CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 199

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13199T199TT5523TsynacCacT9147800.85339216831-16833
ORF1ab/nsp13199T199TT5523TsynacCacA9141330.14551416831-16833
ORF1ab/nsp13199T199TT5523TsynacCacG91410.0010940916831-16833
ORF1ab/nsp13199T199NT5523NnonsynaCcaAc6767116831-16833
ORF1ab/nsp13199T199delT5523deldelACC---4242116831-16833
ORF1ab/nsp13199T199AT5523AnonsynAccGcc26250.96153816831-16833
ORF1ab/nsp13199T199AT5523AnonsynAcCGcA2610.038461516831-16833
ORF1ab/nsp13199T199KT5523KnonsynaCCaAA1919116831-16833
ORF1ab/nsp13199T199ST5523SnonsynAccTcc19110.57894716831-16833
ORF1ab/nsp13199T199ST5523SnonsynAcCTcT1970.36842116831-16833
ORF1ab/nsp13199T199ST5523SnonsynAcCTcA1910.052631616831-16833
ORF1ab/nsp13199T199IT5523InonsynaCcaTc1616116831-16833
ORF1ab/nsp13199T199del2T5523del2delACC--T520.416831-16833
ORF1ab/nsp13199T199del2T5523del2delACc--c520.416831-16833
ORF1ab/nsp13199T199del2T5523del2delaCCa--510.216831-16833
ORF1ab/nsp13199T199YT5523YnonsynACcTAc33116831-16833
ORF1ab/nsp13199T199PT5523PnonsynAcCCcA310.33333316831-16833
ORF1ab/nsp13199T199PT5523PnonsynAccCcc310.33333316831-16833
ORF1ab/nsp13199T199PT5523PnonsynAcCCcT310.33333316831-16833
ORF1ab/nsp13199T199LT5523LnonsynACcCTc22116831-16833
ORF1ab/nsp13199T199HT5523HnonsynACcCAc11116831-16833
ORF1ab/nsp13199T199XT5523XnonsynACCTAA11116831-16833
ORF1ab/nsp13199T199del1T5523del1delAcc-cc11116831-16833
ORF1ab/nsp13199T199ET5523EnonsynACCGAA11116831-16833
ORF1ab/nsp13199T199DT5523DnonsynACcGAc11116831-16833
ORF1ab/nsp13199T199QT5523QnonsynACCCAA11116831-16833

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13199T199TacCacT780914All0.000149
ORF1ab/nsp13199T199TacCacA133914All0.000025
ORF1ab/nsp13199T199TacCacG1914All0
ORF1ab/nsp13199T199TacCacT372372B.1.258.220.992
ORF1ab/nsp13199T199TacCacT117145B.1.1.70.000105
ORF1ab/nsp13199T199TacCacA28145B.1.1.70.000025
ORF1ab/nsp13199T199NaCcaAc6767All0.000013
ORF1ab/nsp13199T199delACC---4242All0.000008
ORF1ab/nsp13199T199TacCacT4040B.1.20.000352
ORF1ab/nsp13199T199TacCacA3535B.1.1.3980.112903
ORF1ab/nsp13199T199TacCacT2134B.1.617.20.000079
ORF1ab/nsp13199T199TacCacA1334B.1.617.20.000049
ORF1ab/nsp13199T199TacCacT2930AY.250.000174
ORF1ab/nsp13199T199TacCacA130AY.250.000006
ORF1ab/nsp13199T199TacCacT2829AY.430.000124
ORF1ab/nsp13199T199TacCacA129AY.430.000004
ORF1ab/nsp13199T199AAccGcc2526All0.000005
ORF1ab/nsp13199T199AAcCGcA126All0
ORF1ab/nsp13199T199TacCacT2424B.1.160.190.857143
ORF1ab/nsp13199T199NaCcaAc2323B.1.1.70.000021
ORF1ab/nsp13199T199KaCCaAA1919All0.000004
ORF1ab/nsp13199T199SAccTcc1119All0.000002
ORF1ab/nsp13199T199SAcCTcT719All0.000001
ORF1ab/nsp13199T199SAcCTcA119All0
ORF1ab/nsp13199T199TacCacA1719AY.30.000169
ORF1ab/nsp13199T199TacCacT219AY.30.00002
ORF1ab/nsp13199T199NaCcaAc1818B.10.000165
ORF1ab/nsp13199T199IaCcaTc1616All0.000003
ORF1ab/nsp13199T199KaCCaAA1616B.1.1.70.000014
ORF1ab/nsp13199T199TacCacT914AY.40.000014
ORF1ab/nsp13199T199TacCacA514AY.40.000008
ORF1ab/nsp13199T199TacCacT713AY.440.000043
ORF1ab/nsp13199T199TacCacA613AY.440.000037
ORF1ab/nsp13199T199TacCacT913B.10.000082
ORF1ab/nsp13199T199TacCacA413B.10.000037
ORF1ab/nsp13199T199delACC---1313B.1.1.70.000012
ORF1ab/nsp13199T199TacCacT1313B.1.1770.000171
ORF1ab/nsp13199T199TacCacT810B.1.10.000145
ORF1ab/nsp13199T199TacCacG110B.1.10.000018
ORF1ab/nsp13199T199TacCacA110B.1.10.000018
ORF1ab/nsp13199T199TacCacT99B.1.4270.000454
ORF1ab/nsp13199T199TacCacT88B.1.1.3330.008611
ORF1ab/nsp13199T199TacCacT88B.1.5250.000905
ORF1ab/nsp13199T199TacCacT67AY.390.000148
ORF1ab/nsp13199T199TacCacA17AY.390.000025
ORF1ab/nsp13199T199TacCacT77P.1.150.001626
ORF1ab/nsp13199T199TacCacT46AY.1030.000025
ORF1ab/nsp13199T199TacCacA26AY.1030.000012
ORF1ab/nsp13199T199TacCacT66AY.700.001251
ORF1ab/nsp13199T199AAccGcc66B.1.1.70.000005
ORF1ab/nsp13199T199del2ACc--c25All0
ORF1ab/nsp13199T199del2ACC--T25All0
ORF1ab/nsp13199T199del2aCCa--15All0
ORF1ab/nsp13199T199TacCacT55AY.1100.000563
ORF1ab/nsp13199T199AAccGcc55B.1.1.1740.016892
ORF1ab/nsp13199T199NaCcaAc440.222222
ORF1ab/nsp13199T199SAccTcc34B.1.1.70.000003
ORF1ab/nsp13199T199SAcCTcA14B.1.1.70.000001
ORF1ab/nsp13199T199SAcCTcT24B.1.617.20.000008
ORF1ab/nsp13199T199SAccTcc24B.1.617.20.000008
ORF1ab/nsp13199T199YACcTAc33All0.000001
ORF1ab/nsp13199T199PAcCCcT13All0
ORF1ab/nsp13199T199PAccCcc13All0
ORF1ab/nsp13199T199PAcCCcA13All0
ORF1ab/nsp13199T199AAccGcc33AY.1210.000406
ORF1ab/nsp13199T199TacCacT23AY.230.000139
ORF1ab/nsp13199T199TacCacA13AY.230.00007
ORF1ab/nsp13199T199AAccGcc33AY.250.000018
ORF1ab/nsp13199T199TacCacT33AY.290.000047
ORF1ab/nsp13199T199IaCcaTc33AY.40.000005
ORF1ab/nsp13199T199delACC---33AY.40.000005
ORF1ab/nsp13199T199TacCacT33AY.75.10.000541
ORF1ab/nsp13199T199delACC---33B.10.000027
ORF1ab/nsp13199T199IaCcaTc33B.1.1.70.000003
ORF1ab/nsp13199T199delACC---33B.1.20.000026
ORF1ab/nsp13199T199NaCcaAc33B.1.5740.006452
ORF1ab/nsp13199T199TacCacT33B.1.5960.000261
ORF1ab/nsp13199T199NaCcaAc33B.1.617.20.000011
ORF1ab/nsp13199T199TacCacT23P.10.000032
ORF1ab/nsp13199T199AAccGcc23P.10.000032
ORF1ab/nsp13199T199TacCacA13P.10.000016
ORF1ab/nsp13199T199AAcCGcA13P.10.000016
ORF1ab/nsp13199T199del2ACC--T220.111111
ORF1ab/nsp13199T199SAccTcc220.111111
ORF1ab/nsp13199T199YACcTAc220.111111
ORF1ab/nsp13199T199LACcCTc22All0
ORF1ab/nsp13199T199TacCacT22AY.1000.000092
ORF1ab/nsp13199T199TacCacT12AY.1020.000027
ORF1ab/nsp13199T199TacCacA12AY.1020.000027
ORF1ab/nsp13199T199SAccTcc12AY.1130.000142
ORF1ab/nsp13199T199SAcCTcT12AY.1130.000142
ORF1ab/nsp13199T199TacCacT22AY.200.000078
ORF1ab/nsp13199T199NaCcaAc22AY.3.10.000171
ORF1ab/nsp13199T199AAccGcc22AY.40.000003
ORF1ab/nsp13199T199SAcCTcT22AY.430.000009
ORF1ab/nsp13199T199TacCacA22AY.710.00095
ORF1ab/nsp13199T199SAcCTcT12AY.9.20.000037
ORF1ab/nsp13199T199SAccTcc12AY.9.20.000037
ORF1ab/nsp13199T199TacCacT22B.1.1.3350.025974
ORF1ab/nsp13199T199TacCacT22B.1.1.5190.000079
ORF1ab/nsp13199T199PAccCcc12B.1.1.70.000001
ORF1ab/nsp13199T199PAcCCcA12B.1.1.70.000001
ORF1ab/nsp13199T199delACC---22B.1.1770.000026
ORF1ab/nsp13199T199IaCcaTc22B.1.1770.000026
ORF1ab/nsp13199T199IaCcaTc22B.1.20.000018
ORF1ab/nsp13199T199NaCcaAc22B.1.3200.002491
ORF1ab/nsp13199T199NaCcaAc22B.1.360.000292
ORF1ab/nsp13199T199NaCcaAc22B.1.5260.000047
ORF1ab/nsp13199T199delACC---22B.1.617.20.000008
ORF1ab/nsp13199T199TacCacA22B.1.6370.000146
ORF1ab/nsp13199T199TacCacT22B.1.930.001867
ORF1ab/nsp13199T199TacCacT22P.20.000373
ORF1ab/nsp13199T199TacCacT11A.20.000662
ORF1ab/nsp13199T199TacCacT11A.23.10.000704
ORF1ab/nsp13199T199HACcCAc11All0
ORF1ab/nsp13199T199EACCGAA11All0
ORF1ab/nsp13199T199DACcGAc11All0
ORF1ab/nsp13199T199QACCCAA11All0
ORF1ab/nsp13199T199del1Acc-cc11All0
ORF1ab/nsp13199T199XACCTAA11All0
ORF1ab/nsp13199T199NaCcaAc11AY.1030.000006
ORF1ab/nsp13199T199delACC---11AY.1080.001103
ORF1ab/nsp13199T199delACC---11AY.1110.000183
ORF1ab/nsp13199T199del1Acc-cc11AY.1130.000142
ORF1ab/nsp13199T199TacCacA11AY.1170.000085
ORF1ab/nsp13199T199TacCacT11AY.1180.000063
ORF1ab/nsp13199T199TacCacA11AY.1190.000035
ORF1ab/nsp13199T199TacCacT11AY.120.000316
ORF1ab/nsp13199T199IaCcaTc11AY.1200.000037
ORF1ab/nsp13199T199delACC---11AY.1200.000037
ORF1ab/nsp13199T199NaCcaAc11AY.250.000006
ORF1ab/nsp13199T199AAccGcc11AY.290.000016
ORF1ab/nsp13199T199TacCacA11AY.370.000316
ORF1ab/nsp13199T199IaCcaTc11AY.380.000499
ORF1ab/nsp13199T199TacCacA11AY.4.20.000022
ORF1ab/nsp13199T199delACC---11AY.4.50.000107
ORF1ab/nsp13199T199TacCacA11AY.4.50.000107
ORF1ab/nsp13199T199LACcCTc11AY.430.000004
ORF1ab/nsp13199T199delACC---11AY.430.000004
ORF1ab/nsp13199T199AAccGcc11AY.430.000004
ORF1ab/nsp13199T199IaCcaTc11AY.440.000006
ORF1ab/nsp13199T199AAccGcc11AY.440.000006
ORF1ab/nsp13199T199KaCCaAA11AY.440.000006
ORF1ab/nsp13199T199NaCcaAc11AY.460.000104
ORF1ab/nsp13199T199TacCacT11AY.46.60.000072
ORF1ab/nsp13199T199TacCacT11AY.480.000465
ORF1ab/nsp13199T199delACC---11AY.520.000814
ORF1ab/nsp13199T199delACC---11AY.670.000464
ORF1ab/nsp13199T199SAcCTcT11AY.670.000464
ORF1ab/nsp13199T199delACC---11AY.680.000274
ORF1ab/nsp13199T199TacCacT11AY.70.000196
ORF1ab/nsp13199T199delACC---11AY.720.001361
ORF1ab/nsp13199T199TacCacT11AY.750.000056
ORF1ab/nsp13199T199TacCacA11AY.840.000437
ORF1ab/nsp13199T199delACC---11AY.90.000068
ORF1ab/nsp13199T199TacCacA11AY.9.10.000084
ORF1ab/nsp13199T199TacCacT11AY.9.20.000037
ORF1ab/nsp13199T199del2ACc--c11AY.9.20.000037
ORF1ab/nsp13199T199IaCcaTc11AY.9.20.000037
ORF1ab/nsp13199T199SAccTcc11AY.98.10.000048
ORF1ab/nsp13199T199LACcCTc11AY.990.001049
ORF1ab/nsp13199T199KaCCaAA11B.10.000009
ORF1ab/nsp13199T199delACC---11B.1.10.000018
ORF1ab/nsp13199T199delACC---11B.1.1.1390.022727
ORF1ab/nsp13199T199TacCacT11B.1.1.2140.000055
ORF1ab/nsp13199T199TacCacT11B.1.1.250.000569
ORF1ab/nsp13199T199delACC---11B.1.1.4480.002033
ORF1ab/nsp13199T199TacCacA11B.1.1.5230.001563
ORF1ab/nsp13199T199del2ACc--c11B.1.1.70.000001
ORF1ab/nsp13199T199XACCTAA11B.1.1.70.000001
ORF1ab/nsp13199T199YACcTAc11B.1.1.70.000001
ORF1ab/nsp13199T199QACCCAA11B.1.1.70.000001
ORF1ab/nsp13199T199HACcCAc11B.1.1.70.000001
ORF1ab/nsp13199T199TacCacT11B.1.1600.000031
ORF1ab/nsp13199T199delACC---11B.1.177.170.000821
ORF1ab/nsp13199T199NaCcaAc11B.1.177.440.000519
ORF1ab/nsp13199T199NaCcaAc11B.1.177.520.001757
ORF1ab/nsp13199T199TacCacA11B.1.177.70.000165
ORF1ab/nsp13199T199delACC---11B.1.177.830.001481
ORF1ab/nsp13199T199AAccGcc11B.1.2420.018868
ORF1ab/nsp13199T199TacCacA11B.1.3490.000715
ORF1ab/nsp13199T199TacCacT11B.1.351.20.000303
ORF1ab/nsp13199T199TacCacA11B.1.36.310.001751
ORF1ab/nsp13199T199NaCcaAc11B.1.36.70.004
ORF1ab/nsp13199T199PAcCCcT11B.1.3670.000792
ORF1ab/nsp13199T199TacCacT11B.1.3690.000285
ORF1ab/nsp13199T199TacCacT11B.1.3960.000706
ORF1ab/nsp13199T199TacCacT11B.1.4080.00369
ORF1ab/nsp13199T199TacCacT11B.1.4090.000781
ORF1ab/nsp13199T199TacCacT11B.1.5640.000426
ORF1ab/nsp13199T199SAccTcc11B.1.5960.000087
ORF1ab/nsp13199T199del2aCCa--11B.1.617.20.000004
ORF1ab/nsp13199T199TacCacT11B.1.6360.006711
ORF1ab/nsp13199T199TacCacT11B.30.000831
ORF1ab/nsp13199T199delACC---11C.170.055556
ORF1ab/nsp13199T199TacCacT11C.370.000116
ORF1ab/nsp13199T199IaCcaTc11D.20.000075
ORF1ab/nsp13199T199KaCCaAA11P.10.000016
ORF1ab/nsp13199T199EACCGAA11P.10.000016
ORF1ab/nsp13199T199IaCcaTc11P.10.000016
ORF1ab/nsp13199T199NaCcaAc11P.10.000016
ORF1ab/nsp13199T199DACcGAc11P.10.000016
ORF1ab/nsp13199T199TacCacA11P.1.70.000319
ORF1ab/nsp13199T199NaCcaAc11Q.30.000145
ORF1ab/nsp13199T199TacCacT11Q.80.000165