CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 226 | V226V | V5550V | syn | gtG | gtT | 7938 | 7790 | 0.981355 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226V | V5550V | syn | gtG | gtA | 7938 | 143 | 0.0180146 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226V | V5550V | syn | gtG | gtC | 7938 | 5 | 0.000629882 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226L | V5550L | nonsyn | Gtg | Ttg | 4908 | 4902 | 0.998778 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226L | V5550L | nonsyn | Gtg | Ctg | 4908 | 6 | 0.00122249 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226M | V5550M | nonsyn | Gtg | Atg | 96 | 96 | 1 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226F | V5550F | nonsyn | GtG | TtT | 31 | 31 | 1 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226del | V5550del | del | GTG | --- | 25 | 25 | 1 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226A | V5550A | nonsyn | gTg | gCg | 17 | 17 | 1 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226E | V5550E | nonsyn | gTg | gAg | 7 | 6 | 0.857143 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226G | V5550G | nonsyn | gTg | gGg | 7 | 5 | 0.714286 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226G | V5550G | nonsyn | gTG | gGT | 7 | 1 | 0.142857 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226G | V5550G | nonsyn | gTG | gGC | 7 | 1 | 0.142857 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226E | V5550E | nonsyn | gTG | gAA | 7 | 1 | 0.142857 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226I | V5550I | nonsyn | GtG | AtA | 5 | 4 | 0.8 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226I | V5550I | nonsyn | GtG | AtC | 5 | 1 | 0.2 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226del1 | V5550del1 | del | Gtg | -tg | 4 | 4 | 1 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226K | V5550K | nonsyn | GTg | AAg | 4 | 3 | 0.75 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226K | V5550K | nonsyn | GTG | AAA | 4 | 1 | 0.25 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226C | V5550C | nonsyn | GTG | TGT | 1 | 1 | 1 | 16912-16914 |
ORF1ab/nsp13 | 226 | V226W | V5550W | nonsyn | GTg | TGg | 1 | 1 | 1 | 16912-16914 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 7790 | 7938 | All | 0.00149 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 143 | 7938 | All | 0.000027 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtC | 5 | 7938 | All | 0.000001 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4902 | 4908 | All | 0.000938 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ctg | 6 | 4908 | All | 0.000001 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4085 | 4113 | AY.114 | 0.944072 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 28 | 4113 | AY.114 | 0.006471 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2077 | 2078 | AY.85 | 0.887228 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 2078 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 814 | 814 | AY.3.1 | 0.069401 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 594 | 594 | A.2.5 | 0.296407 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 501 | 501 | B.1.474 | 0.952471 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 411 | 411 | B.1.617.2 | 0.001548 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 377 | 378 | AY.4 | 0.000587 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ctg | 1 | 378 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 294 | 314 | B.1.1.7 | 0.000263 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 20 | 314 | B.1.1.7 | 0.000018 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 256 | 260 | B.1.617.2 | 0.000964 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 4 | 260 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 240 | 240 | AY.119 | 0.008474 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 162 | 163 | B.1.1.7 | 0.000145 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ctg | 1 | 163 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 155 | 155 | AY.4 | 0.000241 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 150 | 150 | B.1.371 | 0.16835 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 127 | 130 | AY.43 | 0.000563 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 3 | 130 | AY.43 | 0.000013 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 108 | 108 | AY.25 | 0.00065 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 103 | 103 | AY.61 | 0.010792 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 96 | 96 | All | 0.000018 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 67 | 67 | AY.44 | 0.000408 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 64 | 64 | AY.43 | 0.000284 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 59 | 59 | AY.94 | 0.026118 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 58 | 58 | AY.49 | 0.185304 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 56 | 56 | AY.39 | 0.001384 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 51 | 51 | B.1.2 | 0.000449 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 51 | 51 | B.1.36.29 | 0.026384 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 50 | 50 | AY.3 | 0.000497 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 49 | 50 | B.1 | 0.000449 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ctg | 1 | 50 | B.1 | 0.000009 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 44 | 44 | B.1.621 | 0.003895 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 43 | 43 | AY.44 | 0.000262 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 42 | 42 | B.1.177.86 | 0.007705 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 41 | 41 | B.1.1.176 | 0.018014 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 38 | 38 | AY.29 | 0.000599 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 37 | 37 | AY.120 | 0.001376 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 36 | 36 | B.1.1.70 | 0.012278 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 35 | 35 | AY.103 | 0.000217 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 32 | 35 | AY.3 | 0.000318 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 3 | 35 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 35 | 35 | AY.46.6 | 0.002527 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 33 | 34 | AY.102 | 0.000875 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 34 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 30 | 34 | B.1 | 0.000275 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 3 | 34 | B.1 | 0.000027 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtC | 1 | 34 | B.1 | 0.000009 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 31 | 31 | All | 0.000006 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 29 | 29 | B.1.429 | 0.000682 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 28 | 28 | AY.119 | 0.000989 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 26 | 27 | AY.26 | 0.000736 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ctg | 1 | 27 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 26 | 27 | B.1.526 | 0.000611 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 27 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 25 | 25 | All | 0.000005 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 25 | 25 | AY.75.1 | 0.004508 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 21 | 24 | P.1 | 0.000331 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 3 | 24 | P.1 | 0.000047 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 22 | 22 | AY.59 | 0.011653 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 19 | 21 | AY.103 | 0.000118 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 2 | 21 | AY.103 | 0.000012 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 21 | 21 | B.1.595 | 0.00548 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 20 | 20 | AY.102 | 0.00053 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 20 | 20 | AY.4.2 | 0.000434 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 20 | 20 | B.1.337 | 0.111732 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 19 | 19 | AY.98.1 | 0.00092 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 17 | 17 | All | 0.000003 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 17 | 17 | AY.121 | 0.0023 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 16 | 16 | AY.3.1 | 0.001364 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 15 | 16 | AY.39 | 0.000371 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 16 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 15 | 15 | AY.120 | 0.000558 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 15 | 15 | AY.46.2 | 0.00953 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 14 | 14 | AY.39.1 | 0.000555 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 14 | 14 | AY.45 | 0.001704 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 13 | 13 | AY.46.6 | 0.000939 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 12 | 12 | B.1.564.1 | 0.018927 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 11 | 11 | AY.117 | 0.00093 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 10 | 11 | AY.26 | 0.000283 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 11 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 11 | 11 | Q.3 | 0.001595 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 9 | 9 | AY.9.1 | 0.000754 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 9 | 9 | B.1.1.305 | 0.034749 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 9 | 9 | B.1.177.77 | 0.006536 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 8 | 8 | AY.5.3 | 0.002699 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 8 | 8 | B.1.1.101 | 0.08 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 6 | 8 | B.1.2 | 0.000053 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 8 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtC | 1 | 8 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 8 | 8 | B.1.258.14 | 0.007843 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp13 | 226 | V226E | gTg | gAg | 6 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 226 | V226G | gTg | gGg | 5 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 226 | V226E | gTG | gAA | 1 | 7 | All | 0 |
ORF1ab/nsp13 | 226 | V226G | gTG | gGC | 1 | 7 | All | 0 |
ORF1ab/nsp13 | 226 | V226G | gTG | gGT | 1 | 7 | All | 0 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 7 | 7 | AY.63 | 0.002708 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 5 | 7 | B.1.1.519 | 0.000199 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 7 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtC | 1 | 7 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 4 | 7 | B.1.36 | 0.000584 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 7 | B.1.36 | 0.000438 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 6 | 6 | AY.16 | 0.002278 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 5 | 6 | AY.30 | 0.001979 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 6 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 6 | 6 | B.1.1.174 | 0.02027 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp13 | 226 | V226I | GtG | AtA | 4 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 226 | V226I | GtG | AtC | 1 | 5 | All | 0 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 5 | AY.29 | 0.000063 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 5 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 3 | 5 | AY.6 | 0.000123 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 5 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 5 | AY.84 | 0.001312 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 5 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtC | 1 | 5 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 5 | 5 | B.1.333 | 0.052632 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 5 | 5 | B.1.446 | 0.1 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 5 | C.37 | 0.000464 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 5 | C.37 | 0.000116 |
ORF1ab/nsp13 | 226 | V226del1 | Gtg | -tg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 226 | V226K | GTg | AAg | 3 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 226 | V226K | GTG | AAA | 1 | 4 | All | 0 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | AY.52 | 0.003257 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | B.1.1.339 | 0.042105 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 4 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 4 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | 0.166667 | |
ORF1ab/nsp13 | 226 | V226I | GtG | AtA | 3 | 3 | 0.166667 | |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 3 | 3 | 0.166667 | |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 3 | 0.111111 | |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AY.11 | 0.004016 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 3 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 3 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 3 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | B.1.1.251 | 0.02381 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | B.1.1.54 | 0.009063 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | B.1.214.3 | 0.021429 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 3 | 3 | B.1.474 | 0.005703 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp13 | 226 | V226E | gTG | gAA | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 226 | V226K | GTG | AAA | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 226 | V226E | gTg | gAg | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 226 | V226K | GTg | AAg | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AE.3 | 0.064516 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp13 | 226 | V226G | gTg | gGg | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 226 | V226G | gTG | gGC | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.1.121 | 0.004854 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.1.148 | 0.017544 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.1.225 | 0.014388 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.1.333 | 0.002153 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp13 | 226 | V226del1 | Gtg | -tg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.177.49 | 0.074074 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.208 | 0.08 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp13 | 226 | V226G | gTg | gGg | 1 | 2 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 226 | V226G | gTG | gGT | 1 | 2 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 2 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 2 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | B.1.635 | 0.035088 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 2 | 2 | P.5 | 0.027397 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AG.1 | 0.066667 |
ORF1ab/nsp13 | 226 | V226C | GTG | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 226 | V226W | GTg | TGg | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 226 | V226E | gTg | gAg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 226 | V226G | gTg | gGg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 226 | V226E | gTg | gAg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 226 | V226del1 | Gtg | -tg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 226 | V226G | gTg | gGg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 226 | V226I | GtG | AtA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 226 | V226K | GTg | AAg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp13 | 226 | V226I | GtG | AtC | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 226 | V226E | gTg | gAg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 226 | V226E | gTg | gAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.453 | 0.008475 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 226 | V226E | gTg | gAg | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 226 | V226G | gTg | gGg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp13 | 226 | V226del1 | Gtg | -tg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 226 | V226W | GTg | TGg | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 226 | V226C | GTG | TGT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ctg | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.496 | 0.125 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 226 | V226A | gTg | gCg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 226 | V226K | GTg | AAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 226 | V226F | GtG | TtT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp13 | 226 | V226M | Gtg | Atg | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp13 | 226 | V226del | GTG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ctg | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp13 | 226 | V226L | Gtg | Ttg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 226 | V226V | gtG | gtT | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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