CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 238

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13238P238SP5562SnonsynCctTct9849820.99796716948-16950
ORF1ab/nsp13238P238SP5562SnonsynCcTTcC98420.0020325216948-16950
ORF1ab/nsp13238P238PP5562PsynccTccC5893950.67062816948-16950
ORF1ab/nsp13238P238PP5562PsynccTccA5891800.30560316948-16950
ORF1ab/nsp13238P238PP5562PsynccTccG589140.023769116948-16950
ORF1ab/nsp13238P238LP5562LnonsyncCtcTt1511480.98013216948-16950
ORF1ab/nsp13238P238LP5562LnonsyncCTcTC15120.01324516948-16950
ORF1ab/nsp13238P238LP5562LnonsyncCTcTA15110.0066225216948-16950
ORF1ab/nsp13238P238HP5562HnonsyncCtcAt2626116948-16950
ORF1ab/nsp13238P238TP5562TnonsynCctAct2323116948-16950
ORF1ab/nsp13238P238delP5562deldelCCT---2222116948-16950
ORF1ab/nsp13238P238FP5562FnonsynCCtTTt430.7516948-16950
ORF1ab/nsp13238P238FP5562FnonsynCCTTTC410.2516948-16950
ORF1ab/nsp13238P238RP5562RnonsyncCtcGt22116948-16950
ORF1ab/nsp13238P238del2P5562del2delcCTc--11116948-16950
ORF1ab/nsp13238P238del1P5562del1delccTcc-11116948-16950
ORF1ab/nsp13238P238AP5562AnonsynCctGct11116948-16950

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13238P238SCctTct982984All0.000188
ORF1ab/nsp13238P238SCcTTcC2984All0
ORF1ab/nsp13238P238PccTccC395589All0.000076
ORF1ab/nsp13238P238PccTccA180589All0.000034
ORF1ab/nsp13238P238PccTccG14589All0.000003
ORF1ab/nsp13238P238SCctTct494494B.1.1.70.000442
ORF1ab/nsp13238P238LcCtcTt148151All0.000028
ORF1ab/nsp13238P238LcCTcTC2151All0
ORF1ab/nsp13238P238LcCTcTA1151All0
ORF1ab/nsp13238P238PccTccC90119AY.40.00014
ORF1ab/nsp13238P238PccTccA29119AY.40.000045
ORF1ab/nsp13238P238PccTccA88103B.1.1.70.000079
ORF1ab/nsp13238P238PccTccC11103B.1.1.70.00001
ORF1ab/nsp13238P238PccTccG4103B.1.1.70.000004
ORF1ab/nsp13238P238PccTccC9393B.1.1.3441
ORF1ab/nsp13238P238SCctTct5757B.1.20.000502
ORF1ab/nsp13238P238LcCtcTt4747B.1.1.70.000042
ORF1ab/nsp13238P238SCctTct4646A.23.10.032394
ORF1ab/nsp13238P238PccTccC3535B.1.1600.001092
ORF1ab/nsp13238P238SCctTct3232B.1.1.4320.040506
ORF1ab/nsp13238P238SCctTct2727B.10.000247
ORF1ab/nsp13238P238HcCtcAt2626All0.000005
ORF1ab/nsp13238P238SCctTct2626B.1.1.390.013252
ORF1ab/nsp13238P238TCctAct2323All0.000004
ORF1ab/nsp13238P238delCCT---2222All0.000004
ORF1ab/nsp13238P238SCctTct2222B.1.1890.094421
ORF1ab/nsp13238P238SCctTct2122B.1.617.20.000079
ORF1ab/nsp13238P238SCcTTcC122B.1.617.20.000004
ORF1ab/nsp13238P238PccTccA2121AY.4.50.002257
ORF1ab/nsp13238P238TCctAct2020B.1.1.70.000018
ORF1ab/nsp13238P238SCctTct1919AY.40.00003
ORF1ab/nsp13238P238PccTccC815AY.1030.00005
ORF1ab/nsp13238P238PccTccG615AY.1030.000037
ORF1ab/nsp13238P238PccTccA115AY.1030.000006
ORF1ab/nsp13238P238PccTccC1515B.1.2360.030801
ORF1ab/nsp13238P238PccTccC1414AY.390.000346
ORF1ab/nsp13238P238SCctTct1313B.1.5260.000306
ORF1ab/nsp13238P238PccTccC1212B.10.00011
ORF1ab/nsp13238P238PccTccC1212B.1.4000.005148
ORF1ab/nsp13238P238SCctTct1111B.1.1770.000145
ORF1ab/nsp13238P238SCctTct1111B.1.2430.000765
ORF1ab/nsp13238P238LcCtcTt1010B.10.000092
ORF1ab/nsp13238P238PccTccC1010B.1.3430.208333
ORF1ab/nsp13238P238SCctTct99B.1.4290.000212
ORF1ab/nsp13238P238PccTccA99B.1.621.10.004552
ORF1ab/nsp13238P238LcCtcTt88A.20.005295
ORF1ab/nsp13238P238SCctTct88AY.1030.00005
ORF1ab/nsp13238P238HcCtcAt88B.1.1280.005083
ORF1ab/nsp13238P238SCctTct77AY.30.00007
ORF1ab/nsp13238P238PccTccC77AY.46.60.000505
ORF1ab/nsp13238P238SCctTct77B0.000895
ORF1ab/nsp13238P238SCctTct77B.1.10.000127
ORF1ab/nsp13238P238PccTccC47B.1.10.000073
ORF1ab/nsp13238P238PccTccA37B.1.10.000054
ORF1ab/nsp13238P238SCctTct77B.1.1.4340.00244
ORF1ab/nsp13238P238HcCtcAt77B.1.1.70.000006
ORF1ab/nsp13238P238delCCT---77B.1.1.70.000006
ORF1ab/nsp13238P238SCctTct77B.1.2400.001509
ORF1ab/nsp13238P238SCctTct77B.1.5170.002989
ORF1ab/nsp13238P238PccTccC66AY.30.00006
ORF1ab/nsp13238P238PccTccC56AY.440.00003
ORF1ab/nsp13238P238PccTccG16AY.440.000006
ORF1ab/nsp13238P238SCctTct66B.1.1.3260.010563
ORF1ab/nsp13238P238SCctTct66B.1.1.5190.000238
ORF1ab/nsp13238P238SCctTct55AY.440.00003
ORF1ab/nsp13238P238PccTccA55AY.90.000338
ORF1ab/nsp13238P238LcCtcTt55B.1.1600.000156
ORF1ab/nsp13238P238PccTccC35B.1.617.20.000011
ORF1ab/nsp13238P238PccTccA25B.1.617.20.000008
ORF1ab/nsp13238P238SCctTct55P.10.000079
ORF1ab/nsp13238P238delCCT---440.222222
ORF1ab/nsp13238P238FCCtTTt340.166667
ORF1ab/nsp13238P238LcCtcTt340.166667
ORF1ab/nsp13238P238FCCTTTC140.055556
ORF1ab/nsp13238P238LcCTcTC140.055556
ORF1ab/nsp13238P238PccTccA44A.2.50.001996
ORF1ab/nsp13238P238FCCtTTt34All0.000001
ORF1ab/nsp13238P238FCCTTTC14All0
ORF1ab/nsp13238P238PccTccC44AY.200.000155
ORF1ab/nsp13238P238SCctTct44AY.250.000024
ORF1ab/nsp13238P238PccTccC44AY.470.000124
ORF1ab/nsp13238P238LcCtcTt44B0.000511
ORF1ab/nsp13238P238LcCtcTt44B.1.1.2730.027027
ORF1ab/nsp13238P238PccTccC44B.1.1.280.001245
ORF1ab/nsp13238P238SCctTct44B.1.1600.000125
ORF1ab/nsp13238P238SCctTct44B.1.160.160.003717
ORF1ab/nsp13238P238LcCtcTt44B.1.1770.000053
ORF1ab/nsp13238P238SCctTct44B.1.36.10.004561
ORF1ab/nsp13238P238SCctTct44B.1.4270.000202
ORF1ab/nsp13238P238SCctTct44B.1.5960.000349
ORF1ab/nsp13238P238PccTccC44B.1.6090.001918
ORF1ab/nsp13238P238PccTccC44C.260.029412
ORF1ab/nsp13238P238SCctTct33AY.260.000085
ORF1ab/nsp13238P238LcCtcTt33AY.40.000005
ORF1ab/nsp13238P238SCctTct33AY.430.000013
ORF1ab/nsp13238P238SCctTct33AY.50.000062
ORF1ab/nsp13238P238PccTccA33AY.80.001818
ORF1ab/nsp13238P238PccTccC33AY.910.002191
ORF1ab/nsp13238P238HcCtcAt33B.10.000027
ORF1ab/nsp13238P238SCctTct33B.1.1.2840.000322
ORF1ab/nsp13238P238LcCtcTt33B.1.1.2890.00625
ORF1ab/nsp13238P238PccTccC33B.1.177.70.000495
ORF1ab/nsp13238P238LcCtcTt33B.1.20.000026
ORF1ab/nsp13238P238PccTccC23B.1.20.000018
ORF1ab/nsp13238P238PccTccA13B.1.20.000009
ORF1ab/nsp13238P238PccTccC33B.1.2580.0002
ORF1ab/nsp13238P238SCctTct33B.1.3510.000089
ORF1ab/nsp13238P238LcCtcTt33B.1.3510.000089
ORF1ab/nsp13238P238PccTccC23B.1.617.10.000258
ORF1ab/nsp13238P238PccTccA13B.1.617.10.000129
ORF1ab/nsp13238P238LcCtcTt33B.1.617.20.000011
ORF1ab/nsp13238P238LcCtcTt33D.20.000225
ORF1ab/nsp13238P238PccTccC33P.10.000047
ORF1ab/nsp13238P238SCctTct33P.1.140.000143
ORF1ab/nsp13238P238SCctTct33Q.30.000435
ORF1ab/nsp13238P238SCctTct33Q.80.000495
ORF1ab/nsp13238P238SCctTct33R.10.00027
ORF1ab/nsp13238P238SCctTct120.055556
ORF1ab/nsp13238P238SCcTTcC120.055556
ORF1ab/nsp13238P238LcCtcTt22A0.000774
ORF1ab/nsp13238P238LcCtcTt22A.50.003846
ORF1ab/nsp13238P238RcCtcGt22All0
ORF1ab/nsp13238P238SCctTct22AY.1170.000169
ORF1ab/nsp13238P238PccTccG12AY.1200.000037
ORF1ab/nsp13238P238PccTccA12AY.1200.000037
ORF1ab/nsp13238P238PccTccC22AY.23.10.000835
ORF1ab/nsp13238P238SCctTct22AY.290.000032
ORF1ab/nsp13238P238SCctTct22AY.390.000049
ORF1ab/nsp13238P238HcCtcAt22AY.40.000003
ORF1ab/nsp13238P238LcCTcTC12AY.440.000006
ORF1ab/nsp13238P238LcCtcTt12AY.440.000006
ORF1ab/nsp13238P238PccTccA22AY.580.001815
ORF1ab/nsp13238P238PccTccC22AY.740.000231
ORF1ab/nsp13238P238LcCtcTt12AY.840.000437
ORF1ab/nsp13238P238LcCTcTA12AY.840.000437
ORF1ab/nsp13238P238LcCtcTt22AZ.20.001642
ORF1ab/nsp13238P238LcCtcTt22B.1.10.000036
ORF1ab/nsp13238P238PccTccC22B.1.1.1170.019417
ORF1ab/nsp13238P238SCctTct22B.1.1.1890.003026
ORF1ab/nsp13238P238SCctTct22B.1.1.2220.000408
ORF1ab/nsp13238P238SCctTct22B.1.1.2770.001517
ORF1ab/nsp13238P238SCctTct22B.1.1.3190.035088
ORF1ab/nsp13238P238LcCtcTt22B.1.1.3230.028169
ORF1ab/nsp13238P238SCctTct22B.1.177.300.005025
ORF1ab/nsp13238P238LcCtcTt22B.1.3200.002491
ORF1ab/nsp13238P238SCctTct22B.1.360.000292
ORF1ab/nsp13238P238LcCtcTt22B.1.36.290.001035
ORF1ab/nsp13238P238LcCtcTt22B.1.4290.000047
ORF1ab/nsp13238P238SCctTct22B.1.4970.00063
ORF1ab/nsp13238P238delCCT---22B.1.617.20.000008
ORF1ab/nsp13238P238PccTccC110.055556
ORF1ab/nsp13238P238PccTccC11A.10.000282
ORF1ab/nsp13238P238SCctTct11AD.20.000219
ORF1ab/nsp13238P238LcCtcTt11AD.20.000219
ORF1ab/nsp13238P238del2cCTc--11All0
ORF1ab/nsp13238P238ACctGct11All0
ORF1ab/nsp13238P238del1ccTcc-11All0
ORF1ab/nsp13238P238PccTccC11AP.10.001502
ORF1ab/nsp13238P238PccTccC11AY.1020.000027
ORF1ab/nsp13238P238delCCT---11AY.1080.001103
ORF1ab/nsp13238P238SCctTct11AY.1180.000063
ORF1ab/nsp13238P238PccTccC11AY.120.20.001285
ORF1ab/nsp13238P238SCctTct11AY.1210.000135
ORF1ab/nsp13238P238PccTccC11AY.130.000161
ORF1ab/nsp13238P238PccTccC11AY.140.000088
ORF1ab/nsp13238P238PccTccA11AY.16.10.00047
ORF1ab/nsp13238P238PccTccA11AY.170.008197
ORF1ab/nsp13238P238SCctTct11AY.20.000356
ORF1ab/nsp13238P238PccTccA11AY.230.00007
ORF1ab/nsp13238P238LcCtcTt11AY.250.000006
ORF1ab/nsp13238P238SCctTct11AY.340.000097
ORF1ab/nsp13238P238PccTccC11AY.350.000233
ORF1ab/nsp13238P238PccTccC11AY.370.000316
ORF1ab/nsp13238P238SCctTct11AY.39.10.00004
ORF1ab/nsp13238P238delCCT---11AY.40.000002
ORF1ab/nsp13238P238TCctAct11AY.40.000002
ORF1ab/nsp13238P238PccTccC11AY.4.20.000022
ORF1ab/nsp13238P238delCCT---11AY.430.000004
ORF1ab/nsp13238P238PccTccC11AY.430.000004
ORF1ab/nsp13238P238HcCtcAt11AY.430.000004
ORF1ab/nsp13238P238HcCtcAt11AY.440.000006
ORF1ab/nsp13238P238PccTccG11AY.450.000122
ORF1ab/nsp13238P238SCctTct11AY.470.000031
ORF1ab/nsp13238P238PccTccC11AY.50.000021
ORF1ab/nsp13238P238HcCtcAt11AY.50.000021
ORF1ab/nsp13238P238PccTccC11AY.5.30.000337
ORF1ab/nsp13238P238SCctTct11AY.60.000041
ORF1ab/nsp13238P238PccTccA11AY.60.000041
ORF1ab/nsp13238P238delCCT---11AY.670.000464
ORF1ab/nsp13238P238delCCT---11AY.720.001361
ORF1ab/nsp13238P238PccTccC11AY.750.000056
ORF1ab/nsp13238P238SCctTct11AY.750.000056
ORF1ab/nsp13238P238PccTccA11AY.840.000437
ORF1ab/nsp13238P238PccTccA11AY.870.000833
ORF1ab/nsp13238P238SCctTct11AY.990.001049
ORF1ab/nsp13238P238delCCT---11B.10.000009
ORF1ab/nsp13238P238del1ccTcc-11B.10.000009
ORF1ab/nsp13238P238SCctTct11B.1.1.1700.001247
ORF1ab/nsp13238P238SCctTct11B.1.1.1740.003378
ORF1ab/nsp13238P238PccTccC11B.1.1.2050.003717
ORF1ab/nsp13238P238SCctTct11B.1.1.2160.00089
ORF1ab/nsp13238P238SCctTct11B.1.1.280.000311
ORF1ab/nsp13238P238SCctTct11B.1.1.3060.000438
ORF1ab/nsp13238P238SCctTct11B.1.1.3120.001912
ORF1ab/nsp13238P238SCctTct11B.1.1.3170.000412
ORF1ab/nsp13238P238SCctTct11B.1.1.3480.000796
ORF1ab/nsp13238P238SCctTct11B.1.1.4130.006897
ORF1ab/nsp13238P238SCctTct11B.1.1.460.004367
ORF1ab/nsp13238P238SCctTct11B.1.1.500.000679
ORF1ab/nsp13238P238PccTccC11B.1.1.500.000679
ORF1ab/nsp13238P238LcCtcTt11B.1.1.5190.00004
ORF1ab/nsp13238P238SCctTct11B.1.1.540.003021
ORF1ab/nsp13238P238SCctTct11B.1.1.610.008772
ORF1ab/nsp13238P238SCctTct11B.1.1.630.000386
ORF1ab/nsp13238P238ACctGct11B.1.1.70.000001
ORF1ab/nsp13238P238PccTccC11B.1.1110.001175
ORF1ab/nsp13238P238LcCtcTt11B.1.160.70.002079
ORF1ab/nsp13238P238SCctTct11B.1.177.200.001517
ORF1ab/nsp13238P238PccTccC11B.1.177.310.011494
ORF1ab/nsp13238P238LcCtcTt11B.1.177.40.000211
ORF1ab/nsp13238P238SCctTct11B.1.177.40.000211
ORF1ab/nsp13238P238del2cCTc--11B.1.177.560.000668
ORF1ab/nsp13238P238SCctTct11B.1.177.570.000281
ORF1ab/nsp13238P238SCctTct11B.1.1810.019608
ORF1ab/nsp13238P238RcCtcGt11B.1.20.000009
ORF1ab/nsp13238P238LcCtcTt11B.1.2060.000816
ORF1ab/nsp13238P238SCctTct11B.1.2210.000071
ORF1ab/nsp13238P238LcCtcTt11B.1.2210.000071
ORF1ab/nsp13238P238SCctTct11B.1.221.10.002907
ORF1ab/nsp13238P238LcCtcTt11B.1.230.006061
ORF1ab/nsp13238P238PccTccC11B.1.2410.000812
ORF1ab/nsp13238P238TCctAct11B.1.2430.00007
ORF1ab/nsp13238P238SCctTct11B.1.258.150.018868
ORF1ab/nsp13238P238PccTccA11B.1.2650.001271
ORF1ab/nsp13238P238LcCtcTt11B.1.3090.047619
ORF1ab/nsp13238P238LcCtcTt11B.1.3190.003049
ORF1ab/nsp13238P238PccTccC11B.1.3460.001311
ORF1ab/nsp13238P238SCctTct11B.1.3500.002933
ORF1ab/nsp13238P238RcCtcGt11B.1.3510.00003
ORF1ab/nsp13238P238LcCtcTt11B.1.351.20.000303
ORF1ab/nsp13238P238SCctTct11B.1.36.100.004785
ORF1ab/nsp13238P238SCctTct11B.1.36.160.001425
ORF1ab/nsp13238P238SCctTct11B.1.36.310.001751
ORF1ab/nsp13238P238SCctTct11B.1.3690.000285
ORF1ab/nsp13238P238SCctTct11B.1.400.10.015152
ORF1ab/nsp13238P238SCctTct11B.1.4040.001302
ORF1ab/nsp13238P238PccTccA11B.1.4160.001269
ORF1ab/nsp13238P238SCctTct11B.1.4220.000812
ORF1ab/nsp13238P238delCCT---11B.1.4270.00005
ORF1ab/nsp13238P238PccTccC11B.1.4290.000024
ORF1ab/nsp13238P238SCctTct11B.1.4430.004673
ORF1ab/nsp13238P238PccTccC11B.1.466.20.000391
ORF1ab/nsp13238P238PccTccC11B.1.4990.00105
ORF1ab/nsp13238P238LcCtcTt11B.1.5010.007353
ORF1ab/nsp13238P238SCctTct11B.1.5030.002488
ORF1ab/nsp13238P238LcCtcTt11B.1.5090.000866
ORF1ab/nsp13238P238LcCtcTt11B.1.5240.001406
ORF1ab/nsp13238P238TCctAct11B.1.5650.00081
ORF1ab/nsp13238P238PccTccG11B.1.5770.000687
ORF1ab/nsp13238P238delCCT---11B.1.5960.000087
ORF1ab/nsp13238P238HcCtcAt11B.1.5960.000087
ORF1ab/nsp13238P238PccTccC11B.1.5960.000087
ORF1ab/nsp13238P238PccTccA11B.1.5990.00365
ORF1ab/nsp13238P238LcCtcTt11B.1.6120.002653
ORF1ab/nsp13238P238HcCtcAt11B.1.617.20.000004
ORF1ab/nsp13238P238SCctTct11B.1.621.10.000506
ORF1ab/nsp13238P238SCctTct11B.1.780.008547
ORF1ab/nsp13238P238LcCtcTt11B.150.017544
ORF1ab/nsp13238P238LcCtcTt11B.230.002924
ORF1ab/nsp13238P238LcCtcTt11B.290.003509
ORF1ab/nsp13238P238LcCtcTt11B.30.000831
ORF1ab/nsp13238P238SCctTct11B.30.000831
ORF1ab/nsp13238P238SCctTct11B.3.10.001658
ORF1ab/nsp13238P238LcCtcTt11B.3.10.001658
ORF1ab/nsp13238P238LcCtcTt11B.330.021277
ORF1ab/nsp13238P238LcCtcTt11B.400.000364
ORF1ab/nsp13238P238SCctTct11B.6.60.000889
ORF1ab/nsp13238P238LcCtcTt11C.1.20.004255
ORF1ab/nsp13238P238PccTccC11C.160.00106
ORF1ab/nsp13238P238LcCtcTt11C.170.055556
ORF1ab/nsp13238P238SCctTct11C.370.000116
ORF1ab/nsp13238P238HcCtcAt11C.370.000116
ORF1ab/nsp13238P238SCctTct11D.20.000075
ORF1ab/nsp13238P238LcCtcTt11P.10.000016
ORF1ab/nsp13238P238LcCtcTt11P.1.140.000048
ORF1ab/nsp13238P238PccTccC11P.1.140.000048
ORF1ab/nsp13238P238PccTccC11P.1.150.000232
ORF1ab/nsp13238P238SCctTct11P.1.160.000374
ORF1ab/nsp13238P238SCctTct11P.1.20.001156
ORF1ab/nsp13238P238LcCtcTt11Q.10.000126
ORF1ab/nsp13238P238delCCT---11Q.80.000165
ORF1ab/nsp13238P238PccTccA11Q.80.000165
ORF1ab/nsp13238P238PccTccC11R.10.00009