CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 238 | P238S | P5562S | nonsyn | Cct | Tct | 984 | 982 | 0.997967 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238S | P5562S | nonsyn | CcT | TcC | 984 | 2 | 0.00203252 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238P | P5562P | syn | ccT | ccC | 589 | 395 | 0.670628 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238P | P5562P | syn | ccT | ccA | 589 | 180 | 0.305603 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238P | P5562P | syn | ccT | ccG | 589 | 14 | 0.0237691 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238L | P5562L | nonsyn | cCt | cTt | 151 | 148 | 0.980132 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238L | P5562L | nonsyn | cCT | cTC | 151 | 2 | 0.013245 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238L | P5562L | nonsyn | cCT | cTA | 151 | 1 | 0.00662252 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238H | P5562H | nonsyn | cCt | cAt | 26 | 26 | 1 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238T | P5562T | nonsyn | Cct | Act | 23 | 23 | 1 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238del | P5562del | del | CCT | --- | 22 | 22 | 1 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238F | P5562F | nonsyn | CCt | TTt | 4 | 3 | 0.75 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238F | P5562F | nonsyn | CCT | TTC | 4 | 1 | 0.25 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238R | P5562R | nonsyn | cCt | cGt | 2 | 2 | 1 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238del2 | P5562del2 | del | cCT | c-- | 1 | 1 | 1 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238del1 | P5562del1 | del | ccT | cc- | 1 | 1 | 1 | 16948-16950 |
ORF1ab/nsp13 | 238 | P238A | P5562A | nonsyn | Cct | Gct | 1 | 1 | 1 | 16948-16950 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 982 | 984 | All | 0.000188 |
ORF1ab/nsp13 | 238 | P238S | CcT | TcC | 2 | 984 | All | 0 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 395 | 589 | All | 0.000076 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 180 | 589 | All | 0.000034 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccG | 14 | 589 | All | 0.000003 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 494 | 494 | B.1.1.7 | 0.000442 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 148 | 151 | All | 0.000028 |
ORF1ab/nsp13 | 238 | P238L | cCT | cTC | 2 | 151 | All | 0 |
ORF1ab/nsp13 | 238 | P238L | cCT | cTA | 1 | 151 | All | 0 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 90 | 119 | AY.4 | 0.00014 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 29 | 119 | AY.4 | 0.000045 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 88 | 103 | B.1.1.7 | 0.000079 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 11 | 103 | B.1.1.7 | 0.00001 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccG | 4 | 103 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 93 | 93 | B.1.1.344 | 1 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 57 | 57 | B.1.2 | 0.000502 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 47 | 47 | B.1.1.7 | 0.000042 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 46 | 46 | A.23.1 | 0.032394 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 35 | 35 | B.1.160 | 0.001092 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 32 | 32 | B.1.1.432 | 0.040506 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 27 | 27 | B.1 | 0.000247 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 26 | 26 | All | 0.000005 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 26 | 26 | B.1.1.39 | 0.013252 |
ORF1ab/nsp13 | 238 | P238T | Cct | Act | 23 | 23 | All | 0.000004 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 22 | 22 | All | 0.000004 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 22 | 22 | B.1.189 | 0.094421 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 21 | 22 | B.1.617.2 | 0.000079 |
ORF1ab/nsp13 | 238 | P238S | CcT | TcC | 1 | 22 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 21 | 21 | AY.4.5 | 0.002257 |
ORF1ab/nsp13 | 238 | P238T | Cct | Act | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 8 | 15 | AY.103 | 0.00005 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccG | 6 | 15 | AY.103 | 0.000037 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 15 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 15 | 15 | B.1.236 | 0.030801 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 12 | 12 | B.1.400 | 0.005148 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 10 | 10 | B.1.343 | 0.208333 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 9 | 9 | B.1.621.1 | 0.004552 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 8 | 8 | A.2 | 0.005295 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 8 | 8 | B.1.128 | 0.005083 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 7 | 7 | B | 0.000895 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 4 | 7 | B.1.1 | 0.000073 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 3 | 7 | B.1.1 | 0.000054 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 7 | 7 | B.1.517 | 0.002989 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 5 | 6 | AY.44 | 0.00003 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccG | 1 | 6 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 6 | 6 | B.1.1.326 | 0.010563 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 3 | 5 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 2 | 5 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 238 | P238F | CCt | TTt | 3 | 4 | 0.166667 | |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 3 | 4 | 0.166667 | |
ORF1ab/nsp13 | 238 | P238F | CCT | TTC | 1 | 4 | 0.055556 | |
ORF1ab/nsp13 | 238 | P238L | cCT | cTC | 1 | 4 | 0.055556 | |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp13 | 238 | P238F | CCt | TTt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 238 | P238F | CCT | TTC | 1 | 4 | All | 0 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 4 | 4 | B | 0.000511 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 4 | 4 | B.1.1.273 | 0.027027 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 4 | 4 | B.1.160.16 | 0.003717 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 4 | 4 | C.26 | 0.029412 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 3 | 3 | B.1.1.289 | 0.00625 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 2 | 3 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 3 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 238 | P238S | CcT | TcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | A.5 | 0.003846 |
ORF1ab/nsp13 | 238 | P238R | cCt | cGt | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccG | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 238 | P238L | cCT | cTC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 238 | P238L | cCT | cTA | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | B.1.1.319 | 0.035088 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | B.1.1.323 | 0.028169 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | B.1.177.30 | 0.005025 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 238 | P238del2 | cCT | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 238 | P238A | Cct | Gct | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 238 | P238del1 | ccT | cc- | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 238 | P238T | Cct | Act | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 238 | P238del1 | ccT | cc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 238 | P238A | Cct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 238 | P238del2 | cCT | c-- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.181 | 0.019608 |
ORF1ab/nsp13 | 238 | P238R | cCt | cGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 238 | P238T | Cct | Act | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.258.15 | 0.018868 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.309 | 0.047619 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp13 | 238 | P238R | cCt | cGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 238 | P238T | Cct | Act | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccG | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.33 | 0.021277 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 238 | P238H | cCt | cAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp13 | 238 | P238S | Cct | Tct | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 238 | P238L | cCt | cTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 238 | P238del | CCT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccA | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 238 | P238P | ccT | ccC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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