CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp132V2VV5326VsyngtTgtA22286137740.61805616240-16242
ORF1ab/nsp132V2VV5326VsyngtTgtG2228683330.37391216240-16242
ORF1ab/nsp132V2VV5326VsyngtTgtC222861790.0080319516240-16242
ORF1ab/nsp132V2delV5326deldelGTT---9595116240-16242
ORF1ab/nsp132V2IV5326InonsynGttAtt1212116240-16242
ORF1ab/nsp132V2AV5326AnonsyngTtgCt12110.91666716240-16242
ORF1ab/nsp132V2AV5326AnonsyngTTgCC1210.083333316240-16242
ORF1ab/nsp132V2FV5326FnonsynGttTtt77116240-16242
ORF1ab/nsp132V2GV5326GnonsyngTtgGt55116240-16242
ORF1ab/nsp132V2del1V5326del1delGtt-tt540.816240-16242
ORF1ab/nsp132V2del1V5326del1delGtT-tG510.216240-16242
ORF1ab/nsp132V2SV5326SnonsynGTtAGt310.33333316240-16242
ORF1ab/nsp132V2SV5326SnonsynGTTTCG310.33333316240-16242
ORF1ab/nsp132V2SV5326SnonsynGTTTCC310.33333316240-16242
ORF1ab/nsp132V2DV5326DnonsyngTtgAt22116240-16242
ORF1ab/nsp132V2HV5326HnonsynGTTCAC22116240-16242
ORF1ab/nsp132V2LV5326LnonsynGttCtt22116240-16242
ORF1ab/nsp132V2NV5326NnonsynGTtAAt11116240-16242
ORF1ab/nsp132V2PV5326PnonsynGTTCCC11116240-16242
ORF1ab/nsp132V2YV5326YnonsynGTTTAC11116240-16242
ORF1ab/nsp132V2del2V5326del2delGTt--t11116240-16242

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp132V2VgtTgtA1377422286All0.002634
ORF1ab/nsp132V2VgtTgtG833322286All0.001594
ORF1ab/nsp132V2VgtTgtC17922286All0.000034
ORF1ab/nsp132V2VgtTgtA1299212992B.1.177.210.9935
ORF1ab/nsp132V2VgtTgtG50405040AY.46.51
ORF1ab/nsp132V2VgtTgtG30013075B.1.617.20.0113
ORF1ab/nsp132V2VgtTgtA633075B.1.617.20.000237
ORF1ab/nsp132V2VgtTgtC113075B.1.617.20.000041
ORF1ab/nsp132V2VgtTgtA428451B.1.1.70.000383
ORF1ab/nsp132V2VgtTgtC23451B.1.1.70.000021
ORF1ab/nsp132V2delGTT---9595All0.000018
ORF1ab/nsp132V2VgtTgtA4581AY.40.00007
ORF1ab/nsp132V2VgtTgtC2481AY.40.000037
ORF1ab/nsp132V2VgtTgtG1281AY.40.000019
ORF1ab/nsp132V2VgtTgtG6464AY.460.006661
ORF1ab/nsp132V2VgtTgtG5659AY.390.001384
ORF1ab/nsp132V2VgtTgtA259AY.390.000049
ORF1ab/nsp132V2VgtTgtC159AY.390.000025
ORF1ab/nsp132V2VgtTgtA3555AY.440.000213
ORF1ab/nsp132V2VgtTgtG1955AY.440.000116
ORF1ab/nsp132V2VgtTgtC155AY.440.000006
ORF1ab/nsp132V2delGTT---4646B.1.1.70.000041
ORF1ab/nsp132V2VgtTgtG4545AY.46.30.042017
ORF1ab/nsp132V2VgtTgtG3636AY.420.001448
ORF1ab/nsp132V2VgtTgtA3536B.1.1770.000461
ORF1ab/nsp132V2VgtTgtC136B.1.1770.000013
ORF1ab/nsp132V2VgtTgtA3233B.10.000293
ORF1ab/nsp132V2VgtTgtC133B.10.000009
ORF1ab/nsp132V2VgtTgtG2727B.1.619.10.017319
ORF1ab/nsp132V2VgtTgtC2124AY.50.000434
ORF1ab/nsp132V2VgtTgtG224AY.50.000041
ORF1ab/nsp132V2VgtTgtA124AY.50.000021
ORF1ab/nsp132V2VgtTgtA1717AY.200.000661
ORF1ab/nsp132V2VgtTgtC1616B.1.1.1640.082474
ORF1ab/nsp132V2VgtTgtA1313AY.1000.000598
ORF1ab/nsp132V2IGttAtt1212All0.000002
ORF1ab/nsp132V2AgTtgCt1112All0.000002
ORF1ab/nsp132V2AgTTgCC112All0
ORF1ab/nsp132V2VgtTgtA1212B.1.5960.001046
ORF1ab/nsp132V2VgtTgtA1112B.1.6210.000974
ORF1ab/nsp132V2VgtTgtG112B.1.6210.000089
ORF1ab/nsp132V2VgtTgtA911AY.1020.000239
ORF1ab/nsp132V2VgtTgtG211AY.1020.000053
ORF1ab/nsp132V2VgtTgtA611B.1.20.000053
ORF1ab/nsp132V2VgtTgtC511B.1.20.000044
ORF1ab/nsp132V2VgtTgtC610AY.430.000027
ORF1ab/nsp132V2VgtTgtA310AY.430.000013
ORF1ab/nsp132V2VgtTgtG110AY.430.000004
ORF1ab/nsp132V2VgtTgtA1010Q.10.001263
ORF1ab/nsp132V2VgtTgtA68AY.250.000036
ORF1ab/nsp132V2VgtTgtC28AY.250.000012
ORF1ab/nsp132V2delGTT---88B.1.1770.000105
ORF1ab/nsp132V2VgtTgtA88Q.30.00116
ORF1ab/nsp132V2FGttTtt77All0.000001
ORF1ab/nsp132V2VgtTgtA47B.1.10.000073
ORF1ab/nsp132V2VgtTgtC37B.1.10.000054
ORF1ab/nsp132V2VgtTgtC77B.1.2210.000497
ORF1ab/nsp132V2VgtTgtC57P.10.000079
ORF1ab/nsp132V2VgtTgtA27P.10.000032
ORF1ab/nsp132V2delGTT---66AY.40.000009
ORF1ab/nsp132V2VgtTgtC66B.1.5750.00182
ORF1ab/nsp132V2GgTtgGt55All0.000001
ORF1ab/nsp132V2del1Gtt-tt45All0.000001
ORF1ab/nsp132V2del1GtT-tG15All0
ORF1ab/nsp132V2VgtTgtC55B.1.1.2140.000277
ORF1ab/nsp132V2VgtTgtC45B.1.1.330.001684
ORF1ab/nsp132V2VgtTgtA15B.1.1.330.000421
ORF1ab/nsp132V2VgtTgtG55B.1.1.5190.000199
ORF1ab/nsp132V2VgtTgtA55B.1.5260.000118
ORF1ab/nsp132V2VgtTgtA24AY.1030.000012
ORF1ab/nsp132V2VgtTgtC24AY.1030.000012
ORF1ab/nsp132V2SGTtAGt13All0
ORF1ab/nsp132V2SGTTTCG13All0
ORF1ab/nsp132V2SGTTTCC13All0
ORF1ab/nsp132V2VgtTgtG23AY.1130.000285
ORF1ab/nsp132V2VgtTgtA13AY.1130.000142
ORF1ab/nsp132V2VgtTgtC23AY.290.000032
ORF1ab/nsp132V2VgtTgtA13AY.290.000016
ORF1ab/nsp132V2delGTT---33AY.4.50.000322
ORF1ab/nsp132V2VgtTgtC33AY.9.20.00011
ORF1ab/nsp132V2delGTT---33B.1.10.000054
ORF1ab/nsp132V2del1Gtt-tt23B.1.1.70.000002
ORF1ab/nsp132V2del1GtT-tG13B.1.1.70.000001
ORF1ab/nsp132V2VgtTgtC33B.1.177.870.002183
ORF1ab/nsp132V2VgtTgtA23B.1.3510.000059
ORF1ab/nsp132V2VgtTgtC13B.1.3510.00003
ORF1ab/nsp132V2VgtTgtC33B.1.5950.000783
ORF1ab/nsp132V2VgtTgtA33C.260.022059
ORF1ab/nsp132V2DgTtgAt220.111111
ORF1ab/nsp132V2delGTT---220.111111
ORF1ab/nsp132V2AgTtgCt220.111111
ORF1ab/nsp132V2LGttCtt22All0
ORF1ab/nsp132V2HGTTCAC22All0
ORF1ab/nsp132V2DgTtgAt22All0
ORF1ab/nsp132V2VgtTgtA22AY.1110.000366
ORF1ab/nsp132V2VgtTgtC22AY.29.10.000441
ORF1ab/nsp132V2VgtTgtC22AY.30.00002
ORF1ab/nsp132V2AgTtgCt22AY.40.000003
ORF1ab/nsp132V2VgtTgtC22AY.4.20.000043
ORF1ab/nsp132V2SGTTTCG12AY.430.000004
ORF1ab/nsp132V2SGTtAGt12AY.430.000004
ORF1ab/nsp132V2VgtTgtG22AY.46.20.001271
ORF1ab/nsp132V2VgtTgtG22AY.46.60.000144
ORF1ab/nsp132V2VgtTgtG12AY.470.000031
ORF1ab/nsp132V2VgtTgtA12AY.470.000031
ORF1ab/nsp132V2VgtTgtG22AY.5.30.000675
ORF1ab/nsp132V2VgtTgtC22AY.700.000417
ORF1ab/nsp132V2delGTT---22B.10.000018
ORF1ab/nsp132V2delGTT---22B.1.1.3110.000716
ORF1ab/nsp132V2AgTtgCt22B.1.1.70.000002
ORF1ab/nsp132V2VgtTgtC22B.1.177.120.000303
ORF1ab/nsp132V2VgtTgtA22B.1.177.860.000367
ORF1ab/nsp132V2VgtTgtA22B.1.617.10.000258
ORF1ab/nsp132V2del1Gtt-tt22B.1.617.20.000008
ORF1ab/nsp132V2VgtTgtA22C.140.008658
ORF1ab/nsp132V2VgtTgtA11A0.000387
ORF1ab/nsp132V2delGTT---11A0.000387
ORF1ab/nsp132V2VgtTgtC11A.10.000282
ORF1ab/nsp132V2IGttAtt11A.2.30.004739
ORF1ab/nsp132V2VgtTgtA11AA.10.007246
ORF1ab/nsp132V2YGTTTAC11All0
ORF1ab/nsp132V2PGTTCCC11All0
ORF1ab/nsp132V2del2GTt--t11All0
ORF1ab/nsp132V2NGTtAAt11All0
ORF1ab/nsp132V2IGttAtt11AY.1030.000006
ORF1ab/nsp132V2VgtTgtC11AY.1040.001984
ORF1ab/nsp132V2VgtTgtA11AY.1050.000643
ORF1ab/nsp132V2HGTTCAC11AY.1130.000142
ORF1ab/nsp132V2YGTTTAC11AY.1130.000142
ORF1ab/nsp132V2PGTTCCC11AY.1130.000142
ORF1ab/nsp132V2SGTTTCC11AY.1130.000142
ORF1ab/nsp132V2VgtTgtG11AY.1170.000085
ORF1ab/nsp132V2IGttAtt11AY.1170.000085
ORF1ab/nsp132V2VgtTgtC11AY.1190.000035
ORF1ab/nsp132V2VgtTgtC11AY.1200.000037
ORF1ab/nsp132V2VgtTgtA11AY.140.000088
ORF1ab/nsp132V2IGttAtt11AY.230.00007
ORF1ab/nsp132V2VgtTgtC11AY.230.00007
ORF1ab/nsp132V2FGttTtt11AY.230.00007
ORF1ab/nsp132V2AgTtgCt11AY.260.000028
ORF1ab/nsp132V2VgtTgtC11AY.260.000028
ORF1ab/nsp132V2delGTT---11AY.30.00001
ORF1ab/nsp132V2VgtTgtG11AY.34.10.00051
ORF1ab/nsp132V2FGttTtt11AY.350.000233
ORF1ab/nsp132V2VgtTgtA11AY.380.000499
ORF1ab/nsp132V2delGTT---11AY.390.000025
ORF1ab/nsp132V2IGttAtt11AY.40.000002
ORF1ab/nsp132V2IGttAtt11AY.420.00004
ORF1ab/nsp132V2GgTtgGt11AY.430.000004
ORF1ab/nsp132V2delGTT---11AY.430.000004
ORF1ab/nsp132V2AgTtgCt11AY.430.000004
ORF1ab/nsp132V2IGttAtt11AY.440.000006
ORF1ab/nsp132V2VgtTgtG11AY.450.000122
ORF1ab/nsp132V2FGttTtt11AY.460.000104
ORF1ab/nsp132V2VgtTgtG11AY.46.10.001027
ORF1ab/nsp132V2VgtTgtG11AY.46.40.000165
ORF1ab/nsp132V2GgTtgGt11AY.5.30.000337
ORF1ab/nsp132V2VgtTgtG11AY.5.40.000277
ORF1ab/nsp132V2VgtTgtG11AY.530.000288
ORF1ab/nsp132V2VgtTgtG11AY.570.000656
ORF1ab/nsp132V2VgtTgtG11AY.580.000907
ORF1ab/nsp132V2HGTTCAC11AY.670.000464
ORF1ab/nsp132V2VgtTgtG11AY.7.20.000559
ORF1ab/nsp132V2VgtTgtA11AY.710.000475
ORF1ab/nsp132V2VgtTgtG11AY.750.000056
ORF1ab/nsp132V2NGTtAAt11AY.840.000437
ORF1ab/nsp132V2delGTT---11AY.90.000068
ORF1ab/nsp132V2VgtTgtG11AY.920.000287
ORF1ab/nsp132V2AgTTgCC11AY.990.001049
ORF1ab/nsp132V2VgtTgtC11AY.99.20.000092
ORF1ab/nsp132V2VgtTgtA11B0.000128
ORF1ab/nsp132V2IGttAtt11B0.000128
ORF1ab/nsp132V2FGttTtt11B.10.000009
ORF1ab/nsp132V2GgTtgGt11B.1.10.000018
ORF1ab/nsp132V2LGttCtt11B.1.10.000018
ORF1ab/nsp132V2VgtTgtA11B.1.1.2080.012195
ORF1ab/nsp132V2delGTT---11B.1.1.2320.001815
ORF1ab/nsp132V2AgTtgCt11B.1.1.250.000569
ORF1ab/nsp132V2VgtTgtC11B.1.1.2530.002506
ORF1ab/nsp132V2delGTT---11B.1.1.370.000193
ORF1ab/nsp132V2VgtTgtC11B.1.1.4060.006494
ORF1ab/nsp132V2del2GTt--t11B.1.1.70.000001
ORF1ab/nsp132V2LGttCtt11B.1.1.70.000001
ORF1ab/nsp132V2VgtTgtG11B.1.1110.001175
ORF1ab/nsp132V2VgtTgtC11B.1.1460.004237
ORF1ab/nsp132V2VgtTgtA11B.1.1600.000031
ORF1ab/nsp132V2delGTT---11B.1.177.180.00116
ORF1ab/nsp132V2delGTT---11B.1.177.190.001431
ORF1ab/nsp132V2VgtTgtA11B.1.177.450.000381
ORF1ab/nsp132V2VgtTgtA11B.1.177.510.004566
ORF1ab/nsp132V2VgtTgtA11B.1.177.60.000977
ORF1ab/nsp132V2delGTT---11B.1.177.620.001192
ORF1ab/nsp132V2delGTT---11B.1.177.680.015152
ORF1ab/nsp132V2VgtTgtA11B.1.177.700.005917
ORF1ab/nsp132V2delGTT---11B.1.177.730.000566
ORF1ab/nsp132V2IGttAtt11B.1.177.860.000183
ORF1ab/nsp132V2delGTT---11B.1.177.90.001332
ORF1ab/nsp132V2IGttAtt11B.1.20.000009
ORF1ab/nsp132V2FGttTtt11B.1.20.000009
ORF1ab/nsp132V2delGTT---11B.1.20.000009
ORF1ab/nsp132V2GgTtgGt11B.1.2320.000537
ORF1ab/nsp132V2IGttAtt11B.1.2580.000067
ORF1ab/nsp132V2delGTT---11B.1.2580.000067
ORF1ab/nsp132V2delGTT---11B.1.416.10.001563
ORF1ab/nsp132V2VgtTgtA11B.1.4290.000024
ORF1ab/nsp132V2delGTT---11B.1.4530.003236
ORF1ab/nsp132V2GgTtgGt11B.1.466.20.000391
ORF1ab/nsp132V2VgtTgtC11B.1.4690.00361
ORF1ab/nsp132V2delGTT---11B.1.5760.000907
ORF1ab/nsp132V2delGTT---11B.1.5850.027778
ORF1ab/nsp132V2AgTtgCt11B.1.595.40.007299
ORF1ab/nsp132V2delGTT---11B.1.5960.000087
ORF1ab/nsp132V2delGTT---11B.1.617.10.000129
ORF1ab/nsp132V2AgTtgCt11B.1.617.20.000004
ORF1ab/nsp132V2delGTT---11B.1.617.20.000004
ORF1ab/nsp132V2FGttTtt11B.1.617.20.000004
ORF1ab/nsp132V2VgtTgtA11B.1.621.10.000506
ORF1ab/nsp132V2VgtTgtC11B.1.6390.021739
ORF1ab/nsp132V2IGttAtt11C.160.00106
ORF1ab/nsp132V2delGTT---11C.170.055556
ORF1ab/nsp132V2FGttTtt11P.10.000016
ORF1ab/nsp132V2VgtTgtC11P.1.150.000232
ORF1ab/nsp132V2VgtTgtA11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.