CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 245

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13245H245HH5569HsyncaCcaT419419116969-16971
ORF1ab/nsp13245H245RH5569RnonsyncAccGc3193180.99686516969-16971
ORF1ab/nsp13245H245RH5569RnonsyncACcGG31910.003134816969-16971
ORF1ab/nsp13245H245YH5569YnonsynCacTac1681670.99404816969-16971
ORF1ab/nsp13245H245YH5569YnonsynCaCTaT16810.0059523816969-16971
ORF1ab/nsp13245H245QH5569QnonsyncaCcaA1211150.95041316969-16971
ORF1ab/nsp13245H245QH5569QnonsyncaCcaG12160.049586816969-16971
ORF1ab/nsp13245H245delH5569deldelCAC---1919116969-16971
ORF1ab/nsp13245H245NH5569NnonsynCacAac99116969-16971
ORF1ab/nsp13245H245CH5569CnonsynCACTGT22116969-16971
ORF1ab/nsp13245H245DH5569DnonsynCacGac22116969-16971
ORF1ab/nsp13245H245XH5569XnonsynCaCTaA22116969-16971
ORF1ab/nsp13245H245LH5569LnonsyncAccTc22116969-16971
ORF1ab/nsp13245H245PH5569PnonsyncAccCc11116969-16971
ORF1ab/nsp13245H245del2H5569del2delcACc--11116969-16971
ORF1ab/nsp13245H245del1H5569del1delcAcc-c11116969-16971

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13245H245HcaCcaT419419All0.00008
ORF1ab/nsp13245H245RcAccGc318319All0.000061
ORF1ab/nsp13245H245RcACcGG1319All0
ORF1ab/nsp13245H245RcAccGc245245B.1.1.70.000219
ORF1ab/nsp13245H245HcaCcaT189189AY.40.000294
ORF1ab/nsp13245H245YCacTac167168All0.000032
ORF1ab/nsp13245H245YCaCTaT1168All0
ORF1ab/nsp13245H245QcaCcaA115121All0.000022
ORF1ab/nsp13245H245QcaCcaG6121All0.000001
ORF1ab/nsp13245H245HcaCcaT6565B.1.1.4591
ORF1ab/nsp13245H245QcaCcaA5555B.1.20.000484
ORF1ab/nsp13245H245HcaCcaT4949B.1.617.20.000185
ORF1ab/nsp13245H245QcaCcaA3030AY.40.000047
ORF1ab/nsp13245H245HcaCcaT2727B.1.1.70.000024
ORF1ab/nsp13245H245YCacTac2626AY.40.00004
ORF1ab/nsp13245H245YCacTac2525B.1.617.20.000094
ORF1ab/nsp13245H245RcAccGc2121AY.250.000126
ORF1ab/nsp13245H245YCacTac2121B.1.1.70.000019
ORF1ab/nsp13245H245delCAC---1919All0.000004
ORF1ab/nsp13245H245HcaCcaT1818AY.1030.000112
ORF1ab/nsp13245H245YCacTac1818B.1.6370.001315
ORF1ab/nsp13245H245RcAccGc1717AY.1030.000106
ORF1ab/nsp13245H245HcaCcaT1313AY.270.000841
ORF1ab/nsp13245H245YCacTac1111B.1.1.5190.000437
ORF1ab/nsp13245H245NCacAac99All0.000002
ORF1ab/nsp13245H245QcaCcaA99AY.130.001449
ORF1ab/nsp13245H245YCacTac99B.1.258.170.000936
ORF1ab/nsp13245H245HcaCcaT77AY.1020.000186
ORF1ab/nsp13245H245HcaCcaT77AY.440.000043
ORF1ab/nsp13245H245YCacTac66AY.1030.000037
ORF1ab/nsp13245H245RcAccGc66B.10.000055
ORF1ab/nsp13245H245YCacTac55AY.30.00005
ORF1ab/nsp13245H245RcAccGc55AY.40.000008
ORF1ab/nsp13245H245delCAC---55B.1.1.70.000004
ORF1ab/nsp13245H245YCacTac55B.290.017544
ORF1ab/nsp13245H245YCacTac340.166667
ORF1ab/nsp13245H245YCaCTaT140.055556
ORF1ab/nsp13245H245HcaCcaT44B.1.10.000073
ORF1ab/nsp13245H245QcaCcaA44B.1.1.70.000004
ORF1ab/nsp13245H245NCacAac44B.1.1.70.000004
ORF1ab/nsp13245H245HcaCcaT44B.1.177.240.005181
ORF1ab/nsp13245H245YCacTac44B.1.177.790.009368
ORF1ab/nsp13245H245RcAccGc44B.1.617.10.000516
ORF1ab/nsp13245H245YCacTac33AY.250.000018
ORF1ab/nsp13245H245QcaCcaG23AY.30.00002
ORF1ab/nsp13245H245QcaCcaA13AY.30.00001
ORF1ab/nsp13245H245RcAccGc23AY.430.000009
ORF1ab/nsp13245H245RcACcGG13AY.430.000004
ORF1ab/nsp13245H245YCacTac33B.10.000027
ORF1ab/nsp13245H245HcaCcaT33B.1.20.000026
ORF1ab/nsp13245H245RcAccGc33B.1.20.000026
ORF1ab/nsp13245H245YCacTac33B.1.2430.000209
ORF1ab/nsp13245H245QcaCcaG33B.1.5670.01
ORF1ab/nsp13245H245delCAC---220.111111
ORF1ab/nsp13245H245XCaCTaA220.111111
ORF1ab/nsp13245H245LcAccTc22All0
ORF1ab/nsp13245H245DCacGac22All0
ORF1ab/nsp13245H245CCACTGT22All0
ORF1ab/nsp13245H245XCaCTaA22All0
ORF1ab/nsp13245H245HcaCcaT22AY.1130.000285
ORF1ab/nsp13245H245QcaCcaA22AY.260.000057
ORF1ab/nsp13245H245HcaCcaT22AY.430.000009
ORF1ab/nsp13245H245HcaCcaT22AY.450.000243
ORF1ab/nsp13245H245delCAC---22AY.670.000929
ORF1ab/nsp13245H245YCacTac22AY.75.10.000361
ORF1ab/nsp13245H245YCacTac22AY.900.001369
ORF1ab/nsp13245H245NCacAac22B.1.10.000036
ORF1ab/nsp13245H245YCacTac22B.1.1600.000062
ORF1ab/nsp13245H245YCacTac22B.1.20.000018
ORF1ab/nsp13245H245YCacTac22B.1.3510.000059
ORF1ab/nsp13245H245HcaCcaT22B.1.3510.000059
ORF1ab/nsp13245H245RcAccGc22B.1.36.290.001035
ORF1ab/nsp13245H245HcaCcaT22B.1.4250.005988
ORF1ab/nsp13245H245YCacTac22B.1.4290.000047
ORF1ab/nsp13245H245RcAccGc22B.1.617.20.000008
ORF1ab/nsp13245H245HcaCcaT22P.10.000032
ORF1ab/nsp13245H245QcaCcaA22P.10.000032
ORF1ab/nsp13245H245HcaCcaT110.055556
ORF1ab/nsp13245H245HcaCcaT11A.270.001656
ORF1ab/nsp13245H245PcAccCc11All0
ORF1ab/nsp13245H245del2cACc--11All0
ORF1ab/nsp13245H245del1cAcc-c11All0
ORF1ab/nsp13245H245HcaCcaT11AY.10.000396
ORF1ab/nsp13245H245QcaCcaA11AY.1020.000027
ORF1ab/nsp13245H245delCAC---11AY.1080.001103
ORF1ab/nsp13245H245HcaCcaT11AY.1200.000037
ORF1ab/nsp13245H245HcaCcaT11AY.200.000039
ORF1ab/nsp13245H245HcaCcaT11AY.230.00007
ORF1ab/nsp13245H245YCacTac11AY.230.00007
ORF1ab/nsp13245H245RcAccGc11AY.23.10.000417
ORF1ab/nsp13245H245LcAccTc11AY.250.000006
ORF1ab/nsp13245H245HcaCcaT11AY.290.000016
ORF1ab/nsp13245H245delCAC---11AY.30.00001
ORF1ab/nsp13245H245RcAccGc11AY.30.00001
ORF1ab/nsp13245H245YCacTac11AY.340.000097
ORF1ab/nsp13245H245YCacTac11AY.390.000025
ORF1ab/nsp13245H245HcaCcaT11AY.390.000025
ORF1ab/nsp13245H245NCacAac11AY.40.000002
ORF1ab/nsp13245H245HcaCcaT11AY.4.20.000022
ORF1ab/nsp13245H245YCacTac11AY.420.00004
ORF1ab/nsp13245H245del2cACc--11AY.440.000006
ORF1ab/nsp13245H245HcaCcaT11AY.460.000104
ORF1ab/nsp13245H245YCacTac11AY.480.000465
ORF1ab/nsp13245H245HcaCcaT11AY.50.000021
ORF1ab/nsp13245H245YCacTac11AY.550.000917
ORF1ab/nsp13245H245DCacGac11AY.60.000041
ORF1ab/nsp13245H245QcaCcaA11AY.620.000436
ORF1ab/nsp13245H245RcAccGc11AY.650.000533
ORF1ab/nsp13245H245delCAC---11AY.720.001361
ORF1ab/nsp13245H245CCACTGT11AY.750.000056
ORF1ab/nsp13245H245QcaCcaA11AY.770.001127
ORF1ab/nsp13245H245QcaCcaA11AY.790.001211
ORF1ab/nsp13245H245delCAC---11AY.990.001049
ORF1ab/nsp13245H245HcaCcaT11B.10.000009
ORF1ab/nsp13245H245delCAC---11B.10.000009
ORF1ab/nsp13245H245LcAccTc11B.10.000009
ORF1ab/nsp13245H245QcaCcaA11B.1.10.000018
ORF1ab/nsp13245H245RcAccGc11B.1.10.000018
ORF1ab/nsp13245H245CCACTGT11B.1.10.000018
ORF1ab/nsp13245H245RcAccGc11B.1.1.2890.002083
ORF1ab/nsp13245H245HcaCcaT11B.1.1.2910.000742
ORF1ab/nsp13245H245QcaCcaA11B.1.1.3060.000438
ORF1ab/nsp13245H245YCacTac11B.1.1.330.000421
ORF1ab/nsp13245H245QcaCcaA11B.1.1.390.00051
ORF1ab/nsp13245H245QcaCcaA11B.1.1.5230.001563
ORF1ab/nsp13245H245del1cAcc-c11B.1.1.70.000001
ORF1ab/nsp13245H245PcAccCc11B.1.1.70.000001
ORF1ab/nsp13245H245RcAccGc11B.1.1110.001175
ORF1ab/nsp13245H245NCacAac11B.1.1770.000013
ORF1ab/nsp13245H245HcaCcaT11B.1.1770.000013
ORF1ab/nsp13245H245RcAccGc11B.1.177.100.000878
ORF1ab/nsp13245H245HcaCcaT11B.1.177.570.000281
ORF1ab/nsp13245H245delCAC---11B.1.20.000009
ORF1ab/nsp13245H245YCacTac11B.1.2340.000132
ORF1ab/nsp13245H245YCacTac11B.1.3360.002439
ORF1ab/nsp13245H245YCacTac11B.1.3400.004292
ORF1ab/nsp13245H245DCacGac11B.1.3510.00003
ORF1ab/nsp13245H245HcaCcaT11B.1.351.20.000303
ORF1ab/nsp13245H245delCAC---11B.1.36.180.00042
ORF1ab/nsp13245H245delCAC---11B.1.4270.00005
ORF1ab/nsp13245H245HcaCcaT11B.1.4290.000024
ORF1ab/nsp13245H245QcaCcaG11B.1.438.10.000107
ORF1ab/nsp13245H245RcAccGc11B.1.5610.000397
ORF1ab/nsp13245H245RcAccGc11B.1.5690.014493
ORF1ab/nsp13245H245YCacTac11B.1.5700.002941
ORF1ab/nsp13245H245QcaCcaA11B.1.5960.000087
ORF1ab/nsp13245H245YCacTac11B.1.5960.000087
ORF1ab/nsp13245H245NCacAac11B.1.5960.000087
ORF1ab/nsp13245H245QcaCcaA11B.1.617.20.000004
ORF1ab/nsp13245H245delCAC---11B.1.617.20.000004
ORF1ab/nsp13245H245QcaCcaA11B.1.6210.000089
ORF1ab/nsp13245H245RcAccGc11B.1.6310.003367
ORF1ab/nsp13245H245HcaCcaT11B.1.88.10.004808
ORF1ab/nsp13245H245HcaCcaT11B.1.940.027027
ORF1ab/nsp13245H245HcaCcaT11C.300.001727
ORF1ab/nsp13245H245HcaCcaT11C.370.000116
ORF1ab/nsp13245H245RcAccGc11N.40.004255
ORF1ab/nsp13245H245YCacTac11P.1.10.000318
ORF1ab/nsp13245H245QcaCcaA11Q.10.000126
ORF1ab/nsp13245H245delCAC---11Q.80.000165