CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 229

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13229S229SS5553SsyntcAtcG200619890.99152516921-16923
ORF1ab/nsp13229S229SS5553SsyntcAtcT2006130.0064805616921-16923
ORF1ab/nsp13229S229SS5553SsyntcAtcC200640.0019940216921-16923
ORF1ab/nsp13229S229LS5553LnonsyntCatTa32260.812516921-16923
ORF1ab/nsp13229S229LS5553LnonsyntCAtTG3220.062516921-16923
ORF1ab/nsp13229S229LS5553LnonsynTCACTT3220.062516921-16923
ORF1ab/nsp13229S229LS5553LnonsynTCACTG3210.0312516921-16923
ORF1ab/nsp13229S229LS5553LnonsynTCaCTa3210.0312516921-16923
ORF1ab/nsp13229S229delS5553deldelTCA---1616116921-16923
ORF1ab/nsp13229S229PS5553PnonsynTcaCca860.7516921-16923
ORF1ab/nsp13229S229PS5553PnonsynTcACcG820.2516921-16923
ORF1ab/nsp13229S229XS5553XnonsyntCatAa760.85714316921-16923
ORF1ab/nsp13229S229XS5553XnonsyntCatGa710.14285716921-16923
ORF1ab/nsp13229S229del1S5553del1deltcAtc-33116921-16923
ORF1ab/nsp13229S229TS5553TnonsynTcaAca11116921-16923
ORF1ab/nsp13229S229del2S5553del2delTCa--a11116921-16923
ORF1ab/nsp13229S229QS5553QnonsynTCaCAa11116921-16923
ORF1ab/nsp13229S229YS5553YnonsyntCAtAC11116921-16923

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13229S229StcAtcG19892006All0.00038
ORF1ab/nsp13229S229StcAtcT132006All0.000002
ORF1ab/nsp13229S229StcAtcC42006All0.000001
ORF1ab/nsp13229S229StcAtcG19051905B.1.1.1760.836995
ORF1ab/nsp13229S229LtCatTa2632All0.000005
ORF1ab/nsp13229S229LtCAtTG232All0
ORF1ab/nsp13229S229LTCACTT232All0
ORF1ab/nsp13229S229LTCaCTa132All0
ORF1ab/nsp13229S229LTCACTG132All0
ORF1ab/nsp13229S229StcAtcG1717B.1.2790.008731
ORF1ab/nsp13229S229delTCA---1616All0.000003
ORF1ab/nsp13229S229StcAtcG1515B.1.2580.000998
ORF1ab/nsp13229S229LtCatTa7120.388889
ORF1ab/nsp13229S229LTCACTT2120.111111
ORF1ab/nsp13229S229LTCaCTa1120.055556
ORF1ab/nsp13229S229LTCACTG1120.055556
ORF1ab/nsp13229S229LtCAtTG1120.055556
ORF1ab/nsp13229S229StcAtcT910AY.60.00037
ORF1ab/nsp13229S229StcAtcG110AY.60.000041
ORF1ab/nsp13229S229PTcaCca68All0.000001
ORF1ab/nsp13229S229PTcACcG28All0
ORF1ab/nsp13229S229StcAtcG68AY.40.000009
ORF1ab/nsp13229S229StcAtcC28AY.40.000003
ORF1ab/nsp13229S229XtCatAa67All0.000001
ORF1ab/nsp13229S229XtCatGa17All0
ORF1ab/nsp13229S229StcAtcG77AS.10.066667
ORF1ab/nsp13229S229StcAtcG77B.1.10.000127
ORF1ab/nsp13229S229StcAtcG77B.1.1.70.000006
ORF1ab/nsp13229S229StcAtcG56B.1.617.20.000019
ORF1ab/nsp13229S229StcAtcT16B.1.617.20.000004
ORF1ab/nsp13229S229delTCA---55B.1.1.70.000004
ORF1ab/nsp13229S229StcAtcG44B.10.000037
ORF1ab/nsp13229S229del1tcAtc-33All0.000001
ORF1ab/nsp13229S229LtCatTa33B.1.1.70.000003
ORF1ab/nsp13229S229LtCatTa33B.1.20.000026
ORF1ab/nsp13229S229PTcACcG120.055556
ORF1ab/nsp13229S229PTcaCca120.055556
ORF1ab/nsp13229S229StcAtcG22AE.10.022727
ORF1ab/nsp13229S229StcAtcG22AY.30.00002
ORF1ab/nsp13229S229LtCatTa22AY.40.000003
ORF1ab/nsp13229S229StcAtcG12AY.430.000004
ORF1ab/nsp13229S229StcAtcT12AY.430.000004
ORF1ab/nsp13229S229LtCAtTG12AY.440.000006
ORF1ab/nsp13229S229LtCatTa12AY.440.000006
ORF1ab/nsp13229S229StcAtcC12AY.750.000056
ORF1ab/nsp13229S229StcAtcG12AY.750.000056
ORF1ab/nsp13229S229LtCatTa22B.10.000018
ORF1ab/nsp13229S229delTCA---22B.1.617.20.000008
ORF1ab/nsp13229S229StcAtcG22P.1.10.000635
ORF1ab/nsp13229S229StcAtcG110.055556
ORF1ab/nsp13229S229TTcaAca110.055556
ORF1ab/nsp13229S229TTcaAca11All0
ORF1ab/nsp13229S229del2TCa--a11All0
ORF1ab/nsp13229S229QTCaCAa11All0
ORF1ab/nsp13229S229YtCAtAC11All0
ORF1ab/nsp13229S229LtCatTa11AY.1030.000006
ORF1ab/nsp13229S229delTCA---11AY.1080.001103
ORF1ab/nsp13229S229LtCatTa11AY.1200.000037
ORF1ab/nsp13229S229StcAtcT11AY.230.00007
ORF1ab/nsp13229S229StcAtcG11AY.250.000006
ORF1ab/nsp13229S229XtCatAa11AY.250.000006
ORF1ab/nsp13229S229LtCatTa11AY.30.00001
ORF1ab/nsp13229S229delTCA---11AY.40.000002
ORF1ab/nsp13229S229LtCatTa11AY.420.00004
ORF1ab/nsp13229S229StcAtcG11AY.440.000006
ORF1ab/nsp13229S229StcAtcC11AY.50.000021
ORF1ab/nsp13229S229delTCA---11AY.670.000464
ORF1ab/nsp13229S229delTCA---11AY.680.000274
ORF1ab/nsp13229S229delTCA---11AY.720.001361
ORF1ab/nsp13229S229XtCatAa11AY.750.000056
ORF1ab/nsp13229S229QTCaCAa11AY.840.000437
ORF1ab/nsp13229S229PTcaCca11AY.840.000437
ORF1ab/nsp13229S229XtCatAa11AY.840.000437
ORF1ab/nsp13229S229YtCAtAC11AY.850.000427
ORF1ab/nsp13229S229PTcACcG11AY.990.001049
ORF1ab/nsp13229S229StcAtcG11AY.99.20.000092
ORF1ab/nsp13229S229delTCA---11B.10.000009
ORF1ab/nsp13229S229XtCatAa11B.1.10.000018
ORF1ab/nsp13229S229StcAtcG11B.1.1.100.001115
ORF1ab/nsp13229S229del2TCa--a11B.1.1.70.000001
ORF1ab/nsp13229S229XtCatGa11B.1.1.70.000001
ORF1ab/nsp13229S229PTcaCca11B.1.1100.004525
ORF1ab/nsp13229S229LtCatTa11B.1.1770.000013
ORF1ab/nsp13229S229LtCatTa11B.1.177.820.000477
ORF1ab/nsp13229S229LtCatTa11B.1.177.860.000183
ORF1ab/nsp13229S229del1tcAtc-11B.1.20.000009
ORF1ab/nsp13229S229StcAtcG11B.1.20.000009
ORF1ab/nsp13229S229PTcaCca11B.1.20.000009
ORF1ab/nsp13229S229delTCA---11B.1.20.000009
ORF1ab/nsp13229S229LtCatTa11B.1.2220.001692
ORF1ab/nsp13229S229PTcaCca11B.1.2430.00007
ORF1ab/nsp13229S229StcAtcG11B.1.2430.00007
ORF1ab/nsp13229S229XtCatAa11B.1.360.000146
ORF1ab/nsp13229S229delTCA---11B.1.4270.00005
ORF1ab/nsp13229S229del1tcAtc-11B.1.5760.000907
ORF1ab/nsp13229S229del1tcAtc-11B.1.617.20.000004
ORF1ab/nsp13229S229PTcaCca11B.390.002331
ORF1ab/nsp13229S229XtCatAa11B.6.60.000889
ORF1ab/nsp13229S229delTCA---11C.170.055556
ORF1ab/nsp13229S229StcAtcT11P.10.000016