CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 227 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13227L227LL5551LsynctGctA202638100.039974316915-16917

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13227L227LctGctA81020263All0.000155
ORF1ab/nsp13227L227LctGctA294425B.1.1.70.000026
ORF1ab/nsp13227L227LctGctA620620B.1.1.5230.96875
ORF1ab/nsp13227L227LctGctA23533AY.40.000036
ORF1ab/nsp13227L227LctGctA3363AY.430.000013
ORF1ab/nsp13227L227LctGctA1191B.10.000009
ORF1ab/nsp13227L227LctGctA23113AY.1030.000143
ORF1ab/nsp13227L227LctGctA299AY.4.20.000043
ORF1ab/nsp13227L227LctGctA363P.10.000047
ORF1ab/nsp13227L227LctGctA1549B.1.10.000272
ORF1ab/nsp13227L227LctGctA1041B.1.3510.000297
ORF1ab/nsp13227L227LctGctA3637B.1.1280.022872
ORF1ab/nsp13227L227LctGctA1327B.1.1600.000405
ORF1ab/nsp13227L227LctGctA227B.1.5260.000047
ORF1ab/nsp13227L227LctGctA223AY.1000.000092
ORF1ab/nsp13227L227LctGctA514AY.330.000334
ORF1ab/nsp13227L227LctGctA19B0.000128
ORF1ab/nsp13227L227LctGctA17AY.1190.000035
ORF1ab/nsp13227L227LctGctA17AY.610.000105
ORF1ab/nsp13227L227LctGctA67B.1.1310.052632
ORF1ab/nsp13227L227LctGctA240.111111
ORF1ab/nsp13227L227LctGctA14AY.840.000437
ORF1ab/nsp13227L227LctGctA24AY.850.000854
ORF1ab/nsp13227L227LctGctA14B.1.1.280.000311
ORF1ab/nsp13227L227LctGctA14B.1.5250.000113
ORF1ab/nsp13227L227LctGctA14C.360.000911
ORF1ab/nsp13227L227LctGctA13AY.1130.000142
ORF1ab/nsp13227L227LctGctA12AY.75.10.00018
ORF1ab/nsp13227L227LctGctA12B.1.1110.001175
ORF1ab/nsp13227L227LctGctA11B.1.1.1610.003534
ORF1ab/nsp13227L227LctGctA11B.1.1.2940.001266
ORF1ab/nsp13227L227LctGctA11B.1.1.5250.005464

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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