111AY.470.000031
ORF1ab/nsp13258I258TaTcaCc1010AY.440.000061
ORF1ab/nsp13258I258IatCatT910B.1.5260.000212
ORF1ab/nsp13258I258IatCatA110B.1.5260.000024
ORF1ab/nsp13258I258TaTcaCc1010P.10.000158
ORF1ab/nsp13258I258FAtcTtc99All0.000002
ORF1ab/nsp13258I258IatCatT89B0.001022
ORF1ab/nsp13258I258IatCatA19B0.000128
ORF1ab/nsp13258I258IatCatT99B.1.1.5190.000357
ORF1ab/nsp13258I258VAtcGtc99B.1.20.000079
ORF1ab/nsp13258I258IatCatT99B.1.5950.002349
ORF1ab/nsp13258I258IatCatT99C.360.008197
ORF1ab/nsp13258I258IatCatT88AY.140.000704
ORF1ab/nsp13258I258VAtcGtc88AY.250.000048
ORF1ab/nsp13258I258IatCatT88AY.540.000763
ORF1ab/nsp13258I258IatCatT88AY.700.001668
ORF1ab/nsp13258I258IatCatT88AY.9.10.00067
ORF1ab/nsp13258I258IatCatT88AY.9.20.000294
ORF1ab/nsp13258I258TaTcaCc88B.1.3510.000238
ORF1ab/nsp13258I258VAtcGtc88B.1.5960.000697
ORF1ab/nsp13258I258IatCatT88B.1.6370.000585
ORF1ab/nsp13258I258IatCatT88P.1.140.000382
ORF1ab/nsp13258I258IatCatT88Q.40.003638
ORF1ab/nsp13258I258RATCCGT77All0.000001
ORF1ab/nsp13258I258IatCatT77AY.980.000553
ORF1ab/nsp13258I258IatCatA77B.1.1.330.002946
ORF1ab/nsp13258I258MatCatG77B.1.1.70.000006
ORF1ab/nsp13258I258delATC---77B.1.1.70.000006
ORF1ab/nsp13258I258IatCatT77B.1.177.140.042683
ORF1ab/nsp13258I258IatCatT77B.1.2340.000924
ORF1ab/nsp13258I258TaTcaCc77B.1.2430.000487
ORF1ab/nsp13258I258TaTcaCc77B.1.4000.003003
ORF1ab/nsp13258I258IatCatT77C.370.000812
ORF1ab/nsp13258I258IatCatT66AY.1060.002009
ORF1ab/nsp13258I258IatCatT66AY.290.000095
ORF1ab/nsp13258I258VAtcGtc66AY.470.000187
ORF1ab/nsp13258I258IatCatT66B.1.1.2220.001224
ORF1ab/nsp13258I258TaTcaCc66B.1.20.000053
ORF1ab/nsp13258I258IatCatT66B.1.3510.000178
ORF1ab/nsp13258I258TaTcaCc66B.1.617.10.000774
ORF1ab/nsp13258I258TaTcaCc66B.1.617.20.000023
ORF1ab/nsp13258I258IatCatT66Q.80.000989
ORF1ab/nsp13258I258IatCatT55AY.1160.001434
ORF1ab/nsp13258I258IatCatT55AY.1200.000186
ORF1ab/nsp13258I258TaTcaCc55AY.200.000194
ORF1ab/nsp13258I258IatCatT55AY.210.009488
ORF1ab/nsp13258I258TaTcaCc55AY.250.00003
ORF1ab/nsp13258I258VAtcGtc55AY.30.00005
ORF1ab/nsp13258I258VAtcGtc55AY.330.000334
ORF1ab/nsp13258I258IatCatT55AY.46.10.005133
ORF1ab/nsp13258I258IatCatT55AY.46.20.003177
ORF1ab/nsp13258I258IatCatT55AY.610.000524
ORF1ab/nsp13258I258IatCatT55AY.780.007704
ORF1ab/nsp13258I258IatCatT55AY.90.000338
ORF1ab/nsp13258I258IatCatT55B.1.1.1740.016892
ORF1ab/nsp13258I258IatCatT55B.1.1.750.053191
ORF1ab/nsp13258I258IatCatT55B.1.177.230.016181
ORF1ab/nsp13258I258TaTcaCc55B.1.258.170.00052
ORF1ab/nsp13258I258TaTcaCc55B.1.4290.000118
ORF1ab/nsp13258I258IatCatT55B.1.5250.000566
ORF1ab/nsp13258I258VAtcGtc55B.1.6210.000443
ORF1ab/nsp13258I258IatCatT55B.1.6250.011765
ORF1ab/nsp13258I258IatCatT55B.1.6280.001762
ORF1ab/nsp13258I258delATC---440.222222
ORF1ab/nsp13258I258FAtcTtc44AY.40.000006
ORF1ab/nsp13258I258IatCatT44AY.46.40.000658
ORF1ab/nsp13258I258IatCatT34AY.910.002191
ORF1ab/nsp13258I258IatCatA14AY.910.00073
ORF1ab/nsp13258I258IatCatT44B.1.1.10.001307
ORF1ab/nsp13258I258VAtcGtc44B.1.1.270.022599
ORF1ab/nsp13258I258VAtcGtc44B.1.1.2840.00043
ORF1ab/nsp13258I258RATCCGT44B.1.1.70.000004
ORF1ab/nsp13258I258TaTcaCc44B.1.177.830.005926
ORF1ab/nsp13258I258IatCatT44B.1.2210.000284
ORF1ab/nsp13258I258IatCatA44B.1.2650.005083
ORF1ab/nsp13258I258IatCatT44B.1.4090.003125
ORF1ab/nsp13258I258IatCatT44B.1.4970.001259
ORF1ab/nsp13258I258VAtcGtc44C.370.000464
ORF1ab/nsp13258I258IatCatT44P.1.10.001271
ORF1ab/nsp13258I258IatCatT44P.1.150.000929
ORF1ab/nsp13258I258IatCatT44P.1.160.001496
ORF1ab/nsp13258I258NaTcaAc33All0.000001
ORF1ab/nsp13258I258del1atCat-23All0
ORF1ab/nsp13258I258LAtcCtc23All0
ORF1ab/nsp13258I258del1Atc-tc13All0
ORF1ab/nsp13258I258LAtCCtG13All0
ORF1ab/nsp13258I258IatCatT33AU.20.007264
ORF1ab/nsp13258I258FAtcTtc33AY.100.00159
ORF1ab/nsp13258I258IatCatT33AY.1000.000138
ORF1ab/nsp13258I258IatCatT23AY.1110.000366
ORF1ab/nsp13258I258IatCatA13AY.1110.000183
ORF1ab/nsp13258I258IatCatT33AY.190.003421
ORF1ab/nsp13258I258VAtcGtc33AY.230.000209
ORF1ab/nsp13258I258TaTcaCc33AY.330.0002
ORF1ab/nsp13258I258IatCatT33AY.4.50.000322
ORF1ab/nsp13258I258IatCatT33AY.420.000121
ORF1ab/nsp13258I258IatCatT33AY.5.40.00083
ORF1ab/nsp13258I258TaTcaCc33AY.540.000286
ORF1ab/nsp13258I258VAtcGtc33AY.940.001328
ORF1ab/nsp13258I258IatCatT33B.1.1.1760.001318
ORF1ab/nsp13258I258VAtcGtc33B.1.1.2070.003546
ORF1ab/nsp13258I258IatCatT33B.1.1.2160.002671
ORF1ab/nsp13258I258IatCatT33B.1.1.2910.002227
ORF1ab/nsp13258I258IatCatT33B.1.1.3890.018182
ORF1ab/nsp13258I258IatCatT33B.1.1.390.001529
ORF1ab/nsp13258I258IatCatT33B.1.351.20.000908
ORF1ab/nsp13258I258IatCatT33B.1.4780.035294
ORF1ab/nsp13258I258VAtcGtc33B.1.5250.000339
ORF1ab/nsp13258I258IatCatT33B.1.5680.003333
ORF1ab/nsp13258I258IatCatT33B.1.5820.001472
ORF1ab/nsp13258I258delATC---33B.1.617.20.000011
ORF1ab/nsp13258I258IatCatT33N.50.0053
ORF1ab/nsp13258I258IatCatT33P.1.70.000958
ORF1ab/nsp13258I258IatCatT33Q.10.000379
ORF1ab/nsp13258I258IatCatT33R.10.00027
ORF1ab/nsp13258I258RATCCGT220.111111
ORF1ab/nsp13258I258VAtcGtc220.111111
ORF1ab/nsp13258I258TaTcaCc22A.280.005291
ORF1ab/nsp13258I258VAtcGtc22AD.20.000438
ORF1ab/nsp13258I258IatCatT22AE.80.000978
ORF1ab/nsp13258I258IatCatT22AY.10.000791
ORF1ab/nsp13258I258VAtcGtc22AY.1020.000053
ORF1ab/nsp13258I258VAtcGtc22AY.1190.000071
ORF1ab/nsp13258I258IatCatT22AY.120.2.10.000997
ORF1ab/nsp13258I258SaTcaGc22AY.30.00002
ORF1ab/nsp13258I258TaTcaCc22AY.30.00002
ORF1ab/nsp13258I258TaTcaCc22AY.4.20.000043
ORF1ab/nsp13258I258IatCatT22AY.4.30.001684
ORF1ab/nsp13258I258TaTcaCc22AY.450.000243
ORF1ab/nsp13258I258IatCatT22AY.480.00093
ORF1ab/nsp13258I258VAtcGtc22AY.5.40.000553
ORF1ab/nsp13258I258SaTcaGc22AY.580.001815
ORF1ab/nsp13258I258IatCatT22AY.590.001059
ORF1ab/nsp13258I258delATC---22AY.670.000929
ORF1ab/nsp13258I258IatCatT22AY.840.000875
ORF1ab/nsp13258I258VAtcGtc22AY.980.000158
ORF1ab/nsp13258I258TaTcaCc22B.1.10.000036
ORF1ab/nsp13258I258IatCatT22B.1.1.1860.006873
ORF1ab/nsp13258I258IatCatT22B.1.1.280.000622
ORF1ab/nsp13258I258IatCatT22B.1.1.3710.020833
ORF1ab/nsp13258I258TaTcaCc22B.1.1.5190.000079
ORF1ab/nsp13258I258IatCatT22B.1.177.210.000153
ORF1ab/nsp13258I258IatCatT22B.1.177.40.000422
ORF1ab/nsp13258I258IatCatT22B.1.221.10.005814
ORF1ab/nsp13258I258IatCatT22B.1.221.30.001667
ORF1ab/nsp13258I258VAtcGtc22B.1.2430.000139
ORF1ab/nsp13258I258TaTcaCc22B.1.2580.000133
ORF1ab/nsp13258I258IatCatT22B.1.258.110.000793
ORF1ab/nsp13258I258VAtcGtc22B.1.360.000292
ORF1ab/nsp13258I258IatCatT22B.1.438.10.000215
ORF1ab/nsp13258I258IatCatT22B.1.4700.002809
ORF1ab/nsp13258I258TaTcaCc22B.1.5260.000047
ORF1ab/nsp13258I258TaTcaCc22B.1.5700.005882
ORF1ab/nsp13258I258TaTcaCc22B.1.5880.00182
ORF1ab/nsp13258I258IatCatT22B.1.5960.000174
ORF1ab/nsp13258I258TaTcaCc22B.1.5960.000174
ORF1ab/nsp13258I258IatCatT22B.1.6120.005305
ORF1ab/nsp13258I258TaTcaCc22B.1.6210.000177
ORF1ab/nsp13258I258IatCatT22D.20.00015
ORF1ab/nsp13258I258IatCatT22P.1.40.001953
ORF1ab/nsp13258I258IatCatT22P.20.000373
ORF1ab/nsp13258I258IatCatA110.055556
ORF1ab/nsp13258I258IatCatT11A0.000387
ORF1ab/nsp13258I258TaTcaCc11A.10.000282
ORF1ab/nsp13258I258IatCatT11A.2.40.003367
ORF1ab/nsp13258I258VAtcGtc11A.2.50.000499
ORF1ab/nsp13258I258IatCatT11A.210.00277
ORF1ab/nsp13258I258SaTcaGc11AH.20.012048
ORF1ab/nsp13258I258CATcTGc11All0
ORF1ab/nsp13258I258PATcCCc11All0
ORF1ab/nsp13258I258MatCatG11AY.1030.000006
ORF1ab/nsp13258I258IatCatT11AY.1050.000643
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