CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 210 | V210I | V5534I | nonsyn | Gtt | Att | 5696 | 5695 | 0.999824 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210I | V5534I | nonsyn | GtT | AtC | 5696 | 1 | 0.000175562 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210V | V5534V | syn | gtT | gtC | 256 | 179 | 0.699219 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210V | V5534V | syn | gtT | gtG | 256 | 55 | 0.214844 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210V | V5534V | syn | gtT | gtA | 256 | 22 | 0.0859375 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210F | V5534F | nonsyn | Gtt | Ttt | 173 | 173 | 1 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210del | V5534del | del | GTT | --- | 52 | 52 | 1 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210L | V5534L | nonsyn | Gtt | Ctt | 25 | 21 | 0.84 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210L | V5534L | nonsyn | GtT | CtG | 25 | 2 | 0.08 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210L | V5534L | nonsyn | GtT | CtC | 25 | 2 | 0.08 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210del1 | V5534del1 | del | Gtt | -tt | 16 | 11 | 0.6875 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210del1 | V5534del1 | del | gTt | g-t | 16 | 3 | 0.1875 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210del1 | V5534del1 | del | GTt | -Ct | 16 | 1 | 0.0625 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210del1 | V5534del1 | del | gtT | gt- | 16 | 1 | 0.0625 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210G | V5534G | nonsyn | gTt | gGt | 10 | 10 | 1 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210A | V5534A | nonsyn | gTt | gCt | 9 | 7 | 0.777778 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210A | V5534A | nonsyn | gTT | gCC | 9 | 2 | 0.222222 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210del2 | V5534del2 | del | GTt | --t | 7 | 6 | 0.857143 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210D | V5534D | nonsyn | gTt | gAt | 7 | 6 | 0.857143 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210del2 | V5534del2 | del | gTT | g-- | 7 | 1 | 0.142857 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210D | V5534D | nonsyn | gTT | gAC | 7 | 1 | 0.142857 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210N | V5534N | nonsyn | GTT | AAC | 2 | 1 | 0.5 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210N | V5534N | nonsyn | GTt | AAt | 2 | 1 | 0.5 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210T | V5534T | nonsyn | GTt | ACt | 2 | 1 | 0.5 | 16864-16866 |
ORF1ab/nsp13 | 210 | V210T | V5534T | nonsyn | GTT | ACC | 2 | 1 | 0.5 | 16864-16866 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 5695 | 5696 | All | 0.001089 |
ORF1ab/nsp13 | 210 | V210I | GtT | AtC | 1 | 5696 | All | 0 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 5350 | 5350 | AY.69 | 0.998693 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 179 | 256 | All | 0.000034 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 55 | 256 | All | 0.000011 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 22 | 256 | All | 0.000004 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 173 | 173 | All | 0.000033 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 103 | 103 | AY.4 | 0.00016 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 65 | 65 | AY.25 | 0.000391 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 64 | 65 | B.1 | 0.000586 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 65 | B.1 | 0.000009 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 52 | 52 | All | 0.00001 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 50 | 50 | B.1.1.519 | 0.001986 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 19 | 33 | B.1.1.7 | 0.000017 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 13 | 33 | B.1.1.7 | 0.000012 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 33 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 210 | V210L | Gtt | Ctt | 21 | 25 | All | 0.000004 |
ORF1ab/nsp13 | 210 | V210L | GtT | CtC | 2 | 25 | All | 0 |
ORF1ab/nsp13 | 210 | V210L | GtT | CtG | 2 | 25 | All | 0 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 24 | 24 | AY.26 | 0.000679 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 17 | 24 | B.1.617.2 | 0.000064 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 4 | 24 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 3 | 24 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 23 | 23 | B.1.595 | 0.006002 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 11 | 16 | All | 0.000002 |
ORF1ab/nsp13 | 210 | V210del1 | gTt | g-t | 3 | 16 | All | 0.000001 |
ORF1ab/nsp13 | 210 | V210del1 | GTt | -Ct | 1 | 16 | All | 0 |
ORF1ab/nsp13 | 210 | V210del1 | gtT | gt- | 1 | 16 | All | 0 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 16 | 16 | AY.4.5 | 0.00172 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 6 | 11 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 4 | 11 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 11 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 210 | V210G | gTt | gGt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 7 | 9 | All | 0.000001 |
ORF1ab/nsp13 | 210 | V210A | gTT | gCC | 2 | 9 | All | 0 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp13 | 210 | V210L | Gtt | Ctt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 3 | 8 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 3 | 8 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 2 | 8 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 7 | 7 | A.27 | 0.011589 |
ORF1ab/nsp13 | 210 | V210D | gTt | gAt | 6 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 210 | V210del2 | GTt | --t | 6 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 210 | V210D | gTT | gAC | 1 | 7 | All | 0 |
ORF1ab/nsp13 | 210 | V210del2 | gTT | g-- | 1 | 7 | All | 0 |
ORF1ab/nsp13 | 210 | V210L | Gtt | Ctt | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 210 | V210L | GtT | CtC | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 210 | V210L | GtT | CtG | 2 | 4 | 0.111111 | |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp13 | 210 | V210L | Gtt | Ctt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 2 | 3 | AY.103 | 0.000012 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 3 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 2 | 3 | AY.33 | 0.000134 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 3 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp13 | 210 | V210G | gTt | gGt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 2 | 3 | B.1.427 | 0.000101 |
ORF1ab/nsp13 | 210 | V210del1 | gtT | gt- | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 3 | 3 | B.1.619.1 | 0.001924 |
ORF1ab/nsp13 | 210 | V210del2 | GTt | --t | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 210 | V210T | GTt | ACt | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210I | GtT | AtC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210D | gTT | gAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210A | gTT | gCC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210T | GTT | ACC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210N | GTt | AAt | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210D | gTt | gAt | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210N | GTT | AAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210N | GTt | AAt | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 210 | V210N | GTT | AAC | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 210 | V210T | GTt | ACt | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 210 | V210T | GTT | ACC | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp13 | 210 | V210D | gTt | gAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 210 | V210G | gTt | gGt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 210 | V210del1 | gTt | g-t | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 210 | V210G | gTt | gGt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp13 | 210 | V210D | gTt | gAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 210 | V210G | gTt | gGt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 210 | V210del1 | GTt | -Ct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 210 | V210A | gTT | gCC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 210 | V210D | gTt | gAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 210 | V210del2 | gTT | g-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 210 | V210L | Gtt | Ctt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 210 | V210G | gTt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 210 | V210del1 | gTt | g-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 210 | V210del2 | GTt | --t | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.1.345 | 0.043478 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 210 | V210del1 | Gtt | -tt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 210 | V210del2 | GTt | --t | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 210 | V210del1 | gTt | g-t | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 210 | V210del2 | GTt | --t | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp13 | 210 | V210D | gTt | gAt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 210 | V210del2 | GTt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp13 | 210 | V210A | gTt | gCt | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 210 | V210F | Gtt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 210 | V210del | GTT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp13 | 210 | V210G | gTt | gGt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 210 | V210I | Gtt | Att | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 210 | V210V | gtT | gtC | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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